mRNA_L-elsbetiae_contig2159.6609.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2159.6609.1
Unique NamemRNA_L-elsbetiae_contig2159.6609.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2159.6609.1 vs. uniprot
Match: A0A4C1W2T5_EUMVA (Uncharacterized protein (Fragment) n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1W2T5_EUMVA)

HSP 1 Score: 56.6 bits (135), Expect = 3.260e-5
Identity = 36/97 (37.11%), Postives = 49/97 (50.52%), Query Frame = 1 
Query:  751 VNAIPGIGHVKGLAHFACRDKKGGRKAMESATRSTAGFCGAVVXXXXXXXXXXXXXXXXXTNATDAAVSVADSAIHRELRLHGNLDKIKTVAQKPSI 1041
            +N+IPG+GHVKGLAH+   D KGG KAM  ATR+T    GA V                     D+A S+A + +H    + GN+D I    +K  +
Sbjct:    3 LNSIPGLGHVKGLAHYLTGDIKGGNKAMREATRTTV-VIGAGVVGSVAGPAGAALGVVSVGMLMDSATSIATNELHG---ICGNIDNIVEDVKKGKV 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2159.6609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4C1W2T5_EUMVA3.260e-537.11Uncharacterized protein (Fragment) n=1 Tax=Eumeta ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2159contigL-elsbetiae_contig2159:13658..16359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1042
Cds size1041
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2159.6609.1prot_L-elsbetiae_contig2159.6609.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2159 13658..16359 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.1784048-CDS-L-elsbetiae_contig2159:13657..137401622815881.1784048-CDS-L-elsbetiae_contig2159:13657..13740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 13658..13740 -
1691683165.4356363-CDS-L-elsbetiae_contig2159:13657..137401691683165.4356363-CDS-L-elsbetiae_contig2159:13657..13740Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 13658..13740 -
1622815881.1897583-CDS-L-elsbetiae_contig2159:14323..148341622815881.1897583-CDS-L-elsbetiae_contig2159:14323..14834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 14324..14834 -
1691683165.4456687-CDS-L-elsbetiae_contig2159:14323..148341691683165.4456687-CDS-L-elsbetiae_contig2159:14323..14834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 14324..14834 -
1622815881.2020078-CDS-L-elsbetiae_contig2159:14981..151431622815881.2020078-CDS-L-elsbetiae_contig2159:14981..15143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 14982..15143 -
1691683165.455705-CDS-L-elsbetiae_contig2159:14981..151431691683165.455705-CDS-L-elsbetiae_contig2159:14981..15143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 14982..15143 -
1622815881.2196763-CDS-L-elsbetiae_contig2159:16074..163591622815881.2196763-CDS-L-elsbetiae_contig2159:16074..16359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 16075..16359 -
1691683165.465875-CDS-L-elsbetiae_contig2159:16074..163591691683165.465875-CDS-L-elsbetiae_contig2159:16074..16359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 16075..16359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2159.6609.1

>prot_L-elsbetiae_contig2159.6609.1 ID=prot_L-elsbetiae_contig2159.6609.1|Name=mRNA_L-elsbetiae_contig2159.6609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=347bp
APSSYQAQVQQRPGAAPSSYQPHVQQRPSAAPSSYQAQVQQRVDAAPSSY
QPHVQQRVDAAPSSYQPPGAAPSSYQSHVQQRPGAAPASSPPPHKMGSDA
LFGIGARAEAPPSDQAHVQLRPGAAPSSYQPHVQQKPGTAPACSPPPHKM
GSDALCAPPKATNQLVCSQKKDAKQNKAGSDALFGPLKAAAQRLGGQKKD
AKQTMKNFKDSNPVCLLSRAVYHRARGDRKTAGNLCRRSAVNTVSIFGGV
VNAIPGIGHVKGLAHFACRDKKGGRKAMESATRSTAGFCGAVVGGVTGGP
PGAVLGYVAGTNATDAAVSVADSAIHRELRLHGNLDKIKTVAQKPSI
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mRNA from alignment at L-elsbetiae_contig2159:13658..16359-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2159.6609.1 ID=mRNA_L-elsbetiae_contig2159.6609.1|Name=mRNA_L-elsbetiae_contig2159.6609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2702bp|location=Sequence derived from alignment at L-elsbetiae_contig2159:13658..16359- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCATCTTCGTACCAGGCACAAGTGCAGCAGAGGCCCGGTGCTGCGCC
ATCTTCGTACCAGCCACACGTGCAGCAGAGGCCGAGTGCTGCGCCATCTT
CGTACCAGGCACAAGTGCAGCAGAGGGTGGATGCTGCGCCATCTTCGTAC
CAGCCACACGTGCAGCAGAGGGTGGATGCTGCGCCATCTTCGTACCAGCC
ACCCGGTGCTGCGCCATCTTCGTACCAGTCACATGTGCAGCAGAGACCCG
GTGCTGCGCCCGCGTCTTCACCCCCCCCCCACAAGGTGAGGGTCTTGGAG
TGAGCGATATGTAGGCCGAATCTCACCACTTGCTGTACGACGCCTTAAGG
TTGGGGTTTCGACTTGTATGAGCGCGGAATAAATTGCTGGTTCTGATTTT
CTTTTGAAATCAGTACAACAAGGACATGCGTACGGTTCTGAAAAATCTGA
TCTGGCGCAACGAGTTCGGCTGTCTTGACTACCTTTATCTTGAAGGGGAG
TGTCTTGGGTATCCTCGCGTGTCTGCTGTTTTCGGTGGTGCACACGGTGT
GTGTGTGTTTTTTTCGTGAAGCAAAACCCGACCAGATTTAGAGAAGATTG
GGCGTTTTGAGAGGGTTGGAACACACAAAGTTATCCAGATCGAACGTCAC
TGTACACCGATCCTGCTGTGCTCCGACTATATTCCTCCAAGGGTCTGATA
AGAGGTGATTAGCCGAAGACCCCGTCTCCAAATATTCCGAGTGCTCCATG
GCCGACCCTCGCTGCTGTCTACCCCATGCCTGCATGCGGCGACTTTTCCC
GACACACGAAAATTATGTTTCCTCAGTGCACGACTGGCTTTGTCAGTGCG
CCAAATCCCAGATTGCGCTCTGCTCTGCTAGCAACAGTATGCGCTACCTC
AGGATAGCCAACCCCAAGGATTGACTGAGGAATTTTGGTATCCGTTCTCG
TTTCAAAGCCCAAACGCCGATTTTTCTGTGAGAGAGGACAGCTGGAGAGA
AATCTACGGCATTTTTCGGTGGGAGATGACAGCAAAACACCGACAGGTGT
CGGTTCGGGCTCTCTCCTCTAATATCTCCCCCCAAAGTTCCCCCAATTCA
AATTGGGGGAAAGAACCTCATCCTTAACAAATAAAGTTGCTGCGGTGTCT
CAACTAACTTTCGGTGCCCTCTCTCTCGTTGTCGTGTTGCGTTCGCTTTC
GTCACGTGTCCTGAAGATGGGCTCCGACGCCCTCTTTGGCATCGGCGCGA
GGGCGGAGGCGCCGCCTTCGGACCAGGCACACGTGCAGCTGAGGCCCGGT
GCTGCGCCATCTTCGTACCAACCACACGTGCAGCAGAAGCCCGGTACTGC
GCCCGCATGTTCACCGCCCCCCCACAAGGTGAGGGTCTTGGAGTGAGGGG
CAGGCCGACTCTCATCACTTGCTGTGCGACGCCTTAACAAATAAACGTGC
TGCGGTATCTCAACTAGTTTTCCGTGCCTCTCTCGTTGTCATTTTGTGTT
CGCCCTCGTCACGTCTCGCCTGGAGATGGGTTCCGACGCCCTTTGTGCCC
CCCCAAAAGCGACCAACCAGCTAGTCTGCAGCCAAAAGAAGGATGCCAAG
CAGAACAAGGCGGGCTCCGACGCCCTCTTCGGGCCCCTTAAAGCGGCTGC
TCAGCGCCTCGGCGGTCAAAAAAAGGATGCTAAGCAGACGATGAAAAACT
TCAAGGACAGCAACCCAGTCTGCCTCCTCTCGAGGGCCGTTTACCATAGG
GCCCGTGGAGACCGCAAAACAGCCGGAAATCTCTGCCGACGGAGTGCCGT
GAACACCGTTTCGATTTTCGGGGGCGTGGTGAACGCCATTCCAGGGATCG
GGCACGTAAAAGGACTCGCCCACTTCGCTTGCCGAGACAAGAAGGGTGGA
CGCAAAGCAATGGAAAGCGCCACCAGATCCACGGCAGGTTTCTGTGGAGC
CGTGGTCGGTGGTGTCACTGGGGGTCCCCCGGGTGCCGTTCTGGGATACG
TGGCTGGAACCAATGCTACTGACGCCGCAGTTTCGGGTAATGTAACGAAG
TGCTGGGACTCGATTGCCTTTTTTTCGTACCACTTCAAAGTATGTACATA
GGATGCCACTCACTTGAAGCTTGCACGAGCGAGAAAAAACTTAGTATTTG
GCAACAAACTTCCGATGCCGAGTCTACAGCGAAACGAGTGTTGATAAGCA
TCCAGATATGTCTCTCAGGAAACCCGTTCCCGTTTCCCTGCGGAACGATA
CATAGCGCACGATCCTCCTGAGGACCGAAGTGTGCGACTACAGCAGTAGC
TCTAAAGCCGGCCTCAAGAAACAAATACTCCCATTGATTACCACCCCCAC
CTGACGCCCGAAATGAACCCCTCCGTACTCCAATCAATTGGCACTGAGAG
TCAACTACTACATAGTTATGCCACAAACTGGGGGGGTGGGTAGCGATGCT
GATTCAAACTCCCCCTGTCGTAGGACGGCAACGCCTACTTACAGAAACGG
GAATTGTTCCGAACAAAACAGCACAGACAAGGGGGAGTCAACCTTGGTTT
TTGCGTGCCCCCTTCCTTACCAAAATACGTGTTTGCCCCCTCTGACTGTG
CTTATGTTGCACGTGGCAGTTGCCGACAGCGCGATTCACAGGGAGTTGAG
GCTGCACGGGAACTTGGACAAGATCAAGACGGTCGCTCAAAAACCAAGCA
TC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2159:13658..16359-

>mRNA_L-elsbetiae_contig2159.6609.1 ID=mRNA_L-elsbetiae_contig2159.6609.1|Name=mRNA_L-elsbetiae_contig2159.6609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2082bp|location=Sequence derived from alignment at L-elsbetiae_contig2159:13658..16359- (Laminarionema elsbetiae ELsaHSoW15)
GCGCCATCTTCGTACCAGGCACAAGTGCAGCAGAGGCCCGGTGCTGCGCC
ATCTTCGTACCAGCCACACGTGCAGCAGAGGCCGAGTGCTGCGCCATCTT
CGTACCAGGCACAAGTGCAGCAGAGGGTGGATGCTGCGCCATCTTCGTAC
CAGCCACACGTGCAGCAGAGGGTGGATGCTGCGCCATCTTCGTACCAGCC
ACCCGGTGCTGCGCCATCTTCGTACCAGTCACATGTGCAGCAGAGACCCG
GTGCTGCGCCCGCGTCTTCACCCCCCCCCCACAAGGCGCCATCTTCGTAC
CAGGCACAAGTGCAGCAGAGGCCCGGTGCTGCGCCATCTTCGTACCAGCC
ACACGTGCAGCAGAGGCCGAGTGCTGCGCCATCTTCGTACCAGGCACAAG
TGCAGCAGAGGGTGGATGCTGCGCCATCTTCGTACCAGCCACACGTGCAG
CAGAGGGTGGATGCTGCGCCATCTTCGTACCAGCCACCCGGTGCTGCGCC
ATCTTCGTACCAGTCACATGTGCAGCAGAGACCCGGTGCTGCGCCCGCGT
CTTCACCCCCCCCCCACAAGATGGGCTCCGACGCCCTCTTTGGCATCGGC
GCGAGGGCGGAGGCGCCGCCTTCGGACCAGGCACACGTGCAGCTGAGGCC
CGGTGCTGCGCCATCTTCGTACCAACCACACGTGCAGCAGAAGCCCGGTA
CTGCGCCCGCATGTTCACCGCCCCCCCACAAGATGGGCTCCGACGCCCTC
TTTGGCATCGGCGCGAGGGCGGAGGCGCCGCCTTCGGACCAGGCACACGT
GCAGCTGAGGCCCGGTGCTGCGCCATCTTCGTACCAACCACACGTGCAGC
AGAAGCCCGGTACTGCGCCCGCATGTTCACCGCCCCCCCACAAGATGGGT
TCCGACGCCCTTTGTGCCCCCCCAAAAGCGACCAACCAGCTAGTCTGCAG
CCAAAAGAAGGATGCCAAGCAGAACAAGGCGGGCTCCGACGCCCTCTTCG
GGCCCCTTAAAGCGGCTGCTCAGCGCCTCGGCGGTCAAAAAAAGGATGCT
AAGCAGACGATGAAAAACTTCAAGGACAGCAACCCAGTCTGCCTCCTCTC
GAGGGCCGTTTACCATAGGGCCCGTGGAGACCGCAAAACAGCCGGAAATC
TCTGCCGACGGAGTGCCGTGAACACCGTTTCGATTTTCGGGGGCGTGGTG
AACGCCATTCCAGGGATCGGGCACGTAAAAGGACTCGCCCACTTCGCTTG
CCGAGACAAGAAGGGTGGACGCAAAGCAATGGAAAGCGCCACCAGATCCA
CGGCAGGTTTCTGTGGAGCCGTGGTCGGTGGTGTCACTGGGGGTCCCCCG
GGTGCCGTTCTGGGATACGTGGCTGGAACCAATGCTACTGACGCCGCAGT
TTCGGATGGGTTCCGACGCCCTTTGTGCCCCCCCAAAAGCGACCAACCAG
CTAGTCTGCAGCCAAAAGAAGGATGCCAAGCAGAACAAGGCGGGCTCCGA
CGCCCTCTTCGGGCCCCTTAAAGCGGCTGCTCAGCGCCTCGGCGGTCAAA
AAAAGGATGCTAAGCAGACGATGAAAAACTTCAAGGACAGCAACCCAGTC
TGCCTCCTCTCGAGGGCCGTTTACCATAGGGCCCGTGGAGACCGCAAAAC
AGCCGGAAATCTCTGCCGACGGAGTGCCGTGAACACCGTTTCGATTTTCG
GGGGCGTGGTGAACGCCATTCCAGGGATCGGGCACGTAAAAGGACTCGCC
CACTTCGCTTGCCGAGACAAGAAGGGTGGACGCAAAGCAATGGAAAGCGC
CACCAGATCCACGGCAGGTTTCTGTGGAGCCGTGGTCGGTGGTGTCACTG
GGGGTCCCCCGGGTGCCGTTCTGGGATACGTGGCTGGAACCAATGCTACT
GACGCCGCAGTTTCGGTTGCCGACAGCGCGATTCACAGGGAGTTGAGGCT
GCACGGGAACTTGGACAAGATCAAGACGGTCGCTCAAAAACCAAGCATCT
TGCCGACAGCGCGATTCACAGGGAGTTGAGGCTGCACGGGAACTTGGACA
AGATCAAGACGGTCGCTCAAAAACCAAGCATC
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