mRNA_L-elsbetiae_contig2159.6607.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2159.6607.1
Unique NamemRNA_L-elsbetiae_contig2159.6607.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2159.6607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2159contigL-elsbetiae_contig2159:6155..7001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.1229854-CDS-L-elsbetiae_contig2159:6154..62641622815881.1229854-CDS-L-elsbetiae_contig2159:6154..6264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 6155..6264 +
1691683165.410035-CDS-L-elsbetiae_contig2159:6154..62641691683165.410035-CDS-L-elsbetiae_contig2159:6154..6264Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 6155..6264 +
1622815881.1374025-CDS-L-elsbetiae_contig2159:6842..69991622815881.1374025-CDS-L-elsbetiae_contig2159:6842..6999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 6843..6999 +
1691683165.4249735-CDS-L-elsbetiae_contig2159:6842..69991691683165.4249735-CDS-L-elsbetiae_contig2159:6842..6999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2159 6843..6999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2159.6607.1prot_L-elsbetiae_contig2159.6607.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2159 6155..6999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2159.6607.1

>prot_L-elsbetiae_contig2159.6607.1 ID=prot_L-elsbetiae_contig2159.6607.1|Name=mRNA_L-elsbetiae_contig2159.6607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
PPGLAEERGAASRGEADSSLPTRGFTARHMAGTVRRCTKAARELRGIECT
WSPRWVEKIIFGATRGRKVAGLQGGKNLITIPSGWASEQ
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mRNA from alignment at L-elsbetiae_contig2159:6155..7001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2159.6607.1 ID=mRNA_L-elsbetiae_contig2159.6607.1|Name=mRNA_L-elsbetiae_contig2159.6607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=847bp|location=Sequence derived from alignment at L-elsbetiae_contig2159:6155..7001+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCCGGGCCTTGCGGAAGAAAGGGGAGCTGCTTCAAGAGGAGAAGCTGA
TTCTTCTTTGCCGACAAGAGGCTTTACCGCTCGGCACATGGCAGGGACCG
TCCGTCGTTGGTGAGCCAATTTGTATAACGTTCACAGAGAGAGAAAGCAC
CCACGCAAGATGTCTTCGTGAGCGCATGGTTTTTGCGTTGAACGCCTGGG
TATGGTGAGCAGCACGGAGAGCAGGTGGGGAGGTGAACGGAACCTGCCTT
ACCGGCAATTGCCGCCGGGGTTTTTGAAGCATACAGTGATAAGAGACGGA
GGGTGCAGATGGGGAGGGCCCTTGGACACCATCTTCCATGCGAAGCCGTT
TGCTACTTTGGCCCTACGGCGTGTCCCGTTTGTGGGGTTCGCCGCTGCTT
ACCTATGTAGAGAGCGCCGCCTTCTCTTTCAAAGAAAGAACCGCAGCAGG
GGTAGTCTACCTTGTTAGTGGCATCTCTTGGTAGGGAGCAAGCCCTGCTT
TGTAGCTACTAGTAGCTACATAGTGGCATTCAACACGGCCCCAACGAAAC
GAATGTATCCGACTTGCTGCTGGTTTTGGATGTTCAGGCGGCAGACACTC
GTGTATTAGTGTGTTTAACAGATAAACTGAGATGAAATACTCGTTGTTGC
TTCGTTGAATCTGGGTGGACGATTTTTGTCTTTGAAAGCACCAAAGCTGC
CCGGGAATTACGGGGCATCGAGTGCACCTGGAGCCCGCGGTGGGTTGAAA
AGATAATCTTCGGAGCAACCAGAGGACGAAAAGTCGCGGGACTCCAAGGA
GGCAAGAACCTCATCACGATCCCGAGCGGCTGGGCAAGCGAACAATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2159:6155..7001+

>mRNA_L-elsbetiae_contig2159.6607.1 ID=mRNA_L-elsbetiae_contig2159.6607.1|Name=mRNA_L-elsbetiae_contig2159.6607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig2159:6155..7001+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCCGGGCCTTGCGGAAGAAAGGGGAGCTGCTTCAAGAGGAGAAGCTGA
TTCTTCTTTGCCGACAAGAGGCTTTACCGCTCGGCACATGGCAGGGACCG
TCCGTCGTTGCCTCCGGGCCTTGCGGAAGAAAGGGGAGCTGCTTCAAGAG
GAGAAGCTGATTCTTCTTTGCCGACAAGAGGCTTTACCGCTCGGCACATG
GCAGGGACCGTCCGTCGTTGCACCAAAGCTGCCCGGGAATTACGGGGCAT
CGAGTGCACCTGGAGCCCGCGGTGGGTTGAAAAGATAATCTTCGGAGCAA
CCAGAGGACGAAAAGTCGCGGGACTCCAAGGAGGCAAGAACCTCATCACG
ATCCCGAGCGGCTGGGCAAGCGAACAACACCAAAGCTGCCCGGGAATTAC
GGGGCATCGAGTGCACCTGGAGCCCGCGGTGGGTTGAAAAGATAATCTTC
GGAGCAACCAGAGGACGAAAAGTCGCGGGACTCCAAGGAGGCAAGAACCT
CATCACGATCCCGAGCGGCTGGGCAAGCGAACAA
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