mRNA_L-elsbetiae_contig2154.6592.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2154.6592.1
Unique NamemRNA_L-elsbetiae_contig2154.6592.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: A0A6H5JJW2_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW2_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 1.540e-105
Identity = 167/195 (85.64%), Postives = 175/195 (89.74%), Query Frame = 1
Query:    1 FEPRLEQQRPPKTNQDAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSPGNWKGKKGKHLRRVLAEAHDAAIILINPTDPDKFL--RPADYNAFESVYHLSPMRVNYLQPLPSPQ 579
            FE RLE+QRPPKTNQDAADAAGAGVVAALMEGRRRLIVEVDD+QLRYNSPDFCHEAMAEFVELL LPLTTALENLKARQNRCK+VIQG  HA+QVKEAMVLDAP SLQVVSL +  VAK DRVVALV+P NW GKKG+HL+RVLAEAHDAAIILINP D DKFL  RPADYN FE VYHLSPMRVNYL  LP PQ
Sbjct:  184 FEARLEKQRPPKTNQDAADAAGAGVVAALMEGRRRLIVEVDDSQLRYNSPDFCHEAMAEFVELLVLPLTTALENLKARQNRCKIVIQGAHHASQVKEAMVLDAPASLQVVSLSDAKVAKKDRVVALVAPENWTGKKGRHLKRVLAEAHDAAIILINPIDADKFLQARPADYNTFELVYHLSPMRVNYLHSLPPPQ 378          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: D7FVX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX0_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 5.770e-70
Identity = 126/165 (76.36%), Postives = 133/165 (80.61%), Query Frame = 1
Query:    1 FEPRLEQQRPPKTNQDAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSPGNWKGKKGKHLRRVLAEAHDAAIILINPTDPDKFLR 495
            FE RLE+QRPPKTNQDAADAAGAGVVAALMEGRRRLIVEVDD+QLRYNSPDFCHEAMAEFVELL LPLTTALENLKA                     MVLDAP SLQVVSL +  VAK DRVVALV+P NW GKKG+HL+RVLAEAHDAAIILINP D DKFL+
Sbjct:  294 FEARLEKQRPPKTNQDAADAAGAGVVAALMEGRRRLIVEVDDSQLRYNSPDFCHEAMAEFVELLVLPLTTALENLKA---------------------MVLDAPASLQVVSLSDAKVAKKDRVVALVAPENWTGKKGRHLKRVLAEAHDAAIILINPIDADKFLQ 437          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: A0A1E7FKF5_9STRA (DUF1995 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKF5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.070e-16
Identity = 54/175 (30.86%), Postives = 94/175 (53.71%), Query Frame = 1
Query:   46 DAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSPGNWKGKKGKHLRRVLAEAHDAAIILINPTDPDKF----LRPADYNAFESVYHLSPMRVNYL 558
            DAADAAGA ++AA++ G++R++++V DA+L  +      E + +F+EL  LP+   LE LK+ +NR K+V        + +  M L AP+ + + +L    V K D++V +V+P     +  + ++ +L  + D    +  P     +       AD   FE+VYHL  + V Y+
Sbjct:  160 DAADAAGAAILAAMLGGKQRMLIDVRDAELSSDP-----ETLVQFIELAILPIAAGLEGLKSTRNRVKIVFPKVSQLLEYRRTMALAAPEVVALSTLGFDPVEKRDKLVVIVAPEPDDEEGIQAIKELLTPSEDGVHPIQKPVVILNYHMLPFTGADLE-FETVYHLRLLAVQYM 328          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: A0A7S4APJ7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4APJ7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.240e-14
Identity = 54/175 (30.86%), Postives = 91/175 (52.00%), Query Frame = 1
Query:   46 DAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSPGNWKGKKGKHLRRVLAEAHDAAIILINPTDPDKF----LRPADYNAFESVYHLSPMRVNYL 558
            DAAD AGA ++AA++ G++R++V+V DA+L  N P    E + +F+EL  LP+   LE LK+ +NR K+V        + +  M L AP+ + + +L    V K D++V +V+P     +  + +R +L    + A  +  P     +        D   F + YHL  + V Y+
Sbjct:  304 DAADGAGAAILAAMLGGKQRMLVDVRDAELS-NDP----EVLVQFIELAILPIAAGLEGLKSTRNRVKIVFPKVSQLLEYRRTMALAAPEVVALSTLGFDPVEKRDKLVVIVAPQPDDEEGIQAIRNLLTPLEEGAQPIQQPVVILNYHMLPFSGVDIE-FVTAYHLRLLAVQYM 472          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: A0A7S1BZ77_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZ77_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.670e-14
Identity = 57/188 (30.32%), Postives = 92/188 (48.94%), Query Frame = 1
Query:   46 DAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKAR-QNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSPGNWKGKKGKHLRRVLAEAHDAAIILINPTDPDKFLRP----------------ADYNAFESVYHLSPMRVNYL 558
            DAAD+AG+ ++AA++ G RR++V+V DA L  + P      +A+F+EL  LP+   LE L A  +NR K+V          +  M L APD + + +L+     + D +V  V+P     +  + L++           L+ P+DP   L+P                AD + +E VYHL  + V Y+
Sbjct:  280 DAADSAGSSILAAMLGGHRRMLVDVRDADLS-SDPSL----LAQFIELSILPVAAGLEGLTAASRNRVKIVFSSVSCLLDYRREMALSAPDVVTLSTLDFAVAEEGDAIVVFVAPAPDDMEATEKLQK-----------LLEPSDPKDKLQPIVVLLNHHMIPIEVNGADLSVYEPVYHLRLLSVQYI 451          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: A0A448Z529_9STRA (DUF1995 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z529_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.880e-14
Identity = 43/114 (37.72%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   46 DAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSP 387
            DAAD AGA ++AA++ G++R++V+V DA+L  N P    E + +F+EL  LP+   LE LK+ +NR K+V        + +  M L AP+ + + +L    V K D++V +V+P
Sbjct:  171 DAADGAGAAILAAMLGGKQRMLVDVRDAELS-NDP----EILVQFIELAILPIAAGLEGLKSTRNRVKIVFPKVSQLLEYRRTMALAAPEVVALSTLGFDPVEKRDKLVVIVAP 279          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: A0A7S3P4L7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P4L7_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.540e-14
Identity = 42/113 (37.17%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   49 AADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSP 387
            AADAAGA V+A L+ G+RRL+V+V DA+L  + P    E + +F+EL  LP+   LE LK+++NR K+V        + ++ M L AP+ + + +++   +   D +V L++P
Sbjct:    1 AADAAGAAVLAGLLAGQRRLLVDVRDAEL--SKP----EQLVQFLELTILPVAAGLEGLKSKRNRLKLVFPKVSQLLEYRKTMALAAPEVVALSTMDFDPIESHDNLVVLLAP 107          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: A0A7R9WGC7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGC7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.270e-12
Identity = 41/108 (37.96%), Postives = 65/108 (60.19%), Query Frame = 1
Query:   46 DAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRV 369
            DAAD+AGA ++AA++ G++R++V+V DA+L    PD     + +F+EL  LP+   LE LK+ +NR K+V        Q +  M L AP+ + + +L    VAK D +
Sbjct:  233 DAADSAGASILAAMLAGKQRMLVDVRDAELT-RDPDI----LVQFIELAILPVAAGLEGLKSERNRVKIVFPTVSQLLQYRRTMALAAPEVVALSTLGFDPVAKQDNL 335          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: B7G626_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G626_PHATC)

HSP 1 Score: 74.3 bits (181), Expect = 4.040e-12
Identity = 53/185 (28.65%), Postives = 90/185 (48.65%), Query Frame = 1
Query:   46 DAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSPGNWKGKKGKHLRRVLAEAHDAAIILINPTDPDKF------------LRPADYNA--FESVYHLSPMRVNYL 558
            +AADAAG+ ++A ++ G++R++V+V DA+L  +      E + +F+EL  LP+   LE LK+++NR K+V          ++ M L AP+ + + +     V K D +V +V+P                E   A   L++PTDP++             + P       FE  YHL  + V Y+
Sbjct:  228 EAADAAGSAILAMMLGGKQRMLVDVRDAELSRDP-----ETLVQFIELAILPVAAGLEGLKSQRNRLKIVFPTVSQLLVYRKTMALAAPEVVALSTFGLEPVEKQDNLVVIVAPSPDD-----------EEGLMAMNELLHPTDPNRISIKQPVVILNHHMVPISGPVADFEVAYHLRLLSVQYM 396          
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Match: A0A1Z5JP22_FISSO (DUF1995 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JP22_FISSO)

HSP 1 Score: 71.2 bits (173), Expect = 4.450e-11
Identity = 38/114 (33.33%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   46 DAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSPDFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMVLDAPDSLQVVSLEEGHVAKTDRVVALVSP 387
            +AADAAGA ++A L+ G++R+IV+V DA L  +        + +F+EL  LP+   LE LK+++NR K+V          ++ M L AP+ + + +L    V   D ++ +++P
Sbjct:  179 EAADAAGASILAGLLGGKQRMIVDVRDADLANDV-----NTLVQFLELAVLPVAAGLEGLKSKRNRLKLVFPTVGQLLHYRKTMALAAPEVVALSTLGLDPVEDRDNLIVIIAP 287          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2154.6592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JJW2_9PHAE1.540e-10585.64DUF1995 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FVX0_ECTSI5.770e-7076.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1E7FKF5_9STRA2.070e-1630.86DUF1995 domain-containing protein n=1 Tax=Fragilar... [more]
A0A7S4APJ7_9STRA1.240e-1430.86Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1BZ77_9STRA1.670e-1430.32Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A448Z529_9STRA2.880e-1437.72DUF1995 domain-containing protein n=1 Tax=Pseudo-n... [more]
A0A7S3P4L7_9STRA3.540e-1437.17Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7R9WGC7_9STRA1.270e-1237.96Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
B7G626_PHATC4.040e-1228.65Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5JP22_FISSO4.450e-1133.33DUF1995 domain-containing protein n=2 Tax=Fistulif... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2154contigL-elsbetiae_contig2154:2465..4921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score236.5
Seed ortholog evalue1e-59
Seed eggNOG ortholog2880.D7FVX0
Hectar predicted targeting categoryother localisation
EggNOG OGs2CBGF@1,2SCME@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size580
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2154.6592.1prot_L-elsbetiae_contig2154.6592.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2154 2465..4921 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815879.8366406-CDS-L-elsbetiae_contig2154:2464..25481622815879.8366406-CDS-L-elsbetiae_contig2154:2464..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 2465..2548 -
1691683164.5207596-CDS-L-elsbetiae_contig2154:2464..25481691683164.5207596-CDS-L-elsbetiae_contig2154:2464..2548Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 2465..2548 -
1622815879.8498988-CDS-L-elsbetiae_contig2154:2762..28851622815879.8498988-CDS-L-elsbetiae_contig2154:2762..2885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 2763..2885 -
1691683164.5345721-CDS-L-elsbetiae_contig2154:2762..28851691683164.5345721-CDS-L-elsbetiae_contig2154:2762..2885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 2763..2885 -
1622815879.8598208-CDS-L-elsbetiae_contig2154:3129..32101622815879.8598208-CDS-L-elsbetiae_contig2154:3129..3210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 3130..3210 -
1691683164.5440497-CDS-L-elsbetiae_contig2154:3129..32101691683164.5440497-CDS-L-elsbetiae_contig2154:3129..3210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 3130..3210 -
1622815879.87018-CDS-L-elsbetiae_contig2154:3516..35791622815879.87018-CDS-L-elsbetiae_contig2154:3516..3579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 3517..3579 -
1691683164.5531344-CDS-L-elsbetiae_contig2154:3516..35791691683164.5531344-CDS-L-elsbetiae_contig2154:3516..3579Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 3517..3579 -
1622815879.8803704-CDS-L-elsbetiae_contig2154:4141..42761622815879.8803704-CDS-L-elsbetiae_contig2154:4141..4276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 4142..4276 -
1691683164.564623-CDS-L-elsbetiae_contig2154:4141..42761691683164.564623-CDS-L-elsbetiae_contig2154:4141..4276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 4142..4276 -
1622815879.8897061-CDS-L-elsbetiae_contig2154:4828..49211622815879.8897061-CDS-L-elsbetiae_contig2154:4828..4921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 4829..4921 -
1691683164.5810676-CDS-L-elsbetiae_contig2154:4828..49211691683164.5810676-CDS-L-elsbetiae_contig2154:4828..4921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 4829..4921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2154.6592.1

>prot_L-elsbetiae_contig2154.6592.1 ID=prot_L-elsbetiae_contig2154.6592.1|Name=mRNA_L-elsbetiae_contig2154.6592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
FEPRLEQQRPPKTNQDAADAAGAGVVAALMEGRRRLIVEVDDAQLRYNSP
DFCHEAMAEFVELLTLPLTTALENLKARQNRCKVVIQGTRHAAQVKEAMV
LDAPDSLQVVSLEEGHVAKTDRVVALVSPGNWKGKKGKHLRRVLAEAHDA
AIILINPTDPDKFLRPADYNAFESVYHLSPMRVNYLQPLPSPQ
back to top

mRNA from alignment at L-elsbetiae_contig2154:2465..4921-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2154.6592.1 ID=mRNA_L-elsbetiae_contig2154.6592.1|Name=mRNA_L-elsbetiae_contig2154.6592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2457bp|location=Sequence derived from alignment at L-elsbetiae_contig2154:2465..4921- (Laminarionema elsbetiae ELsaHSoW15)
TTCGAGCCGAGGTTGGAGCAGCAGCGGCCGCCGAAGACGAATCAGGACGC GGCCGACGCGGCTGGTGCTGGCGTTGTGGCGGCCTTAATGGAGGTGAGGG AAACGCCACGCCCGGGTGACCTGACATGGCAGGGGGAAGAAGGTTATCTT CGTATTGTAGAGTGACGGGATGTGTCGCTCGCTGCCCTGTTGTGGATGCC GCCGCTTTCTATACTCTTTGCTTATATTGTGTGCGGCGAAGGGTAAGGGA TTTGTTTCGTTACTTTTCGGTGGGTTTTGAGGCGCGAAGTCTGCCACTTC TCTGTGGTGCTTGTGGCAGAGGGCGGGGGTGCAAACATAGCCATCTCTGT TTTGCGACTACCTGATACTGTTTTTGCCTCTGAAAAAAACCTGAAGATAT TGCAGGAGTATCAAAGTATGTTTCTCTGACCCGTCACAGATGTGTGTTCG GCACCTCACGCCACTCACTGCTGTCCCAGTCCGGGGGGCAAAGCCACTAC CCCGGTATTCGCGGTCGTCTGAATCGTCCGCCGACCATTTCTACTCGTAC GTGACTGATGGCGATGCCCCTAGCTTGCGTGTGAGGCTGATGCCGTATGG AATGATACCCCCCCCCCCCTCCCCCCGATCCGCTGTCCGTGCCAGGGGCG GAGAAGGCTCATCGTCGAGGTGGACGACGCTCAGCTCCGCTACAACTCCC CGGACTTCTGCCACGAAGCCATGGCGGAGTTCGTCGAGCTCCTAACCCTG CCGCTCACCACCGCCCTGGAGAACCTCAAGGCAAGCGAGCGGAGAGAAAT GACAAGACGGCCGTCGTTTTTTTTCGTTTTTTTCGATGTTGTTCTGTTTT GGTATTTTTGTTTTTTAAGTTCAACGCTCGCGAGATGCCCTTGGCAGGTA TTCACTTCTAGAATGACAAGCCCCCATGCGAACACCCTCGAAAACTCGCG CGGAGAAGTACCGTTGCGCCGTGGGGGTACCGTAGTTCGGCAGCTGGCCC GCGGCAGCGGCGAAAGGCAATCCTATCCTTTGCCGGGCGATCGATTCTGC AGAGGGGGGCGGGCGAGGGGGCGTGCATCGACTGGGCCATGCGGAGGGAG GACCGACCTCTCGCGATAAACCAGTCGCGTGAAAATGTTTTGACTGCGAC GGCCGTCGAACCCTTTGCACTCGCTGATGCTGGTCGTGTTTCCTCGTTCC AGTGATAGGAGAGAAGATACGTCGTGCTAGGTATGGACGAGACTCATCCC GTCCCGCCCGGCCCCGCCCCACCACCTCTGCCGTTTTTGCTCTCTCCGTA CTTAATAACATGTCTTCTTCTTCTTCCTCTCCGCCGCTGCAGGCGAGGCA AAACCGGTGCAAAGTCGTGATCCAGGGCACCCGCCATGCTGCCCAGGTCA AAGAGGTGCGTGCGGTATGGTACCTTCTTGTTTTGTACGGTTTAGATGGG CTGCGCACCCGGGGAGAGTTGCGTCCGTCGGCCATCTCCGCGACCTATGT AGGTGGTGAGCCTCTCCGCTCAAAACTTTGGCTTAGTAAGCTGGCGGCCT GCCTTCCAATCTCTAGAACCGGCACACCTCCCATCCCGTTCCCATAATGT ACATATGTTCGACATGCTGGAAGCAAGCATTGACTCCAGCGGATGTGCTC CTGTGTTTGTCGGTGGGTTTGTGGTTTTGTGGTTTTGTCGACGCCCACCG GTTCCCCGCAGGCGATGGTGCTTGATGCCCCGGACTCTCTCCAGGTGGTG TCCCTCGAGGAAGGGCACGTTGCCAAGACCGACAGGGTGGTGGTAAGTGG TGGTGAGCGTTATTTCGTGGCAAAACCGCGTACTGTATATACCAACCCAC TTGGTACATACTGTTTGTTTTAGGTGGGGTCAGTTTGTTTTGGAAGTTTG CCGGTGGGTTTTGCCGGCGCTGATCTCACTCGCTCCGTTTCTGTATGGGC ATATACAAGTGTCGATCGAAGCGGGATTCAGCTCTGTGCGGCTGCGGTTC TGTCCTTCTGATGTTTTCACCCGACAACCGATGCAGGCGTTGGTTTCGCC CGGGAACTGGAAGGGCAAGAAGGGTAAGCACCTGAGGAGGGTGCTGGCCG AGGCTCACGACGCGGCGATCATCCTCATCAACCCCACCGATCCGGACAAG TTCTTGCGAGTAAGCGCTCTGATGTCGTTGGTGCTGCTGTGCTTGAAGAG AGGAAACAAATGCTCGGAATTGTAGGTGGGATTCGCAATACGAGCAACAA CACTCCCGTGAAAGGCATGTCGACGCCTGCTTTCCGCATCCGAGGTTGCC TCCTCAGCCCGAAACCCCACCTTGCAATGCCCCCCCCTCTCTCTCACGTG CCCCCGTCTCCTCTCCGAAACAGCCGGCAGACTACAACGCCTTCGAATCG GTGTACCATCTTAGCCCCATGCGGGTCAACTACCTGCAGCCACTGCCGTC ACCGCAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2154:2465..4921-

>mRNA_L-elsbetiae_contig2154.6592.1 ID=mRNA_L-elsbetiae_contig2154.6592.1|Name=mRNA_L-elsbetiae_contig2154.6592.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig2154:2465..4921- (Laminarionema elsbetiae ELsaHSoW15)
TTCGAGCCGAGGTTGGAGCAGCAGCGGCCGCCGAAGACGAATCAGGACGC
GGCCGACGCGGCTGGTGCTGGCGTTGTGGCGGCCTTAATGGAGTTCGAGC
CGAGGTTGGAGCAGCAGCGGCCGCCGAAGACGAATCAGGACGCGGCCGAC
GCGGCTGGTGCTGGCGTTGTGGCGGCCTTAATGGAGGGGCGGAGAAGGCT
CATCGTCGAGGTGGACGACGCTCAGCTCCGCTACAACTCCCCGGACTTCT
GCCACGAAGCCATGGCGGAGTTCGTCGAGCTCCTAACCCTGCCGCTCACC
ACCGCCCTGGAGAACCTCAAGGGGCGGAGAAGGCTCATCGTCGAGGTGGA
CGACGCTCAGCTCCGCTACAACTCCCCGGACTTCTGCCACGAAGCCATGG
CGGAGTTCGTCGAGCTCCTAACCCTGCCGCTCACCACCGCCCTGGAGAAC
CTCAAGGCGAGGCAAAACCGGTGCAAAGTCGTGATCCAGGGCACCCGCCA
TGCTGCCCAGGTCAAAGAGGCGAGGCAAAACCGGTGCAAAGTCGTGATCC
AGGGCACCCGCCATGCTGCCCAGGTCAAAGAGGCGATGGTGCTTGATGCC
CCGGACTCTCTCCAGGTGGTGTCCCTCGAGGAAGGGCACGTTGCCAAGAC
CGACAGGGTGGTGGCGATGGTGCTTGATGCCCCGGACTCTCTCCAGGTGG
TGTCCCTCGAGGAAGGGCACGTTGCCAAGACCGACAGGGTGGTGGCGTTG
GTTTCGCCCGGGAACTGGAAGGGCAAGAAGGGTAAGCACCTGAGGAGGGT
GCTGGCCGAGGCTCACGACGCGGCGATCATCCTCATCAACCCCACCGATC
CGGACAAGTTCTTGCGAGCGTTGGTTTCGCCCGGGAACTGGAAGGGCAAG
AAGGGTAAGCACCTGAGGAGGGTGCTGGCCGAGGCTCACGACGCGGCGAT
CATCCTCATCAACCCCACCGATCCGGACAAGTTCTTGCGACCGGCAGACT
ACAACGCCTTCGAATCGGTGTACCATCTTAGCCCCATGCGGGTCAACTAC
CTGCAGCCACTGCCGTCACCGCAACCGGCAGACTACAACGCCTTCGAATC
GGTGTACCATCTTAGCCCCATGCGGGTCAACTACCTGCAGCCACTGCCGT
CACCGCAA
back to top