mRNA_L-elsbetiae_contig2155.6595.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2155.6595.1
Unique NamemRNA_L-elsbetiae_contig2155.6595.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2155.6595.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.090e-10
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 MINVISKRCDYQGCSKHPSYGVAGSKKAEFCVAHALEGMV 120
            M++V+SKRC + GC+K PSYG  GSKKAE C  HAL+GMV
Sbjct:    1 MVDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_L-elsbetiae_contig2155.6595.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 8.230e-9
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 MINVISKRCDYQGCSKHPSYGVAGSKKAEFCVAHALEGMV 120
            M NV+ KRC + GC+K PS+G AGSK+AEFC  HA + MV
Sbjct:    1 MFNVVDKRCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDMV 40
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BLAST of mRNA_L-elsbetiae_contig2155.6595.1 vs. uniprot
Match: A0A6H5LBM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBM3_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.320e-7
Identity = 21/34 (61.76%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:   19 KRCDYQGCSKHPSYGVAGSKKAEFCVAHALEGMV 120
            +RC ++ C KHP+YGV G++KAEFC  HAL+GMV
Sbjct:   15 RRCAHEDCVKHPTYGVPGTRKAEFCAPHALDGMV 48
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BLAST of mRNA_L-elsbetiae_contig2155.6595.1 vs. uniprot
Match: D8LD34_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD34_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 5.280e-6
Identity = 21/35 (60.00%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    1 MINVISKRCDYQGCSKHPSYGVAGSKKAEFCVAHA 105
            M+NV++K C + GC+K PSYG +G+KKAEFC  HA
Sbjct:    1 MVNVVTKPCGHPGCTKKPSYGKSGTKKAEFCSQHA 35
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BLAST of mRNA_L-elsbetiae_contig2155.6595.1 vs. uniprot
Match: A0A1Y2H7L7_9FUNG (Uncharacterized protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2H7L7_9FUNG)

HSP 1 Score: 50.8 bits (120), Expect = 6.510e-5
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1 
Query:    1 MINVISKRCDYQGCSKHPSYGVAGSKKAEFCVAH 102
            M+NVISKRC + GC+K P++   GS KA FC  H
Sbjct:    1 MVNVISKRCQFDGCTKRPAFNTKGSTKARFCAQH 34
[Close]
BLAST of mRNA_L-elsbetiae_contig2155.6595.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 6.710e-5
Identity = 20/33 (60.61%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   22 RCDYQGCSKHPSYGVAGSKKAEFCVAHALEGMV 120
            +C ++ C+K P+YGVAGSKK EFC  HA +GMV
Sbjct:   63 QCGHENCTKRPTYGVAGSKKREFCSQHARDGMV 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2155.6595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI4.090e-1065.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JW94_9PHAE8.230e-960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBM3_9PHAE1.320e-761.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD34_ECTSI5.280e-660.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A1Y2H7L7_9FUNG6.510e-555.88Uncharacterized protein n=1 Tax=Catenaria anguillu... [more]
A0A6H5JT00_9PHAE6.710e-560.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2155contigL-elsbetiae_contig2155:19330..19683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size354
Cds size354
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815880.0412986-CDS-L-elsbetiae_contig2155:19329..196831622815880.0412986-CDS-L-elsbetiae_contig2155:19329..19683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2155 19330..19683 +
1691683164.6512337-CDS-L-elsbetiae_contig2155:19329..196831691683164.6512337-CDS-L-elsbetiae_contig2155:19329..19683Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2155 19330..19683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2155.6595.1prot_L-elsbetiae_contig2155.6595.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2155 19330..19683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2155.6595.1

>prot_L-elsbetiae_contig2155.6595.1 ID=prot_L-elsbetiae_contig2155.6595.1|Name=mRNA_L-elsbetiae_contig2155.6595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MINVISKRCDYQGCSKHPSYGVAGSKKAEFCVAHALEGMVDVCSKRCGHP
GCIKRSSYGTPGSKKPQFCIHHAMKGMIDVVSKRCAEGGCNKWPSYGVPG
SKKAEFCAAHAKDGMVGV
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mRNA from alignment at L-elsbetiae_contig2155:19330..19683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2155.6595.1 ID=mRNA_L-elsbetiae_contig2155.6595.1|Name=mRNA_L-elsbetiae_contig2155.6595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig2155:19330..19683+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTAACGTCATCAGCAAGAGGTGCGACTACCAAGGGTGCTCTAAGCA
TCCCTCCTACGGCGTAGCAGGCAGCAAGAAGGCGGAGTTCTGCGTGGCTC
ACGCGCTCGAAGGGATGGTGGATGTGTGCAGTAAAAGGTGTGGCCACCCG
GGCTGCATCAAGCGATCCTCCTACGGCACTCCCGGGAGCAAAAAGCCACA
GTTCTGCATCCACCACGCCATGAAGGGCATGATCGACGTTGTCAGCAAGA
GATGTGCGGAAGGGGGCTGCAATAAGTGGCCGTCGTACGGCGTTCCGGGT
AGCAAAAAGGCCGAGTTCTGCGCAGCGCACGCGAAGGACGGAATGGTGGG
CGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2155:19330..19683+

>mRNA_L-elsbetiae_contig2155.6595.1 ID=mRNA_L-elsbetiae_contig2155.6595.1|Name=mRNA_L-elsbetiae_contig2155.6595.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig2155:19330..19683+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTAACGTCATCAGCAAGAGGTGCGACTACCAAGGGTGCTCTAAGCA
TCCCTCCTACGGCGTAGCAGGCAGCAAGAAGGCGGAGTTCTGCGTGGCTC
ACGCGCTCGAAGGGATGGTGGATGTGTGCAGTAAAAGGTGTGGCCACCCG
GGCTGCATCAAGCGATCCTCCTACGGCACTCCCGGGAGCAAAAAGCCACA
GTTCTGCATCCACCACGCCATGAAGGGCATGATCGACGTTGTCAGCAAGA
GATGTGCGGAAGGGGGCTGCAATAAGTGGCCGTCGTACGGCGTTCCGGGT
AGCAAAAAGGCCGAGTTCTGCGCAGCGCACGCGAAGGACGGAATGGTGGG
CGTTATGATTAACGTCATCAGCAAGAGGTGCGACTACCAAGGGTGCTCTA
AGCATCCCTCCTACGGCGTAGCAGGCAGCAAGAAGGCGGAGTTCTGCGTG
GCTCACGCGCTCGAAGGGATGGTGGATGTGTGCAGTAAAAGGTGTGGCCA
CCCGGGCTGCATCAAGCGATCCTCCTACGGCACTCCCGGGAGCAAAAAGC
CACAGTTCTGCATCCACCACGCCATGAAGGGCATGATCGACGTTGTCAGC
AAGAGATGTGCGGAAGGGGGCTGCAATAAGTGGCCGTCGTACGGCGTTCC
GGGTAGCAAAAAGGCCGAGTTCTGCGCAGCGCACGCGAAGGACGGAATGG
TGGGCGTT
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