mRNA_L-elsbetiae_contig2154.6591.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2154.6591.1
Unique NamemRNA_L-elsbetiae_contig2154.6591.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2154.6591.1 vs. uniprot
Match: D7FVX0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX0_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.240e-14
Identity = 78/164 (47.56%), Postives = 91/164 (55.49%), Query Frame = -2 
Query:    3 GSGGGFEEQPEPTGEALLLERLSESVWAEEEALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------ETSLFDGAPGVGAAAAAEIEMRAAERALARAALEFGMAAATGPGIDW-------------TEGEDEKMSDEAAAAAMAAW 419
            G+GGG     +PTGEALLLERL +SVWA+EEAL A    XXXXXXXXXXX                                  + S+FD    VGAAAAAEI +RAAERALARAAL+ G +AA+G G+DW              E EDE++SDEAAAA    W
Sbjct:  452 GAGGG-----QPTGEALLLERLGKSVWAKEEALAAEALAXXXXXXXXXXXVSGPVDVVDGSSGAGDKANNTGVAGAAGAELSSEDASVFDETSAVGAAAAAEIGVRAAERALARAALKMGASAASG-GLDWGDLDIGYRDSTEWEEMEDERLSDEAAAAXXXXW 609
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BLAST of mRNA_L-elsbetiae_contig2154.6591.1 vs. uniprot
Match: A0A6H5JJW2_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJW2_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 9.130e-13
Identity = 91/168 (54.17%), Postives = 100/168 (59.52%), Query Frame = -2 
Query:    3 EPTGEALLLERLSESVWAEEEALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------ETSLFDGAPGVGAAAAAEIEMRAAERALARAALEFGMAA------------ATGPGIDW-------------TEGEDEKMSDEAAAAAMAAW 389
            +PTGEALLLERL ESVWAEEEAL A    XXXXXXXXXXXXXXX        XXXXXXXXXX                S+FD    VGAAAAAEI +RAAERALARAAL+ G +A            A    +DW              E EDE++SDEAAAAA+AAW
Sbjct:  398 QPTGEALLLERLGESVWAEEEALAAEALAXXXXXXXXXXXXXXXGPVDVVDGXXXXXXXXXXXXXXXXXXXESSSENASVFDETSAVGAAAAAEIGVRAAERALARAALKMGASAXXXXXXXXXXXSARDQQLDWGDLDIGYRDRSEWDEMEDERLSDEAAAAALAAW 565
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2154.6591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVX0_ECTSI2.240e-1447.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJW2_9PHAE9.130e-1354.17DUF1995 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2154contigL-elsbetiae_contig2154:1974..2399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size426
Cds size414
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815879.7886-UTR-L-elsbetiae_contig2154:1973..19851622815879.7886-UTR-L-elsbetiae_contig2154:1973..1985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2154 1974..1985 +
1691683164.4928508-UTR-L-elsbetiae_contig2154:1973..19851691683164.4928508-UTR-L-elsbetiae_contig2154:1973..1985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2154 1974..1985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815879.80155-CDS-L-elsbetiae_contig2154:1985..23991622815879.80155-CDS-L-elsbetiae_contig2154:1985..2399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 1986..2399 +
1691683164.509564-CDS-L-elsbetiae_contig2154:1985..23991691683164.509564-CDS-L-elsbetiae_contig2154:1985..2399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2154 1986..2399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2154.6591.1prot_L-elsbetiae_contig2154.6591.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2154 1986..2399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2154.6591.1

>prot_L-elsbetiae_contig2154.6591.1 ID=prot_L-elsbetiae_contig2154.6591.1|Name=mRNA_L-elsbetiae_contig2154.6591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
MAAAAASSDIFSSSPSVQSIPGPVAAAMPNSSAARASARSAALISISAAA
AAPTPGAPSKSDVSSGGGSEPPSTGAAATGLVVPPTPSPGIAVAAAAAAA
AASRASSSAHTDSLSRSSRSASPVGSGCSSNPPPLPPR
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mRNA from alignment at L-elsbetiae_contig2154:1974..2399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2154.6591.1 ID=mRNA_L-elsbetiae_contig2154.6591.1|Name=mRNA_L-elsbetiae_contig2154.6591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig2154:1974..2399+ (Laminarionema elsbetiae ELsaHSoW15)
CTCCACGCGGCCATGGCCGCGGCGGCCGCCTCGTCCGACATCTTCTCATC
CTCTCCCTCGGTCCAATCTATCCCAGGGCCGGTTGCGGCCGCCATGCCGA
ACTCCAGCGCAGCGCGGGCCAGCGCCCGCTCCGCGGCTCTCATCTCGATC
TCCGCCGCCGCCGCCGCGCCCACGCCAGGGGCCCCGTCGAAGAGCGACGT
CTCTTCCGGCGGTGGATCGGAACCCCCATCCACAGGAGCAGCGGCGACGG
GGCTGGTTGTGCCGCCGACGCCGTCGCCAGGAATAGCGGTGGCAGCAGCA
GCAGCAGCGGCGGCGGCTTCTAGAGCTTCCTCTTCCGCCCACACTGACTC
ACTCAGTCGCTCCAGCAGGAGCGCCTCGCCGGTGGGCTCCGGCTGCTCCT
CGAACCCGCCCCCGCTCCCGCCTCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2154:1974..2399+

>mRNA_L-elsbetiae_contig2154.6591.1 ID=mRNA_L-elsbetiae_contig2154.6591.1|Name=mRNA_L-elsbetiae_contig2154.6591.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig2154:1974..2399+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCGGCGGCCGCCTCGTCCGACATCTTCTCATCCTCTCCCTCGGT
CCAATCTATCCCAGGGCCGGTTGCGGCCGCCATGCCGAACTCCAGCGCAG
CGCGGGCCAGCGCCCGCTCCGCGGCTCTCATCTCGATCTCCGCCGCCGCC
GCCGCGCCCACGCCAGGGGCCCCGTCGAAGAGCGACGTCTCTTCCGGCGG
TGGATCGGAACCCCCATCCACAGGAGCAGCGGCGACGGGGCTGGTTGTGC
CGCCGACGCCGTCGCCAGGAATAGCGGTGGCAGCAGCAGCAGCAGCGGCG
GCGGCTTCTAGAGCTTCCTCTTCCGCCCACACTGACTCACTCAGTCGCTC
CAGCAGGAGCGCCTCGCCGGTGGGCTCCGGCTGCTCCTCGAACCCGCCCC
CGCTCCCGCCTCGCATGGCCGCGGCGGCCGCCTCGTCCGACATCTTCTCA
TCCTCTCCCTCGGTCCAATCTATCCCAGGGCCGGTTGCGGCCGCCATGCC
GAACTCCAGCGCAGCGCGGGCCAGCGCCCGCTCCGCGGCTCTCATCTCGA
TCTCCGCCGCCGCCGCCGCGCCCACGCCAGGGGCCCCGTCGAAGAGCGAC
GTCTCTTCCGGCGGTGGATCGGAACCCCCATCCACAGGAGCAGCGGCGAC
GGGGCTGGTTGTGCCGCCGACGCCGTCGCCAGGAATAGCGGTGGCAGCAG
CAGCAGCAGCGGCGGCGGCTTCTAGAGCTTCCTCTTCCGCCCACACTGAC
TCACTCAGTCGCTCCAGCAGGAGCGCCTCGCCGGTGGGCTCCGGCTGCTC
CTCGAACCCGCCCCCGCTCCCGCCTCGC
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