mRNA_L-elsbetiae_contig2159.6611.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2159.6611.1
Unique NamemRNA_L-elsbetiae_contig2159.6611.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2159.6611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2159contigL-elsbetiae_contig2159:17152..18187 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size453
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2159.6611.1prot_L-elsbetiae_contig2159.6611.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2159 17152..18077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.256999-CDS-L-elsbetiae_contig2159:17151..175851622815881.256999-CDS-L-elsbetiae_contig2159:17151..17585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 17152..17585 -
1691683165.4762678-CDS-L-elsbetiae_contig2159:17151..175851691683165.4762678-CDS-L-elsbetiae_contig2159:17151..17585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 17152..17585 -
1622815881.269638-CDS-L-elsbetiae_contig2159:18058..180771622815881.269638-CDS-L-elsbetiae_contig2159:18058..18077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 18059..18077 -
1691683165.486927-CDS-L-elsbetiae_contig2159:18058..180771691683165.486927-CDS-L-elsbetiae_contig2159:18058..18077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 18059..18077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.2813976-UTR-L-elsbetiae_contig2159:18077..181871622815881.2813976-UTR-L-elsbetiae_contig2159:18077..18187Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2159 18078..18187 -
1691683165.5011072-UTR-L-elsbetiae_contig2159:18077..181871691683165.5011072-UTR-L-elsbetiae_contig2159:18077..18187Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2159 18078..18187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2159.6611.1

>prot_L-elsbetiae_contig2159.6611.1 ID=prot_L-elsbetiae_contig2159.6611.1|Name=mRNA_L-elsbetiae_contig2159.6611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
MGQDEAGAFQQHKCVSPRPTASCASHGTPPPRRRPVEIGGAPPTYSAHML
MATRAPVCSVEEEGSGVNEMSHPISGPNGVGAGAEAPSSYQPQAQQRPGA
APSSYQPNVQQGPVAAPSSYQPQVQQSPVAAPSSYQPHMQQRSGAAPSSY
Q
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mRNA from alignment at L-elsbetiae_contig2159:17152..18187-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2159.6611.1 ID=mRNA_L-elsbetiae_contig2159.6611.1|Name=mRNA_L-elsbetiae_contig2159.6611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1036bp|location=Sequence derived from alignment at L-elsbetiae_contig2159:17152..18187- (Laminarionema elsbetiae ELsaHSoW15)
TAGTTTGCTTTGACTTGGCAGGCTCGGTTGCACGCCTGGCTGAGACTGGA
GAAGACGTACTCTCTACCTGAACGACGTCGACGAGCGCAAGGCTGTAAGA
GTCCGCCGAGATGGGTCAAGATGAGGCAGGTAGTGAGAAAATAAAATGAA
GGCAGCAAACGTTTTTGTCCCGTTTTGCGCGTTTCGGTACGCTTTTAAGT
GAGATAATGGTGAGGCTGGTTGTTTGTGCGTGTTTGCATCATAGTACAAT
TGTTGAGGTGTTTTGGGATAAACCGATAACGTTAGTCTGTGCGATATTAG
GCCAATATAAATACTACAGTGCCGGCCCACTCAAATGACACAGCTATTTT
GAGCATGGCTCAAAACCATATTTTGCCGCCACCTCAAAACCTTATTTTGT
CGCCACCATTGAGCACAGGCTATTTTACACCAGATACTGCGGAGTAGGAT
ATCTTACCTTGTCGAAAATCTGAGACTGGATTTGTTACGAAGGCATTTGT
TACGAGGAGGCCGGCACTATGTTGGTTCCTTGCAGTAGAAAAGCAGTGTT
TTTTTGTTATTATAATACTCCATACCCCCCGCGACAACTTTGCTATACAC
AGGGGCGTTTCAGCAGCACAAGTGCGTATCACCGAGGCCCACAGCCTCCT
GCGCAAGTCATGGAACCCCCCCACCCCGGCGCCGCCCTGTCGAGATCGGT
GGTGCACCACCAACGTACAGTGCACACATGCTCATGGCGACAAGGGCGCC
GGTTTGCAGTGTCGAGGAGGAGGGATCGGGCGTGAACGAGATGTCGCACC
CGATCTCTGGCCCCAACGGCGTCGGCGCGGGGGCGGAGGCGCCATCTTCG
TACCAGCCACAAGCGCAGCAGAGGCCCGGTGCTGCGCCATCTTCGTACCA
GCCAAACGTGCAGCAGGGCCCCGTTGCTGCGCCATCTTCGTACCAGCCAC
AAGTGCAGCAGAGTCCGGTTGCTGCACCATCTTCGTACCAGCCACACATG
CAGCAGAGGTCCGGTGCTGCGCCATCTTCGTACCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2159:17152..18187-

>mRNA_L-elsbetiae_contig2159.6611.1 ID=mRNA_L-elsbetiae_contig2159.6611.1|Name=mRNA_L-elsbetiae_contig2159.6611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig2159:17152..18187- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGTCAAGATGAGGCAGATGGGTCAAGATGAGGCAGGGGCGTTTCAGC
AGCACAAGTGCGTATCACCGAGGCCCACAGCCTCCTGCGCAAGTCATGGA
ACCCCCCCACCCCGGCGCCGCCCTGTCGAGATCGGTGGTGCACCACCAAC
GTACAGTGCACACATGCTCATGGCGACAAGGGCGCCGGTTTGCAGTGTCG
AGGAGGAGGGATCGGGCGTGAACGAGATGTCGCACCCGATCTCTGGCCCC
AACGGCGTCGGCGCGGGGGCGGAGGCGCCATCTTCGTACCAGCCACAAGC
GCAGCAGAGGCCCGGTGCTGCGCCATCTTCGTACCAGCCAAACGTGCAGC
AGGGCCCCGTTGCTGCGCCATCTTCGTACCAGCCACAAGTGCAGCAGAGT
CCGGTTGCTGCACCATCTTCGTACCAGCCACACATGCAGCAGAGGTCCGG
TGCTGCGCCATCTTCGTACCAGGGGCGTTTCAGCAGCACAAGTGCGTATC
ACCGAGGCCCACAGCCTCCTGCGCAAGTCATGGAACCCCCCCACCCCGGC
GCCGCCCTGTCGAGATCGGTGGTGCACCACCAACGTACAGTGCACACATG
CTCATGGCGACAAGGGCGCCGGTTTGCAGTGTCGAGGAGGAGGGATCGGG
CGTGAACGAGATGTCGCACCCGATCTCTGGCCCCAACGGCGTCGGCGCGG
GGGCGGAGGCGCCATCTTCGTACCAGCCACAAGCGCAGCAGAGGCCCGGT
GCTGCGCCATCTTCGTACCAGCCAAACGTGCAGCAGGGCCCCGTTGCTGC
GCCATCTTCGTACCAGCCACAAGTGCAGCAGAGTCCGGTTGCTGCACCAT
CTTCGTACCAGCCACACATGCAGCAGAGGTCCGGTGCTGCGCCATCTTCG
TACCAG
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