mRNA_L-elsbetiae_contig216.6614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig216.6614.1
Unique NamemRNA_L-elsbetiae_contig216.6614.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig216.6614.1 vs. uniprot
Match: D8LTH8_ECTSI (Inositol-1-monophosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTH8_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 4.190e-34
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:   49 MSMSGCPMARVPEVAGIVLAVMFFAKACKAFAASSAGSNQAMSGRKHSVPDELTKCEGALLERLQLATDVALQAGAAMKAVINLKKEGIVHKGATDL 339
            MSMSGCPMARVPE+AG+VLAV+  AK CKAF ASS G+  + S   H VP EL+KCE ALLERL+LAT+VALQAGAAMK VIN KKEGIVHKGATDL
Sbjct:    1 MSMSGCPMARVPEIAGVVLAVVCLAKVCKAFTASSRGALSSGSTNNHGVPQELSKCESALLERLKLATEVALQAGAAMKLVINTKKEGIVHKGATDL 97
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig216.6614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTH8_ECTSI4.190e-3475.26Inositol-1-monophosphatase n=2 Tax=Ectocarpus TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig216contigL-elsbetiae_contig216:14111..18833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue3e-31
Seed eggNOG ortholog2880.D8LTH8
KEGG rclassRC00078
KEGG koko:K01092
KEGG ReactionR01185,R01186,R01187
KEGG Pathwayko00521,ko00562,ko01100,ko04070,map00521,map00562,map01100,map04070
KEGG ModuleM00131
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Inositol-1-monophosphatase
EggNOG OGsCOG0483@1,KOG2951@2759
EC3.1.3.25
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Ec32 ortholog descriptionInositol monophosphatase
Ec32 orthologEc-02_005670.1
Exons2
Model size1184
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig216.6614.1prot_L-elsbetiae_contig216.6614.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig216 14159..17991 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.5711844-UTR-L-elsbetiae_contig216:14110..141581622815881.5711844-UTR-L-elsbetiae_contig216:14110..14158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig216 14111..14158 +
1691683165.6517308-UTR-L-elsbetiae_contig216:14110..141581691683165.6517308-UTR-L-elsbetiae_contig216:14110..14158Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig216 14111..14158 +
1622815881.6022053-UTR-L-elsbetiae_contig216:17991..188331622815881.6022053-UTR-L-elsbetiae_contig216:17991..18833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig216 17992..18833 +
1691683165.6868677-UTR-L-elsbetiae_contig216:17991..188331691683165.6868677-UTR-L-elsbetiae_contig216:17991..18833Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig216 17992..18833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.582346-CDS-L-elsbetiae_contig216:14158..143161622815881.582346-CDS-L-elsbetiae_contig216:14158..14316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig216 14159..14316 +
1691683165.6624463-CDS-L-elsbetiae_contig216:14158..143161691683165.6624463-CDS-L-elsbetiae_contig216:14158..14316Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig216 14159..14316 +
1622815881.5919948-CDS-L-elsbetiae_contig216:17855..179911622815881.5919948-CDS-L-elsbetiae_contig216:17855..17991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig216 17856..17991 +
1691683165.675273-CDS-L-elsbetiae_contig216:17855..179911691683165.675273-CDS-L-elsbetiae_contig216:17855..17991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig216 17856..17991 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig216.6614.1

>prot_L-elsbetiae_contig216.6614.1 ID=prot_L-elsbetiae_contig216.6614.1|Name=mRNA_L-elsbetiae_contig216.6614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MSMSGCPMARVPEVAGIVLAVMFFAKACKAFAASSAGSNQAMSGRKHSVP
DELTKCEGALLERLQLATDVALQAGAAMKAVINLKKEGIVHKGATDL*
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mRNA from alignment at L-elsbetiae_contig216:14111..18833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig216.6614.1 ID=mRNA_L-elsbetiae_contig216.6614.1|Name=mRNA_L-elsbetiae_contig216.6614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4723bp|location=Sequence derived from alignment at L-elsbetiae_contig216:14111..18833+ (Laminarionema elsbetiae ELsaHSoW15)
GCGACTTGGCACGCCAGACGCGCTTCTCTTCTGACTGCTGCTTCTGTCAT
GTCGATGAGTGGATGCCCCATGGCCCGCGTACCGGAAGTCGCCGGTATCG
TGCTTGCCGTGATGTTCTTCGCGAAGGCGTGCAAGGCATTCGCCGCCTCG
TCAGCGGGTTCAAATCAAGCGATGTCGGGCAGGAAGCATAGCGTGCCCGA
TGAGCTGTGAGTGGAGCACTGAAAGTCGGTGTCATGCCGTGTTATTAAAT
TGCGCATCGGTTGTCTCTCGGAGAGTAGATTCATTACGCACTCATTTGCG
AATGTTTTATGGGTTGAGTCCGCGTCGTACGGGCAGCATGACTATCCACA
CAGAAGGACGCACACAGCATGACGTACAGCATGATTAGATCTAGTCTAGA
TCATTCTTGTACATGCAGATCAGAGGTGCGAACTTCCTGGATACGGTGTG
CAGCAGAATCCGCACTCAGCCTGCAATGAACATGTAGCCGATGAACAAGG
TTACCGCATTTTCTACATACATATAGCTCGGCGCACACACAGATAGGGGC
TTGGCTGTGGCGCTGTGGCTGAGGAGGAAAATACATGAACGAACAGGGAG
TCACGAGGAATGTTGTAAAAGGCTCAATCAAACAGGGAGGTCAAGTGATG
GATCCCGCAAATACATACATACCTATATTTAGGCTCAAAACGGAGAGGTC
GATCGATGGGCCCCGCAAAAACCATTGCGGTTTTTTATCCCCCGCAATGA
CCCGCTGATGCCTATTGTATTGATCCTACATACACATTGACAATGACTAT
AAAAGCGTAGCTTGGAAGCTGACTGAAATTCCGCCTGCGGTCTTTCTTTA
GTCATTTTTAGAGGTAGACCTGCACGCTATGTAAGGGACAGGCCTCGAAA
GCCGGTTTCTTTCTCGGGCGGGGCTGATTTTTCTGACCGCTGCTGCCGAG
CACACAGAACCAAATCCACCATGAGCGAACTCGCCTCGCACTCGGCACGA
AAGAGACGGGCTATGTATGCAGGTGGGCTTAACTATCAAAATAAGGGCCT
TGGGTGCGAAGGAGGGGGTTCAATCTCGTGCTACAAGTCCAAAACGCGTG
TTTCTCGACCGGGGGCTGGCTTGTCAGAAAAACAATATACCCTCCATACC
GCCGGCGCTTGGTCATCACAGCTTTGCTACATATAAATAGCTAGCGTATA
CCACACCTCTCTGCATATGTAAGACTGGATGTGTCTGGCAATAATCCGCT
TTCGATTTCATGAGGTGTAGGCCGAGTATTGCTGATTCTCCGGGTTTGAA
AAGTGCTGGTTGCGGGGGGGTTGCTTTTTGGTGGCGAAAGCGCCGTTGCC
ACTTTCCTGAAAAAAATACAAAAAAAAATGTCCACCTCCAAGTGTATTAT
TATGCTGCTCTATCACCTCCTCCTGTGTGACCCCAGTTGGTTCTAGTTGT
ACAGACAAATGCACTGCAAAGTGTAGTACCTCTAAGTACACCGCAAGGTG
TAGTACACGTTTCCACTTGGGGGGACTGTCGCCAAAATAAATGGGAAGGA
CACACACACACACACACACGCACCAAACCACCGCTGGAATTTGTTTGAGG
CTGGAGATTCAGCAATACTCGGCCAACACCTCATGAAATCGAAGGTAGAT
TTTTGTCAGATACAGTCAGTCATATGCAGAGGGATGTGGTATGGGGTAGC
ATAGACCTGTAGCAACTCTGTGACGAGCAAGCGCCGGCGATATGGAGGGT
ACATATATGTTGTTTCTGACGAATCAGCCCCTGGCTGAGCAACACGCGTT
CTGGACTGTACATAGTACGAGATTGAACCCCTCCTGCACCAAGGCTTATT
GTGATGGGTGTACCCCATAACAGCTCTTCGATACCGAGGGAGAGGCCAGC
TCGCTGTGGTGGACTTGGTTCTGTGTGCTCGGTAGTAGGTCACAAAAAAT
GCCGTCCCCAGCGAGAAAGAGACCCTTCCGGCTTTTGAGACCTGTCCCTT
GCATCGAAACGCGGCGGAGCTTCGGTCAGCTTCCAAGCTACGCTTTATAG
TCATTGTCCATGGGCTGATGCGAATGTATGTAGATGTACAAGACTCCCTT
TCAGACGTTGCTCATGGATAAACACTCCAGAGGGTCAAGCAAGAGGGCAG
GCCAAGCGTCCGATACCTGCATGCTGTTCTGCCCGACTTGGGAGCGTTTT
CAACGATTTCAAGTATACTCCTAGTTTGAACACCGGGGGAAAGAAACATG
TTGAACTCTTCTGATATTTTAGGTTGTTTTTCTGCTCGCTTCGCCAAATA
TTACGTCACTGTATGGAATACCGTTTGAACCCCATATTGAGTCCTTGCTC
TAGTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTATTTTTAAACAAAA
AGCGCCGGCGCAACATTTTTTCGCCGGCTTCCGCGCGCGCGCGCGTGTGT
GTGTTTTGCCATCGCCAGGAATTTTTACAAAAACAGCAAGATAATAAAGC
TAGATAAGAAAGCTAGATCACTTGTTGGCTGCTGTTCGAGTCGCAAAACA
CTATTGTATTTCTGAGGGAAGGGCTGGCTGTTTCTTGCGTGGGACCTCAT
CGCGACAAACAGCTGCCACACTAAAGATTCAGAACCCGCTTCACGTAGCC
ACGTGCGTGGCTTGCCAACAGACGTGAACAGACCACAGACCACAGATCCT
GCACCTAGGGAAGCGAGAACCACCGACCGTGCGTGCCATGAACCTTACAG
GAAAACTGTCCTGCCTTCAGCTGTCTCGAGGTGGTCGAGATAGGCGAAGA
GTTGTCGAGTGGGGTGCTGTGCGTGCGTGCCATCTCAGCCTTACAGGGTT
GTCTTTTGTCGTTGGCCGGCGGACCGTTGAAATAAAGAGCTCGAAGAAAA
AAACGTTGAAATTTGCAAGAAAGAGCTGAACAACTGACGTTTGTCAACAT
CAGCTGTTCAAGCTGTTCAAGCGGAAGGGGGCACAAAGCCCAAGCACCTG
GGCTGCTCACAACGACCACGGTTCCCGTATCTGTTACTAGATGTATGTAT
GTATGTAAGCGCATATTCGCGAGCATCCATCCGATGATGATGCAAGATTC
CCTGTTCATGTATCACTTCTTGAGAGCACTTTTAGTTTTATGAATATAAT
CAAAGCGATCGCTCGTGACGGTGACGGTAGCGAACAAACAAGCAGTGTTT
GTTACGCTCGCGCTGCTGGTGGTGGTGTTGGGTAAGACCAACGCGAGGGC
CAGACCCTTTGAGTTGTGATTTTCGCACACGGCGTGGGTCTAACTCGCCA
AACAAACTAGTTTGACCGGTTTTAACCGGCTCCGTCCGCGCGTGTATGGG
CGCGCTGCCTGCTGTGCTGCCGCCTCGTTACACGGCAGTGTCGACGTTTC
ACTCGCGAATCAGGAGGGACAGCCGTAGGGTTAAAGAATGTCGGCGGAGG
CCTTATGGCCTAAATACGAGCGATTTCTTCACGTAAACTACGAAACACAC
GGGATATAGTATGAAAACGGCTACAAGCGGGGGGTCCGTTTTGGATTTAG
GGTTAGTTAGGGTTAGGATATATATAGAAGTATATATATATATTATTCTT
CACATTTTTATGTAGGGTTACGGAATCTCTATTAGGGCTACGGAACCTCT
GCCCTTCGGTTTCCTAGATAAAAACCCAGTTTCTTCGTGAAGGTGGTTCG
AATCATGGTGTTCAATTCACCCGCACGTTTTCACGATTCGATCAGGACCA
AGTGCGAAGGGGCGCTTCTCGAGCGGCTGCAGCTGGCGACCGATGTCGCG
CTCCAGGCGGGCGCCGCCATGAAGGCGGTCATCAACCTCAAGAAGGAGGG
TATCGTGCACAAGGGGGCCACCGACCTGTGAGCACAATGCAGCCTTTGTG
TACAGCTGCTGGGCCGCTCGTGACGACGGCCGCTGTTACCACCCACCTTC
GACGGCCATCAACTACACTCCCATTTTCTACCCGCCTGTAGGCTATCGTA
GTGTCCATAAATGTATGTACGCCAGTGCGGTTGAACTTATGCAAAAAGAA
GCGCCACACGTGCCAACATGCTCCCTCTTTCCTTTCCTCCCTCTATTGCA
GCATCACAGCTTGCTTGGGGGAAAACAGCAGCGTATGCACGATTTGAGGT
TTTTGTTCTCCTTAACATTTGTTATCACTCTTTAAATTACACACAAGTAC
CGGACAACGAGACGAAGAAGAAAAAAAAACGAGCGATCGATTCCATACGT
TGGAGTGAAGCACAACCAAGCCCCAACCTGGCCGACGAGCAGATGTACTT
GCACAACTAACTACGAGGGCAGACGCCCCGGGACTCTTTGATGAAGGAAC
GGCTTTCCGGTGCGGAGGAGAGCTCCAGCAACATATAAAACATCAACTCT
ATGCTTATGCACCCATTCCGATCTCCCTGAGAGCCGCTGTCACTACTACC
GACTTGTGCTTACCGTAGGCGGACGCTGAATTTATTGTTGTTTTTCTGCC
CGAAACGGAGTAAGGCTTGCCGTTCGGGGCTCGTGCCTTCCCTCCCAGCC
TGAAAGTGCTCTGCGAGTCCTCCCTTCTCTGTCTCCAACAACTGTGTATG
TACCCTGCTCCTCTCCCTGTTTCTCAAAGATGACTCTCTTCCCCTCGGTT
CTCCACTATTGTGAGCTAGCTTGTGAGCTAGCTAGCTGTGCGTGATGCCC
GAGTTGTTATTCTCCCCCGTTGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig216:14111..18833+

>mRNA_L-elsbetiae_contig216.6614.1 ID=mRNA_L-elsbetiae_contig216.6614.1|Name=mRNA_L-elsbetiae_contig216.6614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig216:14111..18833+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGATGAGTGGATGCCCCATGGCCCGCGTACCGGAAGTCGCCGGTAT
CGTGCTTGCCGTGATGTTCTTCGCGAAGGCGTGCAAGGCATTCGCCGCCT
CGTCAGCGGGTTCAAATCAAGCGATGTCGGGCAGGAAGCATAGCGTGCCC
GATGAGCTATGTCGATGAGTGGATGCCCCATGGCCCGCGTACCGGAAGTC
GCCGGTATCGTGCTTGCCGTGATGTTCTTCGCGAAGGCGTGCAAGGCATT
CGCCGCCTCGTCAGCGGGTTCAAATCAAGCGATGTCGGGCAGGAAGCATA
GCGTGCCCGATGAGCTGACCAAGTGCGAAGGGGCGCTTCTCGAGCGGCTG
CAGCTGGCGACCGATGTCGCGCTCCAGGCGGGCGCCGCCATGAAGGCGGT
CATCAACCTCAAGAAGGAGGGTATCGTGCACAAGGGGGCCACCGACCTGT
GAGACCAAGTGCGAAGGGGCGCTTCTCGAGCGGCTGCAGCTGGCGACCGA
TGTCGCGCTCCAGGCGGGCGCCGCCATGAAGGCGGTCATCAACCTCAAGA
AGGAGGGTATCGTGCACAAGGGGGCCACCGACCTGTGA
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