mRNA_L-elsbetiae_contig21528.6589.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21528.6589.1
Unique NamemRNA_L-elsbetiae_contig21528.6589.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig21528.6589.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.360e-9
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1 
Query:    1 SLARSIRKGRGDRKPETDENGRTTVGVDLFDHKLRNGTECKIYDVAGQISYYGLHQYFLTERAVYVIV 204
            SL  SI   RG R   T E   +TVG++L  H  RNG   + YD AGQ+ YYG+HQ FLT RA+Y++V
Sbjct:  399 SLLNSIVNERGSRTVGTSEEV-STVGIELRRHHQRNGRIVEFYDCAGQVDYYGMHQTFLTRRALYLLV 465
[Close]
BLAST of mRNA_L-elsbetiae_contig21528.6589.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 5.790e-8
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 SLARSIRKGRGDRKPETDENGRTTVGVDLFDHKLRNGTECKIYDVAGQISYYGLHQYFLTERAVYVIV 204
            SL  SI +GRG     T     +TVG++L  H L+ GT  + YD AGQ+ YYG+HQ FLT RA+Y++V
Sbjct:  238 SLVNSIVEGRGLPTVGTPAEV-STVGIELLRHNLQ-GTAVEFYDCAGQVDYYGMHQNFLTRRALYLLV 303
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21528.6589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVX5_ECTSI1.360e-950.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JW02_9PHAE5.790e-848.53Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21528contigL-elsbetiae_contig21528:1424..1889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue3.3e-08
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size205
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815879.4465852-CDS-L-elsbetiae_contig21528:1424..14841622815879.4465852-CDS-L-elsbetiae_contig21528:1424..1484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21528 1425..1484 -
1691683164.1952865-CDS-L-elsbetiae_contig21528:1424..14841691683164.1952865-CDS-L-elsbetiae_contig21528:1424..1484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21528 1425..1484 -
1622815879.4585667-CDS-L-elsbetiae_contig21528:1745..18891622815879.4585667-CDS-L-elsbetiae_contig21528:1745..1889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21528 1746..1889 -
1691683164.2084546-CDS-L-elsbetiae_contig21528:1745..18891691683164.2084546-CDS-L-elsbetiae_contig21528:1745..1889Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21528 1746..1889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21528.6589.1prot_L-elsbetiae_contig21528.6589.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21528 1425..1889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21528.6589.1

>prot_L-elsbetiae_contig21528.6589.1 ID=prot_L-elsbetiae_contig21528.6589.1|Name=mRNA_L-elsbetiae_contig21528.6589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=68bp
SLARSIRKGRGDRKPETDENGRTTVGVDLFDHKLRNGTECKIYDVAGQIS
YYGLHQYFLTERAVYVIV
back to top

mRNA from alignment at L-elsbetiae_contig21528:1424..1889-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21528.6589.1 ID=mRNA_L-elsbetiae_contig21528.6589.1|Name=mRNA_L-elsbetiae_contig21528.6589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=466bp|location=Sequence derived from alignment at L-elsbetiae_contig21528:1424..1889- (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGCGAGGAGCATCAGGAAGGGACGCGGGGACAGAAAGCCGGAGAC
AGACGAGAACGGGCGGACAACCGTTGGAGTCGACCTTTTCGACCACAAGT
TGAGGAACGGCACCGAGTGCAAGATCTATGACGTCGCTGGACAGGTGTGG
TCGTCTCGTCATGATGCATTGATGTTCAGCCGGGCGAGGCCTCGTACGTA
GTGAGTAACTGTGGCAACTTGACAGAGTAGTATCTCAGGCGCGGTACGTC
AGCGACCCAAAACGGCTTTGACGACTGCATGGGCAGGCAACTATTGGCTC
TTGCTGCACCTTTCCTAGACAGATTTCCCCTTTCAAATACCACCTCATAT
TGCAAGTATGATCTAACCGGACATACACTTTCGCCGTGCTATTTCCGTTT
CCCAGATCTCCTACTACGGCTTGCACCAGTACTTCCTCACTGAGAGGGCG
GTGTACGTGATCGTGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig21528:1424..1889-

>mRNA_L-elsbetiae_contig21528.6589.1 ID=mRNA_L-elsbetiae_contig21528.6589.1|Name=mRNA_L-elsbetiae_contig21528.6589.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=408bp|location=Sequence derived from alignment at L-elsbetiae_contig21528:1424..1889- (Laminarionema elsbetiae ELsaHSoW15)
AGCCTCGCGAGGAGCATCAGGAAGGGACGCGGGGACAGAAAGCCGGAGAC
AGACGAGAACGGGCGGACAACCGTTGGAGTCGACCTTTTCGACCACAAGT
TGAGGAACGGCACCGAGTGCAAGATCTATGACGTCGCTGGACAGAGCCTC
GCGAGGAGCATCAGGAAGGGACGCGGGGACAGAAAGCCGGAGACAGACGA
GAACGGGCGGACAACCGTTGGAGTCGACCTTTTCGACCACAAGTTGAGGA
ACGGCACCGAGTGCAAGATCTATGACGTCGCTGGACAGATCTCCTACTAC
GGCTTGCACCAGTACTTCCTCACTGAGAGGGCGGTGTACGTGATCGTGAT
CTCCTACTACGGCTTGCACCAGTACTTCCTCACTGAGAGGGCGGTGTACG
TGATCGTG
back to top