mRNA_L-elsbetiae_contig21620.6622.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21620.6622.1
Unique NamemRNA_L-elsbetiae_contig21620.6622.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: D8LLZ5_ECTSI (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ5_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 5.800e-39
Identity = 64/73 (87.67%), Postives = 72/73 (98.63%), Query Frame = 1
Query:    1 VIDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQ 219
            VI +AERYF+VL+ENA++D+IVVIKIYAGFCRACKAFDRKFRLLSLDF+EQGANVKFFEMDWM+TRDLCKSLQ
Sbjct:  132 VISTAERYFEVLRENAQKDQIVVIKIYAGFCRACKAFDRKFRLLSLDFQEQGANVKFFEMDWMQTRDLCKSLQ 204          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: A0A6H5JEA9_9PHAE (Thioredoxin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEA9_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.720e-38
Identity = 65/73 (89.04%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 VIDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQ 219
            VID+AERYF+VL+ENA++D+IVVIKIYAGFCRACKAFDRKFRLLSLDF+EQGANVKFFEMDWM+TRDLCKSLQ
Sbjct:  405 VIDTAERYFEVLRENAQKDQIVVIKIYAGFCRACKAFDRKFRLLSLDFQEQGANVKFFEMDWMQTRDLCKSLQ 477          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: A0A836C9F2_9STRA (Thioredoxin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.880e-10
Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1
Query:   25 FQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQV 222
            F+   E +  D++V+IK Y  +CRACKAFD K+R L L+ E+Q A   F+E+D    +D+ + L +
Sbjct:    4 FEAAVEASHGDRLVIIKAYVPWCRACKAFDLKYRRLGLELEQQDAPASFYEIDVFAVKDVKQLLDI 69          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: A0A2V3IJC0_9FLOR (Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC0_9FLOR)

HSP 1 Score: 57.8 bits (138), Expect = 1.620e-8
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 VIDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQV 222
            +I   E+Y QVL+E++  D +VV+K++A +CR+C+A   K    + +F    +NV+FF+MD+ + ++LC  L V
Sbjct:   65 LIHGVEQYLQVLRESS--DSLVVLKVFAPWCRSCRALTPKVNRFAREF----SNVRFFKMDYEQNKELCHRLGV 132          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.470e-7
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 1
Query:   55 DKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQV 222
            DK+V IK YAG+CRACK    +F  L+ +F E+ A   F+E+++   +DLC+ L +
Sbjct:  131 DKVVAIKFYAGWCRACKTIAPRFERLAKEFGEEAA---FYEIEFSANKDLCRRLDI 183          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 2.710e-7
Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    4 IDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQV 222
            ID  + Y  +++E   E+++VVIK +A +CRACKA   KF  ++ D+ +    V+F E+ +   + LCKSL +
Sbjct:   58 IDDTDAYEALIEEATRENRVVVIKFFASWCRACKAMSPKFTRIADDWPD----VEFHEIMFDNNKKLCKSLGI 126          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN)

HSP 1 Score: 52.8 bits (125), Expect = 3.160e-7
Identity = 24/73 (32.88%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    4 IDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQV 222
            ID  E +   + +   +D++V +K YA +CRACK+   +F  L+ +F   G  V+FFE+++   ++LC+ L +
Sbjct:    4 IDGDEAFLAAM-QYCTDDRLVAVKFYASWCRACKSIAPRFERLAKEFA--GDEVQFFEIEFAANKELCRRLNI 73          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: A0A7S4C0Q1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0Q1_CHRCT)

HSP 1 Score: 52.0 bits (123), Expect = 2.870e-6
Identity = 25/73 (34.25%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    4 IDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQV 222
            +D  + Y   ++E   E+++VVIK+YA +CRACKA   K++ ++ D+ +    V+F ++ +   ++LCKSL +
Sbjct:   67 LDDEKAYNAKIEEAKRENQVVVIKVYASWCRACKAMAPKYQRIAEDWPD----VEFCDILFDNNKNLCKSLGI 135          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: A0A7S2GHN9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2GHN9_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 5.590e-6
Identity = 28/74 (37.84%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 VIDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQV 222
            +I     Y  + K  A E++ V IKIYA +CRACKA   K+  ++ D E   ++V+F+E+ +   + LCKSL +
Sbjct:   67 LIPDTPAYKDLYKAAAREERTVCIKIYATWCRACKAMGPKYERIAKDPEY--SHVEFYEIAFDDNKALCKSLGI 138          
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Match: A0A7S3TUC7_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TUC7_9SPIT)

HSP 1 Score: 50.4 bits (119), Expect = 6.330e-6
Identity = 26/74 (35.14%), Postives = 44/74 (59.46%), Query Frame = 1
Query:    1 VIDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEEQGANVKFFEMDWMKTRDLCKSLQV 222
            ++  AE Y   +++   E+++VVIK YA +CRACKA   K+  ++ D+ E    ++F EM +   + LCK L +
Sbjct:   18 LLAGAEEYEAKIEQAKAENRVVVIKFYASWCRACKAMGPKYVKVAQDWPE----LEFCEMLYDNNKKLCKELGI 87          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21620.6622.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LLZ5_ECTSI5.800e-3987.67Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JEA9_9PHAE8.720e-3889.04Thioredoxin domain-containing protein n=1 Tax=Ecto... [more]
A0A836C9F2_9STRA1.880e-1040.91Thioredoxin domain-containing protein n=1 Tax=Trib... [more]
A0A2V3IJC0_9FLOR1.620e-837.84Thioredoxin-like 2-1, chloroplastic n=1 Tax=Gracil... [more]
A0A7S4A7N2_9STRA2.470e-742.86Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3ATR9_9EUKA2.710e-736.99Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
F0YB20_AURAN3.160e-732.88Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7S4C0Q1_CHRCT2.870e-634.25Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S2GHN9_9EUKA5.590e-637.84Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3TUC7_9SPIT6.330e-635.14Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21620contigL-elsbetiae_contig21620:828..1049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue8.7e-31
Seed eggNOG ortholog2880.D8LLZ5
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-14_002240.2
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815882.1852818-CDS-L-elsbetiae_contig21620:827..10491622815882.1852818-CDS-L-elsbetiae_contig21620:827..1049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21620 828..1049 -
1691683166.1159074-CDS-L-elsbetiae_contig21620:827..10491691683166.1159074-CDS-L-elsbetiae_contig21620:827..1049Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21620 828..1049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21620.6622.1prot_L-elsbetiae_contig21620.6622.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21620 828..1049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21620.6622.1

>prot_L-elsbetiae_contig21620.6622.1 ID=prot_L-elsbetiae_contig21620.6622.1|Name=mRNA_L-elsbetiae_contig21620.6622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
VIDSAERYFQVLKENAEEDKIVVIKIYAGFCRACKAFDRKFRLLSLDFEE
QGANVKFFEMDWMKTRDLCKSLQV
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mRNA from alignment at L-elsbetiae_contig21620:828..1049-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21620.6622.1 ID=mRNA_L-elsbetiae_contig21620.6622.1|Name=mRNA_L-elsbetiae_contig21620.6622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=222bp|location=Sequence derived from alignment at L-elsbetiae_contig21620:828..1049- (Laminarionema elsbetiae ELsaHSoW15)
GTCATCGACAGCGCCGAGAGATATTTCCAGGTGCTGAAGGAGAACGCAGA AGAGGACAAGATCGTCGTGATCAAGATCTACGCCGGGTTCTGCAGGGCCT GCAAGGCGTTCGACCGCAAGTTCAGGCTCCTCTCGCTCGACTTCGAGGAG CAGGGGGCGAACGTGAAGTTCTTCGAGATGGATTGGATGAAGACGAGAGA TCTGTGCAAGTCTTTGCAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21620:828..1049-

>mRNA_L-elsbetiae_contig21620.6622.1 ID=mRNA_L-elsbetiae_contig21620.6622.1|Name=mRNA_L-elsbetiae_contig21620.6622.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig21620:828..1049- (Laminarionema elsbetiae ELsaHSoW15)
GTCATCGACAGCGCCGAGAGATATTTCCAGGTGCTGAAGGAGAACGCAGA
AGAGGACAAGATCGTCGTGATCAAGATCTACGCCGGGTTCTGCAGGGCCT
GCAAGGCGTTCGACCGCAAGTTCAGGCTCCTCTCGCTCGACTTCGAGGAG
CAGGGGGCGAACGTGAAGTTCTTCGAGATGGATTGGATGAAGACGAGAGA
TCTGTGCAAGTCTTTGCAGGTGGTCATCGACAGCGCCGAGAGATATTTCC
AGGTGCTGAAGGAGAACGCAGAAGAGGACAAGATCGTCGTGATCAAGATC
TACGCCGGGTTCTGCAGGGCCTGCAAGGCGTTCGACCGCAAGTTCAGGCT
CCTCTCGCTCGACTTCGAGGAGCAGGGGGCGAACGTGAAGTTCTTCGAGA
TGGATTGGATGAAGACGAGAGATCTGTGCAAGTCTTTGCAGGTG
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