mRNA_L-elsbetiae_contig2159.6610.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2159.6610.1
Unique NamemRNA_L-elsbetiae_contig2159.6610.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2159.6610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2159contigL-elsbetiae_contig2159:16385..16829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size446
Cds size432
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.3516297-UTR-L-elsbetiae_contig2159:16384..163971622815881.3516297-UTR-L-elsbetiae_contig2159:16384..16397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2159 16385..16397 +
1691683165.5385-UTR-L-elsbetiae_contig2159:16384..163971691683165.5385-UTR-L-elsbetiae_contig2159:16384..16397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2159 16385..16397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.3616471-CDS-L-elsbetiae_contig2159:16397..168291622815881.3616471-CDS-L-elsbetiae_contig2159:16397..16829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 16398..16829 +
1691683165.5497375-CDS-L-elsbetiae_contig2159:16397..168291691683165.5497375-CDS-L-elsbetiae_contig2159:16397..16829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 16398..16829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2159.6610.1prot_L-elsbetiae_contig2159.6610.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2159 16398..16829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2159.6610.1

>prot_L-elsbetiae_contig2159.6610.1 ID=prot_L-elsbetiae_contig2159.6610.1|Name=mRNA_L-elsbetiae_contig2159.6610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MAQHRASAALVPGTKMAQHRASAALVAGTKMAQQRASAALVPGTKMAKHP
PSGARVAGTKMAQHRATAALVAGTKMAQHRATAALVADTKMAQHRASAAH
VPGTKMAQHPPSAACVAGTKMAQHSASAALVAGTKMAQHRGSAA
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mRNA from alignment at L-elsbetiae_contig2159:16385..16829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2159.6610.1 ID=mRNA_L-elsbetiae_contig2159.6610.1|Name=mRNA_L-elsbetiae_contig2159.6610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=445bp|location=Sequence derived from alignment at L-elsbetiae_contig2159:16385..16829+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTGGTACGAAGATGGCGCAGCACCGGGCCTCTGCTGCACTTGTGCCTG
GTACGAAGATGGCGCAGCACCGGGCCTCTGCTGCGCTTGTGGCTGGTACG
AAGATGGCGCAGCAACGGGCCTCTGCTGCACTTGTGCCTGGTACGAAGAT
GGCGAAGCACCCGCCCTCTGGTGCACGTGTGGCTGGCACGAAGATGGCGC
AGCACCGGGCCACTGCTGCGCTTGTGGCTGGTACGAAGATGGCGCAGCAC
CGGGCCACTGCTGCGCTTGTGGCTGATACGAAGATGGCGCAGCACCGGGC
CTCTGCTGCACATGTCCCTGGCACGAAGATGGCGCAGCATCCGCCCTCTG
CTGCATGTGTGGCTGGTACGAAGATGGCGCAGCACTCGGCCTCTGCTGCA
CTTGTGGCTGGTACGAAGATGGCGCAGCACCGGGGCTCTGCTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2159:16385..16829+

>mRNA_L-elsbetiae_contig2159.6610.1 ID=mRNA_L-elsbetiae_contig2159.6610.1|Name=mRNA_L-elsbetiae_contig2159.6610.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig2159:16385..16829+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCAGCACCGGGCCTCTGCTGCACTTGTGCCTGGTACGAAGATGGC
GCAGCACCGGGCCTCTGCTGCGCTTGTGGCTGGTACGAAGATGGCGCAGC
AACGGGCCTCTGCTGCACTTGTGCCTGGTACGAAGATGGCGAAGCACCCG
CCCTCTGGTGCACGTGTGGCTGGCACGAAGATGGCGCAGCACCGGGCCAC
TGCTGCGCTTGTGGCTGGTACGAAGATGGCGCAGCACCGGGCCACTGCTG
CGCTTGTGGCTGATACGAAGATGGCGCAGCACCGGGCCTCTGCTGCACAT
GTCCCTGGCACGAAGATGGCGCAGCATCCGCCCTCTGCTGCATGTGTGGC
TGGTACGAAGATGGCGCAGCACTCGGCCTCTGCTGCACTTGTGGCTGGTA
CGAAGATGGCGCAGCACCGGGGCTCTGCTGCAATGGCGCAGCACCGGGCC
TCTGCTGCACTTGTGCCTGGTACGAAGATGGCGCAGCACCGGGCCTCTGC
TGCGCTTGTGGCTGGTACGAAGATGGCGCAGCAACGGGCCTCTGCTGCAC
TTGTGCCTGGTACGAAGATGGCGAAGCACCCGCCCTCTGGTGCACGTGTG
GCTGGCACGAAGATGGCGCAGCACCGGGCCACTGCTGCGCTTGTGGCTGG
TACGAAGATGGCGCAGCACCGGGCCACTGCTGCGCTTGTGGCTGATACGA
AGATGGCGCAGCACCGGGCCTCTGCTGCACATGTCCCTGGCACGAAGATG
GCGCAGCATCCGCCCTCTGCTGCATGTGTGGCTGGTACGAAGATGGCGCA
GCACTCGGCCTCTGCTGCACTTGTGGCTGGTACGAAGATGGCGCAGCACC
GGGGCTCTGCTGCA
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