mRNA_L-elsbetiae_contig21594.6612.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21594.6612.1
Unique NamemRNA_L-elsbetiae_contig21594.6612.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21594.6612.1 vs. uniprot
Match: A0A6H5KKZ1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ1_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 8.680e-38
Identity = 81/126 (64.29%), Postives = 97/126 (76.98%), Query Frame = 3 
Query:   18 MDPHNKRCAFHTLEATAKVLPVLLEDGRKQFLDTVVLLVDSQKGLYNGQKAMWTHIPGAPEQRQRVCQLLMANDTFLAVAALLEKQTERLGRQAQLRERAKAAAVKMARRAQVAQAEARQATLNAS 395
            M+P+ K+ AF TLEA A+VL  LL+DGR +FL+T+VLLVD+ K LYNGQKAMWTH PGAPEQR +VC ++M N TF A A LLE+Q  RL  QA+ RE  KA A + ARRAQ+AQAEARQA  NAS
Sbjct:    1 MEPYQKKHAFATLEACARVLSPLLKDGRMEFLETLVLLVDATKILYNGQKAMWTHFPGAPEQRTKVCMIMMDNGTFGAAADLLEQQAARLESQARRREGVKATAAETARRAQLAQAEARQAAQNAS 126
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BLAST of mRNA_L-elsbetiae_contig21594.6612.1 vs. uniprot
Match: D7G2G5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2G5_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.630e-8
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 3 
Query:  198 EQRQRVCQLLMANDTFLAVAALLEKQTERLGRQAQLRERAKAAAVKMARRAQVAQAEARQATLNA 392
            +QR +VC ++M N TF A A LLE+Q  RL  QA+ RE  KAAA + ARRAQ+AQAEARQA  NA
Sbjct:   84 QQRAKVCTIMMDNGTFGAAADLLEQQAARLDSQARRREGVKAAAAETARRAQLAQAEARQAAQNA 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21594.6612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKZ1_9PHAE8.680e-3864.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G2G5_ECTSI1.630e-860.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21594contigL-elsbetiae_contig21594:189..1339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005890.1
Exons2
Model size519
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21594.6612.1prot_L-elsbetiae_contig21594.6612.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21594 206..1339 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.394958-UTR-L-elsbetiae_contig21594:188..2051622815881.394958-UTR-L-elsbetiae_contig21594:188..205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21594 189..205 +
1691683165.5587258-UTR-L-elsbetiae_contig21594:188..2051691683165.5587258-UTR-L-elsbetiae_contig21594:188..205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21594 189..205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.409707-CDS-L-elsbetiae_contig21594:205..3881622815881.409707-CDS-L-elsbetiae_contig21594:205..388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21594 206..388 +
1691683165.5682018-CDS-L-elsbetiae_contig21594:205..3881691683165.5682018-CDS-L-elsbetiae_contig21594:205..388Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21594 206..388 +
1622815881.4210532-CDS-L-elsbetiae_contig21594:1021..13391622815881.4210532-CDS-L-elsbetiae_contig21594:1021..1339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21594 1022..1339 +
1691683165.5773423-CDS-L-elsbetiae_contig21594:1021..13391691683165.5773423-CDS-L-elsbetiae_contig21594:1021..1339Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21594 1022..1339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21594.6612.1

>prot_L-elsbetiae_contig21594.6612.1 ID=prot_L-elsbetiae_contig21594.6612.1|Name=mRNA_L-elsbetiae_contig21594.6612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
MDPHNKRCAFHTLEATAKVLPVLLEDGRKQFLDTVVLLVDSQKGLYNGQK
AMWTHIPGAPEQRQRVCQLLMANDTFLAVAALLEKQTERLGRQAQLRERA
KAAAVKMARRAQVAQAEARQATLNASDLSSGSGGSGSGSGGGGGGGGAGG
GEGGDSARAVAARAVEA
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mRNA from alignment at L-elsbetiae_contig21594:189..1339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21594.6612.1 ID=mRNA_L-elsbetiae_contig21594.6612.1|Name=mRNA_L-elsbetiae_contig21594.6612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1151bp|location=Sequence derived from alignment at L-elsbetiae_contig21594:189..1339+ (Laminarionema elsbetiae ELsaHSoW15)
ACCAGTCCGTGACCAAGATGGACCCACACAACAAGAGATGCGCCTTCCAC
ACGCTGGAGGCCACGGCCAAGGTGCTGCCCGTCCTGCTCGAGGACGGCCG
CAAGCAGTTCCTGGACACCGTCGTGCTGCTGGTGGACTCGCAGAAGGGCC
TGTACAACGGCCAGAAGGCCATGTGGACCCACATTCCGGGGGCCCCCGAG
GTGAGACCTGTTTGGCCGGGGGCGGGCGGGGAGGAAGCTGTGCTCGTGAC
GATGCATGATGGGGGCTTGTCGTGTGTAGTCGTCGTTTCATGCGGGTAGG
CGCGTCGCATTTCCTGTAGAGCTTTGATTCCCGCAGAGCTTTGATGGAAG
GCGGGAGAAGGGGGAGAGATGCGGGCTTCGAAAAGACGACGACCGGGACA
CACGATCCCATCCCATCCGGCCCCGAAGCGCGTGTGTGTTTGTGCGTGCG
TGTTGTATTTTGCCTCTTTTTTCTCGCATATGTAAGTATGTATGTGTACA
GTGCCACGTTTGAGCTTTGTACTTACGTACAATAGCACGAGCTAAGCACG
CAGGGGTGAGAAGCGTGGGAGGGTTGGGGACGCTTTGCTCTGCCCGGTGG
CACCGATTCGGTGGACCCCACAAAAATGATAAGAAGAAGTCGTGTTTTTT
AGGGTTTTGTCTGTATTTGCATGCATCAGAGGCGTTCCCCCCCTTCGTGT
GCGCAGACATTTTGATTAGACAGTGACGAAAAAAAAAGCGCCTTTCCTTA
AGGTGGTATGTATGACCCGTCCATCGCCGCCCCCCCCCCCCTACCCCCCC
CCGACCCGGACTCTTTTGGCCGTCACACAACAGCAACGGCAGAGAGTCTG
CCAGCTCCTGATGGCGAACGACACGTTTCTGGCCGTCGCGGCCCTCCTCG
AGAAGCAGACCGAGCGCCTGGGCAGACAGGCGCAGCTCCGCGAGCGGGCG
AAGGCGGCCGCGGTGAAGATGGCCCGCCGGGCGCAGGTCGCCCAGGCGGA
GGCGAGGCAGGCCACCCTTAACGCCTCGGATCTGAGCTCTGGCTCCGGCG
GCAGCGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGGAGGA
GGAGAAGGAGGCGACTCGGCAAGGGCTGTCGCGGCGAGGGCGGTGGAGGC
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21594:189..1339+

>mRNA_L-elsbetiae_contig21594.6612.1 ID=mRNA_L-elsbetiae_contig21594.6612.1|Name=mRNA_L-elsbetiae_contig21594.6612.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig21594:189..1339+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGACCCACACAACAAGAGATGCGCCTTCCACACGCTGGAGGCCACGGC
CAAGGTGCTGCCCGTCCTGCTCGAGGACGGCCGCAAGCAGTTCCTGGACA
CCGTCGTGCTGCTGGTGGACTCGCAGAAGGGCCTGTACAACGGCCAGAAG
GCCATGTGGACCCACATTCCGGGGGCCCCCGAGATGGACCCACACAACAA
GAGATGCGCCTTCCACACGCTGGAGGCCACGGCCAAGGTGCTGCCCGTCC
TGCTCGAGGACGGCCGCAAGCAGTTCCTGGACACCGTCGTGCTGCTGGTG
GACTCGCAGAAGGGCCTGTACAACGGCCAGAAGGCCATGTGGACCCACAT
TCCGGGGGCCCCCGAGCAACGGCAGAGAGTCTGCCAGCTCCTGATGGCGA
ACGACACGTTTCTGGCCGTCGCGGCCCTCCTCGAGAAGCAGACCGAGCGC
CTGGGCAGACAGGCGCAGCTCCGCGAGCGGGCGAAGGCGGCCGCGGTGAA
GATGGCCCGCCGGGCGCAGGTCGCCCAGGCGGAGGCGAGGCAGGCCACCC
TTAACGCCTCGGATCTGAGCTCTGGCTCCGGCGGCAGCGGCAGCGGCAGC
GGCGGCGGCGGCGGCGGCGGCGGCGCAGGAGGAGGAGAAGGAGGCGACTC
GGCAAGGGCTGTCGCGGCGAGGGCGGTGGAGGCGCAACGGCAGAGAGTCT
GCCAGCTCCTGATGGCGAACGACACGTTTCTGGCCGTCGCGGCCCTCCTC
GAGAAGCAGACCGAGCGCCTGGGCAGACAGGCGCAGCTCCGCGAGCGGGC
GAAGGCGGCCGCGGTGAAGATGGCCCGCCGGGCGCAGGTCGCCCAGGCGG
AGGCGAGGCAGGCCACCCTTAACGCCTCGGATCTGAGCTCTGGCTCCGGC
GGCAGCGGCAGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGGAGG
AGGAGAAGGAGGCGACTCGGCAAGGGCTGTCGCGGCGAGGGCGGTGGAGG
CG
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