mRNA_L-elsbetiae_contig2151.6583.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2151.6583.1
Unique NamemRNA_L-elsbetiae_contig2151.6583.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig2151.6583.1 vs. uniprot
Match: D8LLD2_ECTSI (UBX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD2_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 9.280e-53
Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 1 
Query:  298 AELLGPWGRGTPEDELRAEQAAEGDEVESEEAQVPQEPDAGNGVTQVQFRLQGGGTVARRFWLKDRVSLLFRFVRTTGEEASTRPFDLLSGHPPSSLLRSKVLTLEAANLSNSAIMVRWL 657
            A L+GPWGRGTPEDELRA  A EG  V  E  +V QEPDAGNGVTQVQFRL GGGT+ARRFWLKDRVSLLF+FVRTTGEEA+TRPFDLLSGHPPSSLL SKV TLEAANLSNSAIMVRWL
Sbjct:  559 AGLVGPWGRGTPEDELRAAGAGEG--VLGESVEVLQEPDAGNGVTQVQFRLAGGGTIARRFWLKDRVSLLFQFVRTTGEEAATRPFDLLSGHPPSSLLGSKVSTLEAANLSNSAIMVRWL 676
[Close]
BLAST of mRNA_L-elsbetiae_contig2151.6583.1 vs. uniprot
Match: A0A6H5JRV7_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV7_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.050e-52
Identity = 101/120 (84.17%), Postives = 106/120 (88.33%), Query Frame = 1 
Query:  298 AELLGPWGRGTPEDELRAEQAAEGDEVESEEAQVPQEPDAGNGVTQVQFRLQGGGTVARRFWLKDRVSLLFRFVRTTGEEASTRPFDLLSGHPPSSLLRSKVLTLEAANLSNSAIMVRWL 657
            A L+GPWGRGTPEDELRAE A +G  V  E   VPQEPDAGNGVTQVQFRL GGGT+ARRFWL DRVSLLF+FVRTTGEEA+TRPFDLLSGHPPSSLL SKV TLEAANLSNSAIMVRWL
Sbjct:  739 AGLVGPWGRGTPEDELRAEGAGQG--VLGEPVDVPQEPDAGNGVTQVQFRLAGGGTIARRFWLNDRVSLLFQFVRTTGEEAATRPFDLLSGHPPSSLLGSKVSTLEAANLSNSAIMVRWL 856
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2151.6583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLD2_ECTSI9.280e-5384.17UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JRV7_9PHAE1.050e-5284.17UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2151contigL-elsbetiae_contig2151:841..3166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue6.8e-47
Seed eggNOG ortholog2880.D8LLD2
Preferred nameUBXN7
KEGG rclassRC00029
KEGG koko:K00006
KEGG ReactionR00842
KEGG Pathwayko00564,ko01110,ko04011,map00564,map01110,map04011
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0012505,GO:0016020,GO:0016604,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0030674,GO:0031625,GO:0031974,GO:0031981,GO:0031984,GO:0032182,GO:0032991,GO:0034098,GO:0036211,GO:0042175,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0051603,GO:0060090,GO:0070013,GO:0071704,GO:0098796,GO:0098827,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.ubiquitin binding
EggNOG OGsKOG1364@1,KOG1364@2759
EC1.1.1.8
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size894
Cds size660
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2151.6583.1prot_L-elsbetiae_contig2151.6583.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2151 841..2933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815878.6903353-CDS-L-elsbetiae_contig2151:840..12661622815878.6903353-CDS-L-elsbetiae_contig2151:840..1266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2151 841..1266 +
1691683163.5820837-CDS-L-elsbetiae_contig2151:840..12661691683163.5820837-CDS-L-elsbetiae_contig2151:840..1266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2151 841..1266 +
1622815878.7008374-CDS-L-elsbetiae_contig2151:2009..21111622815878.7008374-CDS-L-elsbetiae_contig2151:2009..2111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2151 2010..2111 +
1691683163.6006348-CDS-L-elsbetiae_contig2151:2009..21111691683163.6006348-CDS-L-elsbetiae_contig2151:2009..2111Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2151 2010..2111 +
1622815878.7142813-CDS-L-elsbetiae_contig2151:2801..29331622815878.7142813-CDS-L-elsbetiae_contig2151:2801..2933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2151 2802..2933 +
1691683163.61044-CDS-L-elsbetiae_contig2151:2801..29331691683163.61044-CDS-L-elsbetiae_contig2151:2801..2933Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2151 2802..2933 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815878.7292287-UTR-L-elsbetiae_contig2151:2933..31661622815878.7292287-UTR-L-elsbetiae_contig2151:2933..3166Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2151 2934..3166 +
1691683163.6187289-UTR-L-elsbetiae_contig2151:2933..31661691683163.6187289-UTR-L-elsbetiae_contig2151:2933..3166Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2151 2934..3166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2151.6583.1

>prot_L-elsbetiae_contig2151.6583.1 ID=prot_L-elsbetiae_contig2151.6583.1|Name=mRNA_L-elsbetiae_contig2151.6583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
GSSFDGDDNNSSNPNTSPGSRSVTNTNNSSPATTRAPTPTPTGPATAVTA
AAAAATTGSSPPRSTPRRLSAEGGGGEGDRKPAAEKEDSSAAATATAAAA
ELLGPWGRGTPEDELRAEQAAEGDEVESEEAQVPQEPDAGNGVTQVQFRL
QGGGTVARRFWLKDRVSLLFRFVRTTGEEASTRPFDLLSGHPPSSLLRSK
VLTLEAANLSNSAIMVRWL*
back to top

mRNA from alignment at L-elsbetiae_contig2151:841..3166+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2151.6583.1 ID=mRNA_L-elsbetiae_contig2151.6583.1|Name=mRNA_L-elsbetiae_contig2151.6583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2326bp|location=Sequence derived from alignment at L-elsbetiae_contig2151:841..3166+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCGAGCTTCGACGGCGACGACAACAACAGCAGCAACCCCAACACCTC
CCCGGGGTCTCGCAGCGTCACCAACACCAACAACTCCTCGCCCGCCACCA
CCCGCGCGCCCACCCCGACCCCGACCGGCCCCGCCACCGCGGTTACCGCC
GCCGCCGCCGCCGCCACCACCGGCAGCAGCCCCCCGCGATCAACCCCGCG
ACGTCTCTCGGCGGAAGGCGGGGGAGGCGAGGGCGACAGGAAGCCGGCGG
CCGAAAAGGAGGATAGTAGTGCGGCGGCGACGGCGACGGCGGCGGCTGCG
GAGCTGCTAGGGCCGTGGGGCCGGGGGACGCCGGAAGACGAGCTGCGGGC
GGAGCAAGCAGCTGAGGGAGACGAGGTGGAGTCGGAGGAGGCGCAGGTAC
CCCAAGAGCCTGATGCGGGGAACGGGGTGAGATGGAGGCTGGGGGCTCGA
TGACGCGATCTAAGTGACGCCATTTCGGGTGGTGGGAGGGGGCCAGAGAG
GGAGGGAGAGAGGGAGGGAGGGGTAAAAGGGGGAGCGATTTTTTTTGTTG
TTGTTAGGCCCGAGCTGTAGGCGGAGCTCTCTCTACCTCCACGCCCGAGT
GCTAGTGGCGGCATTTCCCTGCAATGCTTTCCCGAAGCTGTGTTGCTTTC
GCGGTTTTGTTGCCTCCGCTCTTCCCCCGCCTTGTTGGATTATTTGTGTC
CCGTATCTATGCACCTACATATTTCTGCCTTTTTCTGGTGTTGTGTCTCG
GAAGGAGGGCGTCAACAAAACCATGTTCCTACCTAATTTAGGAGTACAAA
ATTGCACATGCATATACGAACATACATAGAATCAGGGTCGATTGGTTCAG
GTCCACGATGACGCACTTGTACCTACAAATAGGCTTTGATGATTCGTTTC
TTCGTTCACATGTTTTGAGGTGCATTACGTATGTATGATATCTCATCATC
AAGCTGTGCATCTCAGGGGAGGGAAGAACCCTTCCGTGTGACCGCGGACC
AGAGCTCTGGCTTAAGAAGATGTCAGCCTCTGAGGGCCTGTTTGATGTGA
CTGAAAAAAAAAAAAAAAACTCTGTGCTCTCATGTTTTTGATGTCACGCA
AGTATCACATATTTACGTCACGGTCTCTGCCGTGCTGTCTTTTTTGTTTG
TCTTTTGCGCGCGCGCCAGGTGACCCAGGTGCAGTTCCGGCTGCAGGGGG
GCGGGACGGTCGCGCGCCGCTTCTGGCTCAAGGATCGGGTGTCGCTTCTC
TTCCGATTCGTCCGAACGACGGTGCGGCGGTAGTTTCCTCGCCGCAACTG
GCCATGAGCCCGTCATGTTCCCGCGCGTGTGTGTGTTGTTTTGCGATTTG
CGTTCTCGTTCGTTGTTTGTCATGTTAATGCCGTGCCCTGCCGCAGTCCC
TGCATAGACCTTACCATAGATCGCCTTGCGTCCCCTTATACAAAGCAGGG
CGGCAAGGCCAAGAAAGGAGCACCGTTTTCTGGTTTTGTTCGTCCTCGAC
TCGATTGAATCACGCGCGTGCGCGCGGGGGGTGGGGTCTGGTTGTCAGGC
TTCTACGGCAGGGGCGGGAATTGTGTAGTGCTCGACTTGTTGGTGTTGGT
GACGAGCGACAGCAGGGGGGGCTGTTTCGATTGCACGTTGTGTACGCCGC
TTTAAATAAGGAGTGTTCCAGTTTTCCGGCATCGTTTCCGGTCCATCTGA
TGTGTCGTAGTCCATATAATCTTCCCCACCGTTTGACAAGACCTTTGTTT
TCCCCACCGGCGCTTGTCTCTCTTGCTGTGCTGCCTCTCTCCCTCTGTCT
TACTCGCTTTCTTTCTTTCTTTCTTTCTCTGTCTCCCTCTCCCTCTCCCT
CTCCCTCTCTCTCTTACTATACGCTTGGTATCGGGTTGGTGCTTGTCGTC
CTGGAACCGTTTGTTCGTTGGGATGTCGGATCGAATCGGCCATCAACAAA
CCTAAAAAAAGGGAGAGGAAGCGTCTACCAGGCCGTTCGATCTCCTGTCC
GGCCACCCTCCTTCGTCTCTGTTGCGTAGCAAGGTTTTGACCCTGGAGGC
CGCCAACCTCAGCAACTCGGCCATCATGGTGCGGTGGTTGTGACGCATTT
ACTACGTAGGTAAAGTAGTACGTGAAGCGATTTGTTTTTTTGGTCACGTG
TTTTTCACCAGGCAAAACAGGATAAAAGAAAAAGCACACACAAAATAAAA
GCTATCCAGACGCGCGCGTGGTGGGAATCACCCAGCCGGTCAAGTCAGCC
CAGGACACGATTGGGGGCGTGCCGGGTGGAGTGGGTAGAGAAAAGGGGGA
GGGGGGAGAGTAACAGAGCGCCAGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2151:841..3166+

>mRNA_L-elsbetiae_contig2151.6583.1 ID=mRNA_L-elsbetiae_contig2151.6583.1|Name=mRNA_L-elsbetiae_contig2151.6583.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig2151:841..3166+ (Laminarionema elsbetiae ELsaHSoW15)
GGATCGAGCTTCGACGGCGACGACAACAACAGCAGCAACCCCAACACCTC
CCCGGGGTCTCGCAGCGTCACCAACACCAACAACTCCTCGCCCGCCACCA
CCCGCGCGCCCACCCCGACCCCGACCGGCCCCGCCACCGCGGTTACCGCC
GCCGCCGCCGCCGCCACCACCGGCAGCAGCCCCCCGCGATCAACCCCGCG
ACGTCTCTCGGCGGAAGGCGGGGGAGGCGAGGGCGACAGGAAGCCGGCGG
CCGAAAAGGAGGATAGTAGTGCGGCGGCGACGGCGACGGCGGCGGCTGCG
GAGCTGCTAGGGCCGTGGGGCCGGGGGACGCCGGAAGACGAGCTGCGGGC
GGAGCAAGCAGCTGAGGGAGACGAGGTGGAGTCGGAGGAGGCGCAGGTAC
CCCAAGAGCCTGATGCGGGGAACGGGGGATCGAGCTTCGACGGCGACGAC
AACAACAGCAGCAACCCCAACACCTCCCCGGGGTCTCGCAGCGTCACCAA
CACCAACAACTCCTCGCCCGCCACCACCCGCGCGCCCACCCCGACCCCGA
CCGGCCCCGCCACCGCGGTTACCGCCGCCGCCGCCGCCGCCACCACCGGC
AGCAGCCCCCCGCGATCAACCCCGCGACGTCTCTCGGCGGAAGGCGGGGG
AGGCGAGGGCGACAGGAAGCCGGCGGCCGAAAAGGAGGATAGTAGTGCGG
CGGCGACGGCGACGGCGGCGGCTGCGGAGCTGCTAGGGCCGTGGGGCCGG
GGGACGCCGGAAGACGAGCTGCGGGCGGAGCAAGCAGCTGAGGGAGACGA
GGTGGAGTCGGAGGAGGCGCAGGTACCCCAAGAGCCTGATGCGGGGAACG
GGGTGACCCAGGTGCAGTTCCGGCTGCAGGGGGGCGGGACGGTCGCGCGC
CGCTTCTGGCTCAAGGATCGGGTGTCGCTTCTCTTCCGATTCGTCCGAAC
GACGGTGACCCAGGTGCAGTTCCGGCTGCAGGGGGGCGGGACGGTCGCGC
GCCGCTTCTGGCTCAAGGATCGGGTGTCGCTTCTCTTCCGATTCGTCCGA
ACGACGGGAGAGGAAGCGTCTACCAGGCCGTTCGATCTCCTGTCCGGCCA
CCCTCCTTCGTCTCTGTTGCGTAGCAAGGTTTTGACCCTGGAGGCCGCCA
ACCTCAGCAACTCGGCCATCATGGTGCGGTGGTTGTGAGGAGAGGAAGCG
TCTACCAGGCCGTTCGATCTCCTGTCCGGCCACCCTCCTTCGTCTCTGTT
GCGTAGCAAGGTTTTGACCCTGGAGGCCGCCAACCTCAGCAACTCGGCCA
TCATGGTGCGGTGGTTGTGA
back to top