mRNA_L-elsbetiae_contig21615.6619.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21615.6619.1
Unique NamemRNA_L-elsbetiae_contig21615.6619.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: D7FZ75_ECTSI (HECT-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ75_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 4.560e-35
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 1 
Query:    1 SQVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
            ++VVLLAIRALITCIDITPRAAGSLV SGAVKPMCKRLLQIQDMDVAEACLKCL+LLSKDNPRAVL+AG
Sbjct:   59 NEVVLLAIRALITCIDITPRAAGSLVASGAVKPMCKRLLQIQDMDVAEACLKCLHLLSKDNPRAVLEAG 127
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: A0A1V1TSV9_9FUNG (HECT-type E3 ubiquitin transferase n=3 Tax=Fungi TaxID=4751 RepID=A0A1V1TSV9_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-5
Identity = 24/68 (35.29%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    4 QVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
            +++LLA R L   ++  P +A ++V  GAV  +C++LL+IQ +D+AE  L  L  +S + P ++++ G
Sbjct:  328 EIMLLACRCLANLMEALPASAANVVYGGAVPVLCRKLLEIQFIDLAEQALSTLEKISVEYPTSIVREG 395
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: UPI0020080523 (HECT-domain-containing protein n=1 Tax=Xylaria bambusicola TaxID=326684 RepID=UPI0020080523)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-5
Identity = 24/68 (35.29%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    4 QVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
            +++LLA R L   ++  P +A ++V  GAV  +C++LL+IQ +D+AE  L  L  +S + P ++++ G
Sbjct:  335 EIMLLACRCLANLMEALPASAANVVYGGAVPVLCRKLLEIQFIDLAEQALSTLEKISVEYPTSIVREG 402
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: A0A553I2C4_9PEZI (HECT-type E3 ubiquitin transferase n=1 Tax=Xylaria flabelliformis TaxID=2512241 RepID=A0A553I2C4_9PEZI)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-5
Identity = 24/68 (35.29%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    4 QVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
            +++LLA R L   ++  P +A ++V  GAV  +C++LL+IQ +D+AE  L  L  +S + P ++++ G
Sbjct:  355 EIMLLACRCLANLMEALPASAANVVYGGAVPVLCRKLLEIQFIDLAEQALSTLEKISVEYPTSIVREG 422
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: A0A1W2TJE6_ROSNE (HECT-type E3 ubiquitin transferase n=2 Tax=Xylariaceae TaxID=37990 RepID=A0A1W2TJE6_ROSNE)

HSP 1 Score: 50.8 bits (120), Expect = 1.360e-5
Identity = 24/68 (35.29%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    4 QVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
            +++LLA R L   ++  P +A ++V  GAV  +C++LL+IQ +D+AE  L  L  +S + P ++++ G
Sbjct:  407 EIMLLACRCLANLMEALPASAANVVYGGAVPVLCRKLLEIQFIDLAEQALSTLEKISVEYPTSIVREG 474
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: A0A7S1XF77_9RHOD (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XF77_9RHOD)

HSP 1 Score: 49.7 bits (117), Expect = 3.440e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   13 LLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
            LLA RA+   +D  P++  S+    A  P+CK L+ I+ +D+AE  +  L  LS D P+ V+++G
Sbjct:  183 LLAARAITHLMDALPQSTSSITHHNAAVPLCKSLISIEYIDLAEQAIAALEKLSADYPQPVVRSG 247
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: A0A5J9U3U7_9POAL (HECT-type E3 ubiquitin transferase n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9U3U7_9POAL)

HSP 1 Score: 49.7 bits (117), Expect = 3.460e-5
Identity = 27/68 (39.71%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:    4 QVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
             V LLA RA+    +  P+ A    + GAVK +C RLL + D+++AE CL+ L+ LS + P   L+ G
Sbjct:   74 DVPLLAARAIAEACEGAPQLAPIFTKYGAVKALCDRLLAVDDIELAEECLRALDSLSLECPDDCLRLG 141
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: A0A7S1TII4_9RHOD (HECT-type E3 ubiquitin transferase n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TII4_9RHOD)

HSP 1 Score: 49.7 bits (117), Expect = 3.460e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:   13 LLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
            LLA RA+   +D  P++  S+    A  P+CK L+ I+ +D+AE  +  L  LS D P+ V+++G
Sbjct:  183 LLAARAITHLMDALPQSTSSITHHNAAVPLCKSLISIEYIDLAEQAIAALEKLSADYPQPVVRSG 247
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BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Match: A0A0D6ENI4_SPOSA (HECT-type E3 ubiquitin transferase (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6ENI4_SPOSA)

HSP 1 Score: 48.5 bits (114), Expect = 8.900e-5
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    4 QVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEACLKCLNLLSKDNPRAVLKAG 207
            Q++LLA R L   ++  P +A S+V +GAV  +C++L  IQ +++AE  L  L  +S++ P A+++ G
Sbjct:  554 QMMLLACRCLANLMEALPGSAHSIVYAGAVPVLCRKLEDIQWIELAEQTLSTLEKISEEVPHAIVREG 621
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21615.6619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FZ75_ECTSI4.560e-3592.75HECT-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A1V1TSV9_9FUNG1.360e-535.29HECT-type E3 ubiquitin transferase n=3 Tax=Fungi T... [more]
UPI00200805231.360e-535.29HECT-domain-containing protein n=1 Tax=Xylaria bam... [more]
A0A553I2C4_9PEZI1.360e-535.29HECT-type E3 ubiquitin transferase n=1 Tax=Xylaria... [more]
A0A1W2TJE6_ROSNE1.360e-535.29HECT-type E3 ubiquitin transferase n=2 Tax=Xylaria... [more]
A0A7S1XF77_9RHOD3.440e-536.92HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A5J9U3U7_9POAL3.460e-539.71HECT-type E3 ubiquitin transferase n=1 Tax=Eragros... [more]
A0A7S1TII4_9RHOD3.460e-536.92HECT-type E3 ubiquitin transferase n=2 Tax=Compsop... [more]
A0A0D6ENI4_SPOSA8.900e-536.76HECT-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21615contigL-elsbetiae_contig21615:110..2013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.2e-26
Seed eggNOG ortholog2880.D7FZ75
Preferred nameUFD4
KEGG koko:K10590
KEGG Pathwayko04120,map04120
Hectar predicted targeting categorysignal peptide
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0010992,GO:0010994,GO:0016043,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019941,GO:0022607,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032991,GO:0034622,GO:0036211,GO:0042592,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051258,GO:0051338,GO:0051348,GO:0051603,GO:0051972,GO:0051974,GO:0060255,GO:0061630,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:2000112,GO:2000113,GO:2000278,GO:2000279
EggNOG free text desc.negative regulation of histone ubiquitination
EggNOG OGsCOG5021@1,KOG0168@2759
EC2.3.2.26
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.9372613-CDS-L-elsbetiae_contig21615:109..2861622815881.9372613-CDS-L-elsbetiae_contig21615:109..286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21615 110..286 +
1691683165.9338315-CDS-L-elsbetiae_contig21615:109..2861691683165.9338315-CDS-L-elsbetiae_contig21615:109..286Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21615 110..286 +
1622815881.9469905-CDS-L-elsbetiae_contig21615:1977..20131622815881.9469905-CDS-L-elsbetiae_contig21615:1977..2013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21615 1978..2013 +
1691683165.954999-CDS-L-elsbetiae_contig21615:1977..20131691683165.954999-CDS-L-elsbetiae_contig21615:1977..2013Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21615 1978..2013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21615.6619.1prot_L-elsbetiae_contig21615.6619.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21615 110..2013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21615.6619.1

>prot_L-elsbetiae_contig21615.6619.1 ID=prot_L-elsbetiae_contig21615.6619.1|Name=mRNA_L-elsbetiae_contig21615.6619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
SQVVLLAIRALITCIDITPRAAGSLVESGAVKPMCKRLLQIQDMDVAEAC
LKCLNLLSKDNPRAVLKAGS*
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mRNA from alignment at L-elsbetiae_contig21615:110..2013+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21615.6619.1 ID=mRNA_L-elsbetiae_contig21615.6619.1|Name=mRNA_L-elsbetiae_contig21615.6619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1904bp|location=Sequence derived from alignment at L-elsbetiae_contig21615:110..2013+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCAGGTGGTCCTGTTGGCCATCCGGGCGCTCATCACGTGCATCGACAT
CACCCCCCGGGCCGCGGGCAGCCTCGTGGAGAGCGGAGCCGTGAAGCCGA
TGTGCAAGAGGCTGCTGCAGATCCAGGACATGGACGTGGCGGAGGCTTGC
CTGAAGTGCCTCAACCTCCTGTCCAAGGTGCGTGTGTGTGTTCGTGTGTG
TGTGTGTGTGTTCTTGGGTGCAATTTGTAGGTGTTAAAGGTAAAAAAAAA
TCCGTTACTTCGACCTCCTGTCCAAGGTGCGTGTGTGCGTGTGTGTTTGT
GGTGCGATTTGTAGGTGTTGAAGGTAAAAAAATAAAAAAATAAAACATCC
GTTACTTCGACCTCCTGTCCTAGCAGGGTGTGTGTGTGTGTGTGTGTTTG
TGAGTGCGATTTGTAGGTGTTGAAGGTAAAACATCGGTTACTTCGACCTC
CTGTCCAAGCAGGGTGGCAAGGGGTGTGTGTGTTTGTGGTTGTTGTTTCT
CACATTAGCTCTCTACATAAATAGTCCCAAAAACATCCGTGGGGCCCCCG
TGGTCACAAAAACACTTAAGGGAGCACACTCGACGCCGCTGAAGGAAGAA
AGAGTAAAACGAAGCTACAATATGATGCGTACGCGCCAGGTAATACTAGA
CTGTGTGTGTATGTGCGTGCGTTTGTGCGTTTGATTAGTTTAGTAGGTAA
AGCACCAGTTGTCTCGACCTCCTGTCGAAGGTGTGTCTGTGTCCGTGTGT
GTGTATGTATGTATGTTGTATGTTGTCTTCACATTAAAAAACCGTTCCGA
TCTCTCCATCCATCACCTCTCAATGTCCGTACTAATCCAACACTTGATGT
GGCCAATTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTTAGTTAATG
TATGTGCAGAGGTCAGCAGTTTAAAAACGTCCAGTGTGCAGAAAATTGAA
AGTGGCGTTTTCCAGGGGGGACTGTTTGCTAAGTAGCAGGTGCTTCGACC
TCCTCCTGTTCTATCGGCATGCATCCATTCTCTTGTCACTGTCCACAGAA
CACAATGTATTGCTTCGCCGACGGCTCCGCTTCAATTACTGAGTTAAATA
ATCAAATATGGTGTGTATTTAGTCTAATTATTTCGGAAGGAAAAACAGTC
CGACAACAGCAGTTACTCAAGAATGGAACGTAACCCAAATTTTGAGACGA
GATTCCGTGGAATTCAATCGGTGCTCCGTATCCATAGGGACGTATTTCTA
GTATTTAAGCATTTTTTTTCATCAAAAATCGAACCTATTTGAAAGATAAG
CAGATACAATAATCCAAAATGGAACCTAACCCGCATTGGAGACGGGACTC
CCGTGAGAATTTTCGGTATTCCACATATATAGATAGTGACGTAATGTTGG
GCCGGCCGAGTAGAAAAACACCTAAAATATTATAACCTAATTATTTATTT
ATTTTCGACAGGACAACCCCAGCGGTCCTGAAGGCCGGCAGTTGATCGAT
CAAAAATCGAACCTAGGAGTATTTATTTATTTATTATTTAGGTTTATTTC
TTTTCGACAGAATAGCCCCAGGGCGGGTCCTGAAGGGGACTGCCTTCGCG
AGGAGAAAAAACGGGGAACATTGGTGTTATATGTGAAATAGAGTAGTAGG
GGTTCCGTAACCCGAACCCTAACCACCGACCCCCCGAACATTCCCCGATT
CCATATTTTATCCCATATGTTTCGCCGACCAAAAACCTGCGTAGACTACC
GCCTGAAGGCGGGCAGTTGATCGATCAAAAATCGAACGTATTGATTTATG
TATTCGTATGTACATTTATTGATTTACTTTTTTATTTTTTTATTTTATGT
TCAATTTATTTTCGACAGGACAACCCCAGGGCGGTCCTGAAGGCGGGCAG
TTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21615:110..2013+

>mRNA_L-elsbetiae_contig21615.6619.1 ID=mRNA_L-elsbetiae_contig21615.6619.1|Name=mRNA_L-elsbetiae_contig21615.6619.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig21615:110..2013+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCAGGTGGTCCTGTTGGCCATCCGGGCGCTCATCACGTGCATCGACAT
CACCCCCCGGGCCGCGGGCAGCCTCGTGGAGAGCGGAGCCGTGAAGCCGA
TGTGCAAGAGGCTGCTGCAGATCCAGGACATGGACGTGGCGGAGGCTTGC
CTGAAGTGCCTCAACCTCCTGTCCAAGTCCCAGGTGGTCCTGTTGGCCAT
CCGGGCGCTCATCACGTGCATCGACATCACCCCCCGGGCCGCGGGCAGCC
TCGTGGAGAGCGGAGCCGTGAAGCCGATGTGCAAGAGGCTGCTGCAGATC
CAGGACATGGACGTGGCGGAGGCTTGCCTGAAGTGCCTCAACCTCCTGTC
CAAGGACAACCCCAGGGCGGTCCTGAAGGCGGGCAGTTGAGACAACCCCA
GGGCGGTCCTGAAGGCGGGCAGTTGA
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