mRNA_L-elsbetiae_contig21589.6606.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21589.6606.1
Unique NamemRNA_L-elsbetiae_contig21589.6606.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21589.6606.1 vs. uniprot
Match: D7FTE2_ECTSI (L-type lectin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE2_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.320e-32
Identity = 59/76 (77.63%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 GPFFGIEESFTGLAIVVNTNRQLLSRNK-PGEPTGRHRDVAVVANNGTRKYEDLIGSLDGCTANVRFDETRDDFNV 225
            G FFGI+E FTGL +V NTNRQLL+R+K PGEP GRHRDV+V+ANNGTR Y +LI SL+GCTANVRFDETRDDFNV
Sbjct:  137 GRFFGIDEKFTGLVVVANTNRQLLNRDKLPGEPMGRHRDVSVIANNGTRNYGNLIDSLEGCTANVRFDETRDDFNV 212
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BLAST of mRNA_L-elsbetiae_contig21589.6606.1 vs. uniprot
Match: A0A835ZHK2_9STRA (L-type lectin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHK2_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 9.870e-8
Identity = 26/71 (36.62%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:   13 GIEESFTGLAIVVNTNRQLLSRNKPGEPTGRHRDVAVVANNGTRKYEDLIGSLDGCTANVRFDETRDDFNV 225
            G  E F G+ ++V+T R+            +HRD+++V NNG +    ++  L GC AN+R+ E RDDF V
Sbjct:    1 GCAEKFMGVGVIVDTYRRA--------EDAKHRDISMVTNNGRKGGAQVMTELQGCNANLRYWEGRDDFTV 63
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BLAST of mRNA_L-elsbetiae_contig21589.6606.1 vs. uniprot
Match: A0A7R9U5N4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U5N4_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.320e-6
Identity = 28/75 (37.33%), Postives = 40/75 (53.33%), Query Frame = 1 
Query:    1 GPFFGIEESFTGLAIVVNTNRQLLSRNKPGEPTGRHRDVAVVANNGTRKYEDLIGSLDGCTANVRFDETRDDFNV 225
            G   G+   F G+ IV +T R         E   +HRDVA++ N+GT+  +D+   + GC A VR  E R DF+V
Sbjct:  117 GDLHGVNPKFVGVGIVFDTFRNT-------EALDKHRDVALLVNDGTKTVDDMYEVVQGCDAAVRVWEQRADFDV 184
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21589.6606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FTE2_ECTSI1.320e-3277.63L-type lectin-like domain-containing protein n=2 T... [more]
A0A835ZHK2_9STRA9.870e-836.62L-type lectin-like domain-containing protein n=1 T... [more]
A0A7R9U5N4_9STRA2.320e-637.33Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21589contigL-elsbetiae_contig21589:119..343 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.6
Seed ortholog evalue1e-26
Seed eggNOG ortholog2880.D7FTE2
KEGG koko:K10080,ko:K10082
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030134,GO:0030135,GO:0030246,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791
EggNOG free text desc.carbohydrate binding
EggNOG OGsKOG3839@1,KOG3839@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091,ko04131
Ec32 ortholog descriptionLectin domain
Ec32 orthologEc-21_001000.1
Exons1
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815881.0937123-CDS-L-elsbetiae_contig21589:118..3431622815881.0937123-CDS-L-elsbetiae_contig21589:118..343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21589 119..343 -
1691683165.3915997-CDS-L-elsbetiae_contig21589:118..3431691683165.3915997-CDS-L-elsbetiae_contig21589:118..343Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21589 119..343 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21589.6606.1prot_L-elsbetiae_contig21589.6606.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21589 119..343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21589.6606.1

>prot_L-elsbetiae_contig21589.6606.1 ID=prot_L-elsbetiae_contig21589.6606.1|Name=mRNA_L-elsbetiae_contig21589.6606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
GPFFGIEESFTGLAIVVNTNRQLLSRNKPGEPTGRHRDVAVVANNGTRKY
EDLIGSLDGCTANVRFDETRDDFNV
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mRNA from alignment at L-elsbetiae_contig21589:119..343-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21589.6606.1 ID=mRNA_L-elsbetiae_contig21589.6606.1|Name=mRNA_L-elsbetiae_contig21589.6606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=225bp|location=Sequence derived from alignment at L-elsbetiae_contig21589:119..343- (Laminarionema elsbetiae ELsaHSoW15)
GGTCCCTTCTTCGGGATCGAGGAGAGCTTCACGGGGCTGGCGATCGTCGT
CAACACCAACCGCCAGCTGCTCAGCAGGAACAAGCCCGGGGAGCCCACGG
GACGACACAGGGACGTGGCCGTCGTGGCCAACAACGGCACCAGGAAGTAC
GAAGACCTCATCGGCTCGCTGGATGGGTGCACCGCCAACGTGAGGTTCGA
CGAGACGAGGGACGACTTCAACGTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21589:119..343-

>mRNA_L-elsbetiae_contig21589.6606.1 ID=mRNA_L-elsbetiae_contig21589.6606.1|Name=mRNA_L-elsbetiae_contig21589.6606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig21589:119..343- (Laminarionema elsbetiae ELsaHSoW15)
GGTCCCTTCTTCGGGATCGAGGAGAGCTTCACGGGGCTGGCGATCGTCGT
CAACACCAACCGCCAGCTGCTCAGCAGGAACAAGCCCGGGGAGCCCACGG
GACGACACAGGGACGTGGCCGTCGTGGCCAACAACGGCACCAGGAAGTAC
GAAGACCTCATCGGCTCGCTGGATGGGTGCACCGCCAACGTGAGGTTCGA
CGAGACGAGGGACGACTTCAACGTCGGTCCCTTCTTCGGGATCGAGGAGA
GCTTCACGGGGCTGGCGATCGTCGTCAACACCAACCGCCAGCTGCTCAGC
AGGAACAAGCCCGGGGAGCCCACGGGACGACACAGGGACGTGGCCGTCGT
GGCCAACAACGGCACCAGGAAGTACGAAGACCTCATCGGCTCGCTGGATG
GGTGCACCGCCAACGTGAGGTTCGACGAGACGAGGGACGACTTCAACGTC
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