mRNA_L-elsbetiae_contig21613.6618.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21613.6618.1
Unique NamemRNA_L-elsbetiae_contig21613.6618.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21613.6618.1 vs. uniprot
Match: A0A6H5LMQ8_9PHAE (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LMQ8_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 9.780e-6
Identity = 24/27 (88.89%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  235 VGVGQTDYASMEQLDGDDVRLVNRAGQ 315
            VGVG  DY SMEQLDGDDVRLVNRAGQ
Sbjct:  489 VGVGDADYTSMEQLDGDDVRLVNRAGQ 515
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21613.6618.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LMQ8_9PHAE9.780e-688.89C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21613contigL-elsbetiae_contig21613:1914..2230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionC2 domain
Ec32 orthologEc-06_000760.2
Exons1
Model size318
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.900037-CDS-L-elsbetiae_contig21613:1913..22281622815881.900037-CDS-L-elsbetiae_contig21613:1913..2228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21613 1914..2228 +
1691683165.9205809-CDS-L-elsbetiae_contig21613:1913..22281691683165.9205809-CDS-L-elsbetiae_contig21613:1913..2228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21613 1914..2228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21613.6618.1prot_L-elsbetiae_contig21613.6618.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21613 1914..2228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21613.6618.1

>prot_L-elsbetiae_contig21613.6618.1 ID=prot_L-elsbetiae_contig21613.6618.1|Name=mRNA_L-elsbetiae_contig21613.6618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
PVLVSVLLGLQLGPPVPANPYHRCPKYPMYICTTNNITNEDVMTTKIYPH
HRHRHHHGHRHGQRHLRFVSFRRPHPRSVGVGQTDYASMEQLDGDDVRLV
NRAGQ
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mRNA from alignment at L-elsbetiae_contig21613:1914..2230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21613.6618.1 ID=mRNA_L-elsbetiae_contig21613.6618.1|Name=mRNA_L-elsbetiae_contig21613.6618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=317bp|location=Sequence derived from alignment at L-elsbetiae_contig21613:1914..2230+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTTCTTGTGTCCGTTTTGCTGGGCTTGCAGCTGGGGCCGCCCGTACC
CGCCAACCCCTACCACCGCTGCCCGAAATACCCCATGTACATATGTACCA
CAAACAATATCACCAACGAAGATGTCATGACTACTAAAATATACCCCCAC
CATCGCCACCGCCACCACCACGGCCACCGCCACGGCCAACGCCACCTCCG
CTTCGTTTCGTTTCGGCGACCACACCCGCGCAGCGTCGGCGTGGGGCAGA
CGGACTACGCCTCGATGGAGCAGCTCGACGGCGACGACGTCCGCCTCGTC
AACCGCGCCGGGCAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21613:1914..2230+

>mRNA_L-elsbetiae_contig21613.6618.1 ID=mRNA_L-elsbetiae_contig21613.6618.1|Name=mRNA_L-elsbetiae_contig21613.6618.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig21613:1914..2230+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGTTCTTGTGTCCGTTTTGCTGGGCTTGCAGCTGGGGCCGCCCGTACC
CGCCAACCCCTACCACCGCTGCCCGAAATACCCCATGTACATATGTACCA
CAAACAATATCACCAACGAAGATGTCATGACTACTAAAATATACCCCCAC
CATCGCCACCGCCACCACCACGGCCACCGCCACGGCCAACGCCACCTCCG
CTTCGTTTCGTTTCGGCGACCACACCCGCGCAGCGTCGGCGTGGGGCAGA
CGGACTACGCCTCGATGGAGCAGCTCGACGGCGACGACGTCCGCCTCGTC
AACCGCGCCGGGCAGCCCGTTCTTGTGTCCGTTTTGCTGGGCTTGCAGCT
GGGGCCGCCCGTACCCGCCAACCCCTACCACCGCTGCCCGAAATACCCCA
TGTACATATGTACCACAAACAATATCACCAACGAAGATGTCATGACTACT
AAAATATACCCCCACCATCGCCACCGCCACCACCACGGCCACCGCCACGG
CCAACGCCACCTCCGCTTCGTTTCGTTTCGGCGACCACACCCGCGCAGCG
TCGGCGTGGGGCAGACGGACTACGCCTCGATGGAGCAGCTCGACGGCGAC
GACGTCCGCCTCGTCAACCGCGCCGGGCAG
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