mRNA_L-elsbetiae_contig2152.6588.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2152.6588.1
Unique NamemRNA_L-elsbetiae_contig2152.6588.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: D7FKX5_ECTSI (Amidohydro-rel domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKX5_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 5.470e-63
Identity = 91/108 (84.26%), Postives = 101/108 (93.52%), Query Frame = 1
Query:   10 QGFCGVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGVIDEAAWEQLLALAEYPQVFVKTSALFRVA 333
            QGFCGVRFNPYLWPEGGEGMKD+TG+AL+RKAGEL  PVGVMCFKGFGRHVEEI+ LL SSPQTKLV+DHFGFFLQDG IDE AW+Q+LAL++YP VF+KTSALFRVA
Sbjct:   60 QGFCGVRFNPYLWPEGGEGMKDDTGVALFRKAGELGLPVGVMCFKGFGRHVEEIEALLLSSPQTKLVVDHFGFFLQDGEIDETAWKQVLALSKYPSVFIKTSALFRVA 167          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A835YUE6_9STRA (Amidohydro-rel domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUE6_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.430e-44
Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 MRCQGFCGVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGVIDEAAWEQLLALAEYPQVFVKTSALFRVA 333
            ++ QGFC VRFNPYLWPEG +GM ++ G  +Y+KAGEL  PVG MCFKG  RH  +I  LL  +PQT+ +IDHFGFF Q+GV ++ +W+QLLALA+YPQV+VKTSA FRV+
Sbjct:   58 LQRQGFCSVRFNPYLWPEG-QGMSNDFGRQVYKKAGELKMPVGFMCFKGLRRHYSDITALLQCAPQTQAIIDHFGFFRQEGVTEDESWQQLLALAQYPQVYVKTSAFFRVS 167          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A812UFK1_9DINO (LigI protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812UFK1_9DINO)

HSP 1 Score: 134 bits (337), Expect = 3.720e-37
Identity = 66/110 (60.00%), Postives = 83/110 (75.45%), Query Frame = 1
Query:   22 GVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQ------DGVIDEAAWEQLLALAEYPQVFVKTSALFRVA 333
            GVRFNPY WP G + M D+TG AL+RKAGEL+ PVG M FKG  +HVE+I+ L+ SSP T+++IDH+GFFLQ      +  +DEA+WE LL L+ YPQV VK SALFRV+
Sbjct:   38 GVRFNPYKWPAG-QSMADDTGKALFRKAGELSLPVGFMPFKGLSQHVEDIEALMKSSPSTQVIIDHWGFFLQPATGFGERALDEASWEALLRLSSYPQVHVKISALFRVS 146          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A1Q9D3S2_SYMMI (2-pyrone-4,6-dicarbaxylate hydrolase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D3S2_SYMMI)

HSP 1 Score: 131 bits (329), Expect = 3.230e-36
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   10 QGFCGVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGV------IDEAAWEQLLALAEYPQVFVKTSALFRVA 333
            +G+ GVRFNPY WP G + M D TG AL+ KAGEL  PVG M FKG  +HVE+I+ L+ SSP+T+++IDH+GFFLQ         +DEA+W+ LL L+ YPQV VK SALFRV+
Sbjct:   58 KGWVGVRFNPYKWPAG-QSMADATGKALFGKAGELRLPVGFMPFKGLSQHVEDIEALMKSSPETQVIIDHWGFFLQPATGFGERSLDEASWDALLKLSAYPQVHVKISALFRVS 170          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A812XUJ4_9DINO (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812XUJ4_9DINO)

HSP 1 Score: 131 bits (329), Expect = 1.110e-34
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 1
Query:   10 QGFCGVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGV------IDEAAWEQLLALAEYPQVFVKTSALFRVA 333
            +G+ GVRFNPY WP G + M D TG AL+ KAGEL  PVG M FKG  +HVE+I+ L+ SSP+T+++IDH+GFFLQ         +DEA+W+ LL L+ YPQV VK SALFRV+
Sbjct:  162 KGWVGVRFNPYKWPAG-QSMADATGKALFGKAGELRLPVGFMPFKGLSQHVEDIEALMKSSPETQVIIDHWGFFLQPATGFGERSLDEASWDALLKLSAYPQVHVKISALFRVS 274          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A7S2CKL7_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CKL7_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.180e-33
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 1
Query:   10 QGFCGVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGVIDEAAWEQLLALAEYPQVFVKTSALFR 327
            +GF GVRFNP LWPEG E M ++ G ++++KAG L  PVG+MCFKG   H+ +I+ LL+  P+TK +IDH GF  QD  + +++WE+L  LA+YPQV+VK SA  R
Sbjct:   60 EGFVGVRFNPSLWPEG-ETMSNKVGSSMFKKAGNLGMPVGIMCFKGLDPHLADIEALLSEHPKTKCIIDHMGFMYQDDTVLDSSWEKLHKLAKYPQVYVKVSAFAR 164          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A7S2RW45_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW45_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.310e-32
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 MRCQGFCGVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGVIDEAAWEQLLALAEYPQVFVKTSALFR 327
            M   G  GVRFNPYLWPEG E + +E G A + KAG+L   VG+MCFKGFG H  EI+ L+   P TK +IDH GF+ Q+GV+ E  +E+LL L  +P V++K SA FR
Sbjct:  171 MATSGIVGVRFNPYLWPEG-EKINNEVGAAAFEKAGDLGMAVGIMCFKGFGLHAAEIEDLVARFPNTKCIIDHMGFYRQNGVVAEEDFERLLELERFPNVYIKASAFFR 278          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A4D9D9W7_9STRA (Amidohydro-rel domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9W7_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.440e-32
Identity = 64/128 (50.00%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    1 MRCQGFCGVRFNPYLWPEG-----------------GEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGVIDEAAWEQLLALAEYPQVFVKTSALFRVA 333
            ++ QGF  VRFNPY+WP G                 G+GM + TG ALY +AG    PVG M FKG   H+ E++ LL  SPQT++VIDH+GFF Q G +   AW  LL+LAEYPQV VK SA FRV+
Sbjct:  116 LQSQGFNSVRFNPYIWPAGEKVRRENKGGERHRRGEGKGMDNPTGRALYAEAGRRTMPVGHMLFKGLHLHLPEVQALLNLSPQTRVVIDHWGFFHQQGRLVPEAWAALLSLAEYPQVHVKISAFFRVS 243          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A6T1Z3Z2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6T1Z3Z2_9EUGL)

HSP 1 Score: 123 bits (308), Expect = 8.240e-32
Identity = 65/117 (55.56%), Postives = 78/117 (66.67%), Query Frame = 1
Query:   10 QGFCGVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQD---------GVIDEAAWEQLLALAEYPQVFVKTSALFRVA 333
            QGF  VRFNP L+P+G   +    G AL+ KAGEL  PVG+MCF GF      I+ L+ SSP T +VIDH+GFF Q          GV DE AWE+LLALA+YPQV+VK SALFRV+
Sbjct:  124 QGFVAVRFNPALFPDG---LDSPVGKALFEKAGELVLPVGIMCFSGFTAQAPAIEALMKSSPDTTVVIDHWGFFRQPATGGLLGDAGVNDEEAWEKLLALAQYPQVYVKVSALFRVS 237          
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Match: A0A7S1Z3V0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z3V0_TRICV)

HSP 1 Score: 122 bits (306), Expect = 2.190e-31
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = 1
Query:    1 MRCQGFCGVRFNPYLWPEGGEGMKDE--TGIALYRKAGELNCPVGVMCFKGFGRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGVIDEAAWEQLLALAEYPQVFVKTSALFRVA 333
            +   G+ GVRFNPYLWPEG + M +E   G+A+Y++ GEL  PVGVMCFKG   H ++I  L+ SSP T L++DH GF   D   D AA+EQLL+LA+YP V VK SALFRVA
Sbjct:  152 LTLDGYVGVRFNPYLWPEGAK-MSEEGGCGLAVYKRCGELKMPVGVMCFKGLELHYDDIVRLIESSPDTALILDHLGFTGLDERGD-AAFEQLLSLAKYPNVVVKVSALFRVA 262          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2152.6588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX5_ECTSI5.470e-6384.26Amidohydro-rel domain-containing protein n=2 Tax=E... [more]
A0A835YUE6_9STRA1.430e-4462.16Amidohydro-rel domain-containing protein n=1 Tax=T... [more]
A0A812UFK1_9DINO3.720e-3760.00LigI protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A1Q9D3S2_SYMMI3.230e-3657.022-pyrone-4,6-dicarbaxylate hydrolase n=2 Tax=Symbi... [more]
A0A812XUJ4_9DINO1.110e-3457.02Hypothetical protein n=2 Tax=Symbiodinium TaxID=29... [more]
A0A7S2CKL7_9STRA2.180e-3352.83Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S2RW45_9STRA1.310e-3253.21Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9D9W7_9STRA3.440e-3250.00Amidohydro-rel domain-containing protein n=1 Tax=N... [more]
A0A6T1Z3Z2_9EUGL8.240e-3255.56Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1Z3V0_TRICV2.190e-3156.64Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2152contigL-elsbetiae_contig2152:19794..20694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.2
Seed ortholog evalue1.3e-49
Seed eggNOG ortholog2880.D7FKX5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Amidohydrolase
EggNOG OGs28N8S@1,2QUU3@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAmidohydrolase 2
Ec32 orthologEc-17_001730.1
Exons3
Model size333
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2152.6588.1prot_L-elsbetiae_contig2152.6588.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2152 19794..20694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815879.3823142-CDS-L-elsbetiae_contig2152:19793..198391622815879.3823142-CDS-L-elsbetiae_contig2152:19793..19839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2152 19794..19839 -
1691683164.1485372-CDS-L-elsbetiae_contig2152:19793..198391691683164.1485372-CDS-L-elsbetiae_contig2152:19793..19839Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2152 19794..19839 -
1622815879.3936455-CDS-L-elsbetiae_contig2152:20141..202241622815879.3936455-CDS-L-elsbetiae_contig2152:20141..20224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2152 20142..20224 -
1691683164.1599615-CDS-L-elsbetiae_contig2152:20141..202241691683164.1599615-CDS-L-elsbetiae_contig2152:20141..20224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2152 20142..20224 -
1622815879.410038-CDS-L-elsbetiae_contig2152:20490..206941622815879.410038-CDS-L-elsbetiae_contig2152:20490..20694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2152 20491..20694 -
1691683164.173551-CDS-L-elsbetiae_contig2152:20490..206941691683164.173551-CDS-L-elsbetiae_contig2152:20490..20694Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2152 20491..20694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2152.6588.1

>prot_L-elsbetiae_contig2152.6588.1 ID=prot_L-elsbetiae_contig2152.6588.1|Name=mRNA_L-elsbetiae_contig2152.6588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MRCQGFCGVRFNPYLWPEGGEGMKDETGIALYRKAGELNCPVGVMCFKGF
GRHVEEIKTLLTSSPQTKLVIDHFGFFLQDGVIDEAAWEQLLALAEYPQV
FVKTSALFRVA
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mRNA from alignment at L-elsbetiae_contig2152:19794..20694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2152.6588.1 ID=mRNA_L-elsbetiae_contig2152.6588.1|Name=mRNA_L-elsbetiae_contig2152.6588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=901bp|location=Sequence derived from alignment at L-elsbetiae_contig2152:19794..20694- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATGCCAGGGCTTTTGCGGCGTGAGATTCAATCCTTACCTTTGGCC GGAAGGGGGGGAAGGTATGAAGGATGAAACGGGCATTGCCCTCTATCGGA AGGCGGGTGAGCTGAATTGCCCCGTTGGCGTCATGTGCTTCAAAGGCTTC GGACGGCACGTCGAAGAGATAAAGACACTGCTAACATCGTCACCGCAAAC AAAGGTGTGCGACATATCTGGGCCGAGTGGTACCCACTCGCTATACACTA CCATCCCCACCGTGAGGTCTTGAAAGGTCTTGCCTCTACCTGCCACGTTA TATCCTTCGGCTTAATGCGGGCTGTGAAAAGGGAGTAGCTGGGCAATCGT TCGTCGACTGTTGATTCGCGGTACATATATTTGGTTTAATCCCTCTGCTC CCTATCGTCTCCAATCGCGACGAATGTGCCATTTACTACTGTGCTGTCGT TTCTTCTGGTCCCAACGCAGTTGGTGATTGATCATTTCGGGTTCTTCCTT CAGGATGGAGTGATCGACGAGGCGGCGTGGGAGCAGCTGTTGGCCCTGGC TGAGTGAGTGAGCTGCTATTTTCGCACTGCTGTTATGTTGTTGTGATCTC TTGTGCACTCCGTCGGAATACCCAAAAACTCGTGTTGCTAGTGGTTGTGC ACTAAAACGCCGTAGTTCTGGCCCGCTGGGTACATGTCGTCGTCCTCCAG GATATCTGCCTTCTTGCGTGGATGCACAAATCTGTGAACCCAAAAACATG TTCCGCTGCCCCTTGGAGATTAAAGCGTTCAGCTACAAGATGGAGCAACA TTTGCTATCTATAGTCGTCTGAACTGTTGACACGCTTGTACTGCATCATC GACAGGTACCCGCAGGTGTTCGTGAAGACGAGTGCTTTGTTTCGAGTTGC G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2152:19794..20694-

>mRNA_L-elsbetiae_contig2152.6588.1 ID=mRNA_L-elsbetiae_contig2152.6588.1|Name=mRNA_L-elsbetiae_contig2152.6588.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig2152:19794..20694- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGATGCCAGGGCTTTTGCGGCGTGAGATTCAATCCTTACCTTTGGCC
GGAAGGGGGGGAAGGTATGAAGGATGAAACGGGCATTGCCCTCTATCGGA
AGGCGGGTGAGCTGAATTGCCCCGTTGGCGTCATGTGCTTCAAAGGCTTC
GGACGGCACGTCGAAGAGATAAAGACACTGCTAACATCGTCACCGCAAAC
AAAGATGCGATGCCAGGGCTTTTGCGGCGTGAGATTCAATCCTTACCTTT
GGCCGGAAGGGGGGGAAGGTATGAAGGATGAAACGGGCATTGCCCTCTAT
CGGAAGGCGGGTGAGCTGAATTGCCCCGTTGGCGTCATGTGCTTCAAAGG
CTTCGGACGGCACGTCGAAGAGATAAAGACACTGCTAACATCGTCACCGC
AAACAAAGTTGGTGATTGATCATTTCGGGTTCTTCCTTCAGGATGGAGTG
ATCGACGAGGCGGCGTGGGAGCAGCTGTTGGCCCTGGCTGATTGGTGATT
GATCATTTCGGGTTCTTCCTTCAGGATGGAGTGATCGACGAGGCGGCGTG
GGAGCAGCTGTTGGCCCTGGCTGAGTACCCGCAGGTGTTCGTGAAGACGA
GTGCTTTGTTTCGAGTTGCGGTACCCGCAGGTGTTCGTGAAGACGAGTGC
TTTGTTTCGAGTTGCG
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