mRNA_L-elsbetiae_contig21612.6617.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21612.6617.1
Unique NamemRNA_L-elsbetiae_contig21612.6617.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: A0A6H5LJB3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LJB3_9PHAE)

HSP 1 Score: 252 bits (643), Expect = 4.630e-81
Identity = 118/146 (80.82%), Postives = 129/146 (88.36%), Query Frame = 1
Query:    1 SLGGTVHQDFPPVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYSESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            SLGG VH+D PP+VYHERYSA PWP KHSFPMSKF DLAELLA  +GPLG  GP+AM  AFRP+D+PPH+W EAVHDP YYRAF+GGTLD K +RRIGLPY+E LVDRTLLEVSGTVL ARLALK+GLACNLAGGTHHAHKGFGSG
Sbjct:   40 SLGGIVHKDLPPLVYHERYSADPWPPKHSFPMSKFRDLAELLADTNGPLGDEGPVAMKGAFRPMDRPPHKWFEAVHDPLYYRAFVGGTLDGKVIRRIGLPYTEPLVDRTLLEVSGTVLAARLALKFGLACNLAGGTHHAHKGFGSG 185          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: A0A6V1V0D3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V0D3_HETAK)

HSP 1 Score: 146 bits (369), Expect = 7.090e-40
Identity = 77/136 (56.62%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   31 PPVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYSESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            PP VYH  YS  PWPS H FPM KF  L E+L K          +     F PLD PPHEW   VHD  YY+ FL  TL     RRIG      LV RT LEV+GT+LTA+LAL++GLACNLAGGTHHAHKG+GSG
Sbjct:   62 PPFVYHPEYSC-PWPSNHRFPMWKFKGLFEVLCKDHI-------IREGEYFVPLDDPPHEWFTLVHDERYYKGFLDNTLTNDEWRRIGFRPGPGLVRRTRLEVAGTLLTAQLALQHGLACNLAGGTHHAHKGYGSG 189          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: A0A8J6CHI7_DIALT (Hist_deacetyl domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CHI7_DIALT)

HSP 1 Score: 145 bits (365), Expect = 7.090e-40
Identity = 75/135 (55.56%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   34 PVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYSESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            P+VYH +YS  PWP+ H F MSKF DL + L      LG  G         P+D PP EW  AVHD +YY  F  GTL   A+RRIG  +S  LV+RT LE +GTVL ARLAL++GLACNL GGTHHAH+ FGSG
Sbjct:    9 PLVYHAKYSFEPWPAAHRFRMSKFVDLHDHL------LGR-GIATKEQLHAPIDDPPDEWFTAVHDADYYFGFTDGTLPAPAMRRIGFEWSAQLVERTRLECAGTVLAARLALEHGLACNLGGGTHHAHRDFGSG 136          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: A0A2T1FDA4_9CYAN (Histone deacetylase n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A2T1FDA4_9CYAN)

HSP 1 Score: 144 bits (364), Expect = 8.880e-40
Identity = 75/135 (55.56%), Postives = 93/135 (68.89%), Query Frame = 1
Query:   34 PVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYSESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            P++YHE Y  AP P  H FPM+KF  L ++L   DG       +A  S F   + PP EW+E VHD  Y +A+  GTLD KA+RRIGLP+S +L +RT + V+GTVLTA+LAL+YGLACN AGGTHHA  GFGSG
Sbjct:    4 PIIYHEDY-VAPLPPGHRFPMAKFGMLYQMLIA-DG-------VADRSQFHAPELPPQEWIELVHDRHYVQAYCNGTLDAKAIRRIGLPWSRALANRTFIAVAGTVLTAKLALEYGLACNTAGGTHHAFPGFGSG 129          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: A0A7S4BJF9_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BJF9_CHRCT)

HSP 1 Score: 143 bits (360), Expect = 9.090e-40
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    4 LGGTVHQDFPPVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYS---ESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            L G       P+VYH RYSA PWP  H FPM KFSDL   + +          LA ++++   + P H W EAVHDP YYR+F+ G L E+  RRIG        +L+DRT LE +GTVLTA+LAL++GLACNLAGGTHHAH+ FGSG
Sbjct:    2 LRGVAAMQALPLVYHARYSA-PWPRTHRFPMWKFSDLHAFIKRTG--------LASAASWHEPELPDHAWFEAVHDPVYYRSFIEGRLGEEQERRIGFRNEMRKPALIDRTRLECAGTVLTAQLALEHGLACNLAGGTHHAHRSFGSG 140          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: A0A7S4BJF7_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BJF7_CHRCT)

HSP 1 Score: 143 bits (360), Expect = 4.440e-39
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    4 LGGTVHQDFPPVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYS---ESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            L G       P+VYH RYSA PWP  H FPM KFSDL   + +          LA ++++   + P H W EAVHDP YYR+F+ G L E+  RRIG        +L+DRT LE +GTVLTA+LAL++GLACNLAGGTHHAH+ FGSG
Sbjct:    2 LRGVAAMQALPLVYHARYSA-PWPRTHRFPMWKFSDLHAFIKRTG--------LASAASWHEPELPDHAWFEAVHDPVYYRSFIEGRLGEEQERRIGFRNEMRKPALIDRTRLECAGTVLTAQLALEHGLACNLAGGTHHAHRSFGSG 140          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: A0A7S2IEI5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IEI5_9EUKA)

HSP 1 Score: 139 bits (350), Expect = 7.860e-39
Identity = 77/138 (55.80%), Postives = 89/138 (64.49%), Query Frame = 1
Query:   34 PVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPY---SESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            P+VYH  YS  PWP  H FPM KF+ L   L      +G A P   ++  RPL+ PPH W EAVHD EYYRAFL G L  +  RRIG         L+ RTLLE SGTV T +LAL++GLA NLAGGTHHAH+GFGSG
Sbjct:    1 PLVYHPPYSC-PWPPAHRFPMWKFAGLYAHLTS----IGIATP---ANIHRPLNDPPHAWFEAVHDREYYRAFLAGQLGSEQERRIGFKEHAREAPLIQRTLLECSGTVRTVQLALEHGLAANLAGGTHHAHRGFGSG 130          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: A0A2G4EXA8_9CYAN (Histone deacetylase n=5 Tax=Microcoleaceae TaxID=1892252 RepID=A0A2G4EXA8_9CYAN)

HSP 1 Score: 139 bits (351), Expect = 7.760e-38
Identity = 74/135 (54.81%), Postives = 92/135 (68.15%), Query Frame = 1
Query:   34 PVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYSESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            P++YHE Y  AP PS H FPM+KF  L E+L   DG       +A  + F   + PP EW++ VHD  Y +A+  GTLD KA RRIGLP+S +LV+RT +  SGTVLTA+LAL+YGLACN AGGTHHA   +GSG
Sbjct:    4 PIIYHEDY-VAPLPSGHRFPMAKFRLLYEMLLA-DG-------VASHAQFHAPELPPSEWIQLVHDDSYIQAYCNGTLDAKAQRRIGLPWSPALVNRTCIASSGTVLTAKLALEYGLACNTAGGTHHAFPNYGSG 129          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: UPI001F41699D (histone deacetylase n=1 Tax=Tychonema sp. BBK16 TaxID=2699888 RepID=UPI001F41699D)

HSP 1 Score: 135 bits (341), Expect = 1.140e-37
Identity = 74/135 (54.81%), Postives = 91/135 (67.41%), Query Frame = 1
Query:   34 PVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYSESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            P++YHE Y  AP PS H FPM+KF  L E+L   DG       +A  + F   + PP EW+E VHD  Y +A+  GTLD KA RRIGLP+S +LV+RT +  SGTVLTA+LAL+ GLACN AGGTHHA   +GSG
Sbjct:    4 PIIYHEDY-VAPLPSGHRFPMAKFRLLYEMLLA-DG-------VASHTQFHAPELPPSEWIELVHDDYYIQAYCNGTLDAKAQRRIGLPWSPALVNRTRIASSGTVLTAKLALECGLACNTAGGTHHAFPDYGSG 129          
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Match: UPI0019A7BA7B (Histone deacetylase n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=UPI0019A7BA7B)

HSP 1 Score: 139 bits (349), Expect = 1.540e-37
Identity = 77/135 (57.04%), Postives = 90/135 (66.67%), Query Frame = 1
Query:   34 PVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLGAAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLPYSESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG 438
            P+VYH  Y  AP P  H FPMSKF  L E L   DG + A       S     ++ P EWLE VH PEY RA+  GTLD KA RRIGLP+S +LV+RT + V G+VLTARLAL++GLACN AGGTHHA  G+GSG
Sbjct:    4 PIVYHPEY-VAPLPEGHRFPMSKFRLLYERLLT-DGVVDA-------SQIHTPERSPQEWLELVHTPEYVRAYCDGTLDAKAQRRIGLPWSPALVNRTCVAVGGSVLTARLALEHGLACNTAGGTHHAFPGYGSG 129          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21612.6617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LJB3_9PHAE4.630e-8180.82Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A6V1V0D3_HETAK7.090e-4056.62Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J6CHI7_DIALT7.090e-4055.56Hist_deacetyl domain-containing protein n=2 Tax=Di... [more]
A0A2T1FDA4_9CYAN8.880e-4055.56Histone deacetylase n=2 Tax=unclassified Cyanobact... [more]
A0A7S4BJF9_CHRCT9.090e-4052.03Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S4BJF7_CHRCT4.440e-3952.03Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S2IEI5_9EUKA7.860e-3955.80Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A2G4EXA8_9CYAN7.760e-3854.81Histone deacetylase n=5 Tax=Microcoleaceae TaxID=1... [more]
UPI001F41699D1.140e-3754.81histone deacetylase n=1 Tax=Tychonema sp. BBK16 Ta... [more]
UPI0019A7BA7B1.540e-3757.04Histone deacetylase n=1 Tax=Verrucomicrobia bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21612contigL-elsbetiae_contig21612:1021..2091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue4.3e-66
Seed eggNOG ortholog2880.D7FV83
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein deacetylase activity
EggNOG OGsCOG0123@1,KOG1344@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionHistone deactylase
Ec32 orthologEc-14_000150.1
Exons2
Model size441
Cds size441
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.8619816-CDS-L-elsbetiae_contig21612:1020..13071622815881.8619816-CDS-L-elsbetiae_contig21612:1020..1307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21612 1021..1307 +
1691683165.899147-CDS-L-elsbetiae_contig21612:1020..13071691683165.899147-CDS-L-elsbetiae_contig21612:1020..1307Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21612 1021..1307 +
1622815881.8716595-CDS-L-elsbetiae_contig21612:1937..20911622815881.8716595-CDS-L-elsbetiae_contig21612:1937..2091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21612 1938..2091 +
1691683165.9091485-CDS-L-elsbetiae_contig21612:1937..20911691683165.9091485-CDS-L-elsbetiae_contig21612:1937..2091Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21612 1938..2091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21612.6617.1prot_L-elsbetiae_contig21612.6617.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21612 1021..2091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21612.6617.1

>prot_L-elsbetiae_contig21612.6617.1 ID=prot_L-elsbetiae_contig21612.6617.1|Name=mRNA_L-elsbetiae_contig21612.6617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
SLGGTVHQDFPPVVYHERYSAAPWPSKHSFPMSKFSDLAELLAKPDGPLG
AAGPLAMSSAFRPLDQPPHEWLEAVHDPEYYRAFLGGTLDEKAVRRIGLP
YSESLVDRTLLEVSGTVLTARLALKYGLACNLAGGTHHAHKGFGSG*
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mRNA from alignment at L-elsbetiae_contig21612:1021..2091+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21612.6617.1 ID=mRNA_L-elsbetiae_contig21612.6617.1|Name=mRNA_L-elsbetiae_contig21612.6617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1071bp|location=Sequence derived from alignment at L-elsbetiae_contig21612:1021..2091+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGGAGGCACCGTGCATCAGGACTTCCCCCCGGTCGTGTACCACGA ACGCTACAGCGCGGCACCATGGCCCTCGAAGCACAGCTTCCCCATGTCTA AGTTCAGCGACCTCGCGGAGCTTCTCGCCAAGCCCGATGGGCCGCTCGGC GCTGCCGGTCCGCTCGCCATGAGCTCTGCGTTCCGGCCTCTGGACCAGCC TCCACACGAGTGGCTCGAGGCGGTTCACGATCCCGAGTACTATCGAGCGT TTCTGGGGGGGACGCTGGACGAGAAGGCTGTGCGCAGGTAGGTGATACAT ACGCCCGCGCCGCCCGCGCCGCAGGAACCACGTTCGTTTGCTTTTTTTTT TTTTCTAGTTATGTACGCACTTCAGAAGTATATTACGGTGATTTATCTCA TATAGAAGTACCGTATATGACACAAGATAACACACCCCCTGGGCTGACTT TCCAGGGGGTGTGTTATCTTGTGTCATCCTCCTATACGGTAAGCATGACG GGATTATTTTGTTTTCTTCTCTTCGATACGTTGTCGTTGTGGGTTTGTAG AGAACTGGAAACGTTGTTGGTCTTGAGTCTTGCGGTCCCGTCCGTAAATT GCACCAAGTACCATGAAAAGATGTTGAGATGTTGCTGACCGCACGGGGCC CCCTCTCTTGCGCAGCAGGCAGGGCAGGCGTCTAATATTGTAGTCTTATC CGTTCTGTGGGTAATTTTGTAATTTTGCGTGGTTTTTCGCCCGCCCCCCC CTGCCCTTCCTCCCTTGTCGCAATCACCCAATTTCTCAACAAACGAAGGA ACCGACAAGCTGTACACCCTCACTCTCACCAAGCCTCTGCCTTTGTCCTC TTTTGGTCTTTCTTTGCCCGCCTGGCCCCTTGTCTTGATTTCCCCTTGTC TTGCCCTCTCTTCGCAGAATCGGCCTTCCGTACAGCGAGAGCTTGGTGGA CAGGACTCTCCTGGAGGTGTCGGGCACCGTTCTGACCGCCCGCCTCGCCT TGAAGTACGGCCTGGCGTGCAACTTGGCAGGGGGCACACACCATGCCCAC AAAGGCTTCGGTAGCGGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21612:1021..2091+

>mRNA_L-elsbetiae_contig21612.6617.1 ID=mRNA_L-elsbetiae_contig21612.6617.1|Name=mRNA_L-elsbetiae_contig21612.6617.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig21612:1021..2091+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGGAGGCACCGTGCATCAGGACTTCCCCCCGGTCGTGTACCACGA
ACGCTACAGCGCGGCACCATGGCCCTCGAAGCACAGCTTCCCCATGTCTA
AGTTCAGCGACCTCGCGGAGCTTCTCGCCAAGCCCGATGGGCCGCTCGGC
GCTGCCGGTCCGCTCGCCATGAGCTCTGCGTTCCGGCCTCTGGACCAGCC
TCCACACGAGTGGCTCGAGGCGGTTCACGATCCCGAGTACTATCGAGCGT
TTCTGGGGGGGACGCTGGACGAGAAGGCTGTGCGCAGAGCCTCGGAGGCA
CCGTGCATCAGGACTTCCCCCCGGTCGTGTACCACGAACGCTACAGCGCG
GCACCATGGCCCTCGAAGCACAGCTTCCCCATGTCTAAGTTCAGCGACCT
CGCGGAGCTTCTCGCCAAGCCCGATGGGCCGCTCGGCGCTGCCGGTCCGC
TCGCCATGAGCTCTGCGTTCCGGCCTCTGGACCAGCCTCCACACGAGTGG
CTCGAGGCGGTTCACGATCCCGAGTACTATCGAGCGTTTCTGGGGGGGAC
GCTGGACGAGAAGGCTGTGCGCAGAATCGGCCTTCCGTACAGCGAGAGCT
TGGTGGACAGGACTCTCCTGGAGGTGTCGGGCACCGTTCTGACCGCCCGC
CTCGCCTTGAAGTACGGCCTGGCGTGCAACTTGGCAGGGGGCACACACCA
TGCCCACAAAGGCTTCGGTAGCGGGTAAAATCGGCCTTCCGTACAGCGAG
AGCTTGGTGGACAGGACTCTCCTGGAGGTGTCGGGCACCGTTCTGACCGC
CCGCCTCGCCTTGAAGTACGGCCTGGCGTGCAACTTGGCAGGGGGCACAC
ACCATGCCCACAAAGGCTTCGGTAGCGGGTAA
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