mRNA_L-elsbetiae_contig2150.6581.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2150.6581.1
Unique NamemRNA_L-elsbetiae_contig2150.6581.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2150.6581.1 vs. uniprot
Match: D8LAU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU9_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 4.390e-92
Identity = 190/313 (60.70%), Postives = 212/313 (67.73%), Query Frame = 1 
Query:   55 MRFQATAFFSSPLRSHMPLPRG---------------GPWSSSPQETAASTPIRRSRRRQPSCRSYSSLFDSSDGASGGDEEKA-DGLPEGAPSSSXXXXXXXXXXXXAAVDGIGDVAEGNPEPRADEQITAP----GAT-DPPVAAEGAAAAAGE---EQQGDWDKAWASTRQRMEKEKKAAPAFSGRKQVVASKNADGGYDFQEISADGSSRMQGDKGSGGFGFADSSQVEDGPGRVRRQEQEAVNLATTNQAFAGLFALLLASLIFEVYVYMSGGITNGSTRFQGIGQPTTYDALPLPATPPPPEDDLTV 921
            M FQATAF SSP+R++ PL R                G W SSP    + T   R R  +P    Y+SLFDS      GDE  A D  P    + S            +   G        P PRADEQ+T      GAT + P  AEG AAAAGE   E+Q DWDKAWASTRQRME+EK+AAPAFSGRKQVVA+KN DGGYDF+EISADGSSRM+GDKG GGFGFADS+QVEDGPG +RR+EQEAVN ATTNQAFAGLFA+LLASLIFEVYVYMSGGITNGSTRFQ +GQPTTYDALPLPATPP  + DL V
Sbjct:    1 MGFQATAF-SSPIRANKPLQRPXXXXXXXXXXXXLGVGGWLSSPPRAISRTSSSRRRPHRP----YASLFDS------GDENNARDDSPNPGNADSQGEAPESESAPSSPDGGA------KPVPRADEQLTGSLADAGATGEGPPQAEGEAAAAGEGAEEEQVDWDKAWASTRQRMEREKRAAPAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGFADSNQVEDGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTYDALPLPATPPT-DSDLVV 295
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BLAST of mRNA_L-elsbetiae_contig2150.6581.1 vs. uniprot
Match: A0A836C767_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C767_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.030e-11
Identity = 62/194 (31.96%), Postives = 94/194 (48.45%), Query Frame = 1 
Query:  418 PPVAAEGAAAAAGEEQQG------DWDKAWASTRQRMEKEKKAA-----------------PAFSGRKQVVASKNADGGYDFQEISADGSSRMQGDKGSGGFGF-ADSSQVEDGPGRVRRQEQEAVNLATTNQAFAGLFALLLASLIFEVYVYMSGGITNGSTRFQGIGQPTTY--DALPLPATPPPPEDDLTV 921
            PP +  GA A A  E  G      DWD AWA+ ++ M      +                 PAF+GRK+++ + N + GY + EI A G     G+   GGF    DS Q++D   R+  +E++ V     +Q F    AL+   L F + V M+GGI++G++RF+ +  P      A+P P+    P+DDL V
Sbjct:   92 PPSSESGADAGASAEAAGGSNAPVDWDGAWAAKQKEMGNGDSGSDDSARAVEPXXXXXVSRPAFAGRKEIIVTGNKEEGYTYTEIDASGRVSRAGEA-DGGFRLDEDSPQLKDARRRIIEKEEQLVEAVAFDQVFVVGGALIAVLLAFMINVGMTGGISDGASRFRDVELPVNGVPPAVPHPSNQVYPDDDLVV 284
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2150.6581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAU9_ECTSI4.390e-9260.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C767_9STRA1.030e-1131.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2150contigL-elsbetiae_contig2150:19325..21656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006320.1
Exons3
Model size1530
Cds size924
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2150.6581.1prot_L-elsbetiae_contig2150.6581.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2150 19325..21050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815878.5540488-CDS-L-elsbetiae_contig2150:19324..200681622815878.5540488-CDS-L-elsbetiae_contig2150:19324..20068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 19325..20068 +
1691683163.5148675-CDS-L-elsbetiae_contig2150:19324..200681691683163.5148675-CDS-L-elsbetiae_contig2150:19324..20068Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 19325..20068 +
1622815878.5677178-CDS-L-elsbetiae_contig2150:20493..206091622815878.5677178-CDS-L-elsbetiae_contig2150:20493..20609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 20494..20609 +
1691683163.5257072-CDS-L-elsbetiae_contig2150:20493..206091691683163.5257072-CDS-L-elsbetiae_contig2150:20493..20609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 20494..20609 +
1622815878.5789185-CDS-L-elsbetiae_contig2150:20986..210501622815878.5789185-CDS-L-elsbetiae_contig2150:20986..21050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 20987..21050 +
1691683163.5362287-CDS-L-elsbetiae_contig2150:20986..210501691683163.5362287-CDS-L-elsbetiae_contig2150:20986..21050Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 20987..21050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815878.5891426-UTR-L-elsbetiae_contig2150:21050..216561622815878.5891426-UTR-L-elsbetiae_contig2150:21050..21656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2150 21051..21656 +
1691683163.5448587-UTR-L-elsbetiae_contig2150:21050..216561691683163.5448587-UTR-L-elsbetiae_contig2150:21050..21656Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2150 21051..21656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2150.6581.1

>prot_L-elsbetiae_contig2150.6581.1 ID=prot_L-elsbetiae_contig2150.6581.1|Name=mRNA_L-elsbetiae_contig2150.6581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=308bp
MRSIGMLQSHAGIGFHPGMRFQATAFFSSPLRSHMPLPRGGPWSSSPQET
AASTPIRRSRRRQPSCRSYSSLFDSSDGASGGDEEKADGLPEGAPSSSSD
GDGDSGGGGAAAVDGIGDVAEGNPEPRADEQITAPGATDPPVAAEGAAAA
AGEEQQGDWDKAWASTRQRMEKEKKAAPAFSGRKQVVASKNADGGYDFQE
ISADGSSRMQGDKGSGGFGFADSSQVEDGPGRVRRQEQEAVNLATTNQAF
AGLFALLLASLIFEVYVYMSGGITNGSTRFQGIGQPTTYDALPLPATPPP
PEDDLTV*
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mRNA from alignment at L-elsbetiae_contig2150:19325..21656+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2150.6581.1 ID=mRNA_L-elsbetiae_contig2150.6581.1|Name=mRNA_L-elsbetiae_contig2150.6581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2332bp|location=Sequence derived from alignment at L-elsbetiae_contig2150:19325..21656+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGATCAATAGGCATGTTGCAGTCTCATGCCGGAATAGGGTTCCACCC
CGGGATGCGGTTCCAAGCGACGGCCTTTTTCTCCTCCCCGCTCCGTTCGC
ACATGCCCCTCCCGCGCGGAGGCCCATGGTCATCATCACCACAAGAAACA
GCAGCATCAACGCCGATACGACGCTCTCGCCGACGTCAACCTTCCTGTCG
GTCGTACTCCTCGCTGTTCGACTCGTCTGACGGTGCCAGCGGTGGCGACG
AGGAAAAGGCGGACGGTTTGCCGGAAGGGGCCCCCTCCTCCTCCTCGGAC
GGCGATGGCGACAGCGGCGGTGGCGGCGCTGCTGCCGTCGACGGGATCGG
CGATGTCGCGGAGGGGAACCCGGAGCCTAGAGCCGATGAGCAAATCACCG
CTCCGGGAGCGACGGATCCTCCGGTGGCAGCGGAGGGCGCAGCAGCCGCG
GCGGGCGAGGAACAGCAAGGTGACTGGGACAAGGCCTGGGCTAGCACCCG
GCAAAGGATGGAGAAGGAAAAAAAGGCGGCGCCTGCCTTCTCGGGGAGGA
AACAGGTCGTGGCCTCGAAGAACGCGGACGGCGGTTACGACTTCCAGGAA
ATTTCCGCCGACGGGTCCAGCAGGATGCAGGGCGACAAGGGCAGCGGGGG
TTTCGGGTTTGCCGACAGCAGCCAGGTGGAAGATGGGCCCGGGAGGGTCC
GTAGGCAAGAGCAAGAGGCTGTTAACCTCGCCACGACGAATCAGGTGCGG
TTTAGCCCCGGTCCGAGCGGAATTTTAAGGACGAGCGACCTTCGAGCCGA
CAAGGAAACAACCACCCCCAAGGAGGGTTGAGTTGAGAGAGGGTGATATT
TTCGTATTTTCGAACGGGGTTTATCGACTGGTAAAGGGTGGCAGTTGTCG
AACGTCTACTGCCGGCTGGTCGCCCTGAGACCGCTGTCTTCGACGCTGCC
TACCTTTTCGCGCACGTATGTCTGTACCTACTGTACCTTCAGTCGTGATG
TCGGCCATGGCGACACGTTGCGCTTTTTGCGGTTGTGCACTTCATCCTTT
CGATGGTTGCGACCAGAAAAGCTTTTGTGCGATGTAATATTTCCCCTTCC
TCGCCCATACATACATACCACCATGGCGCCTGTTTCGCCATTCGTCGCCC
TCTCCCTATTCTGTGCCAGGCGTTCGCTGGTTTGTTCGCCCTTCTCCTAG
CGTCGCTGATCTTCGAGGTCTATGTCTATATGTCTGGAGGAATTACAAAC
GGTTCGACGAGGTTCCAGGGCATCGGGCAACCCACGTAAGCAGGTTTTGG
CCGTGCCAATAGCGCCACCGCCGGCGTTCGGTCGCGTTGCAATACGGCCC
ACGGGTGTTGTTTCTCGCCAAGTCCAAGCTCATCTTGTGGACGTCTCAGG
TTGCAGCTGCGCATTGAAGTGTTTTTACCAAGTGCGGTATGAGCTTGTGA
TCGTGCGGCCGGCGCGTTATCAGATTGCACCTGCTGTGGGTAATAGGGTA
GGATACAGTCAAGCGAGATGCACAGGCAGTTTCGTGTATATGTGATGATA
TAAAATTGCTCTCGCAAACGTTTCACGGTGTGAAGTAAAATACTCCCTCT
CTCGCCCTGCGCGCCCTTGTAATCCCCCGACTTGGGATGCGCTTCTGCGA
CTCCGTCTACAGCACCTACGACGCGTTACCGTTGCCGGCGACGCCACCCC
CACCTGAGGACGACCTGACCGTGTAACTGTGGCAAGAGACCGGCTGGCAT
GACAACGTCCACGCGCCGCCTCGGCCGCTGTTTCGAAACTAGGTCGCTTG
TGTCTCGGTTGAAGACCCAAGCAAATATTCCGCAAATGCGAGGTAGAAGC
GGCATGCGTTGACAGCGACCAAACGAGGTTTCAGCTTCCGCCGGTTCTGT
AGAGGCAGTTGCAACTGCCGCTCGAGGATGGCAGCAAAAGTTGCGGGTCT
CGAGAGCCATTCCACCAAGAACCTTGCCTGCACAGTAGAAGTAGCTGTTT
CCTGGAGAGCTTATTGTACAGTAGTTGAGCCACTAGCACCGCCGATGTAG
AACGCACGTCAAGCCCCATGTCTGGCTCTGTCATCGGGTTGGACAAGAGT
GCAAGCGCTCCAAAAGCGAGTTGAATTTTGGCGGAGGCCGTTTGGCTTGT
ATATATACATAACCTGTATGTTTTTTTGCCACAGTCGACCCTTTCATTGA
TTCTACGGGATACACGGCGCTACATCTGCAGGAGGGGGTCCAACCCCCTA
CCCCCCCCCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGAGTAGAAG
TGGAGGATGGGGGCCAGAGGGGCAGACGACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2150:19325..21656+

>mRNA_L-elsbetiae_contig2150.6581.1 ID=mRNA_L-elsbetiae_contig2150.6581.1|Name=mRNA_L-elsbetiae_contig2150.6581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1848bp|location=Sequence derived from alignment at L-elsbetiae_contig2150:19325..21656+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGATCAATAGGCATGTTGCAGTCTCATGCCGGAATAGGGTTCCACCC
CGGGATGCGGTTCCAAGCGACGGCCTTTTTCTCCTCCCCGCTCCGTTCGC
ACATGCCCCTCCCGCGCGGAGGCCCATGGTCATCATCACCACAAGAAACA
GCAGCATCAACGCCGATACGACGCTCTCGCCGACGTCAACCTTCCTGTCG
GTCGTACTCCTCGCTGTTCGACTCGTCTGACGGTGCCAGCGGTGGCGACG
AGGAAAAGGCGGACGGTTTGCCGGAAGGGGCCCCCTCCTCCTCCTCGGAC
GGCGATGGCGACAGCGGCGGTGGCGGCGCTGCTGCCGTCGACGGGATCGG
CGATGTCGCGGAGGGGAACCCGGAGCCTAGAGCCGATGAGCAAATCACCG
CTCCGGGAGCGACGGATCCTCCGGTGGCAGCGGAGGGCGCAGCAGCCGCG
GCGGGCGAGGAACAGCAAGGTGACTGGGACAAGGCCTGGGCTAGCACCCG
GCAAAGGATGGAGAAGGAAAAAAAGGCGGCGCCTGCCTTCTCGGGGAGGA
AACAGGTCGTGGCCTCGAAGAACGCGGACGGCGGTTACGACTTCCAGGAA
ATTTCCGCCGACGGGTCCAGCAGGATGCAGGGCGACAAGGGCAGCGGGGG
TTTCGGGTTTGCCGACAGCAGCCAGGTGGAAGATGGGCCCGGGAGGGTCC
GTAGGCAAGAGCAAGAGGCTGTTAACCTCGCCACGACGAATCAGATGAGA
TCAATAGGCATGTTGCAGTCTCATGCCGGAATAGGGTTCCACCCCGGGAT
GCGGTTCCAAGCGACGGCCTTTTTCTCCTCCCCGCTCCGTTCGCACATGC
CCCTCCCGCGCGGAGGCCCATGGTCATCATCACCACAAGAAACAGCAGCA
TCAACGCCGATACGACGCTCTCGCCGACGTCAACCTTCCTGTCGGTCGTA
CTCCTCGCTGTTCGACTCGTCTGACGGTGCCAGCGGTGGCGACGAGGAAA
AGGCGGACGGTTTGCCGGAAGGGGCCCCCTCCTCCTCCTCGGACGGCGAT
GGCGACAGCGGCGGTGGCGGCGCTGCTGCCGTCGACGGGATCGGCGATGT
CGCGGAGGGGAACCCGGAGCCTAGAGCCGATGAGCAAATCACCGCTCCGG
GAGCGACGGATCCTCCGGTGGCAGCGGAGGGCGCAGCAGCCGCGGCGGGC
GAGGAACAGCAAGGTGACTGGGACAAGGCCTGGGCTAGCACCCGGCAAAG
GATGGAGAAGGAAAAAAAGGCGGCGCCTGCCTTCTCGGGGAGGAAACAGG
TCGTGGCCTCGAAGAACGCGGACGGCGGTTACGACTTCCAGGAAATTTCC
GCCGACGGGTCCAGCAGGATGCAGGGCGACAAGGGCAGCGGGGGTTTCGG
GTTTGCCGACAGCAGCCAGGTGGAAGATGGGCCCGGGAGGGTCCGTAGGC
AAGAGCAAGAGGCTGTTAACCTCGCCACGACGAATCAGGCGTTCGCTGGT
TTGTTCGCCCTTCTCCTAGCGTCGCTGATCTTCGAGGTCTATGTCTATAT
GTCTGGAGGAATTACAAACGGTTCGACGAGGTTCCAGGGCATCGGGCAAC
CCACGCGTTCGCTGGTTTGTTCGCCCTTCTCCTAGCGTCGCTGATCTTCG
AGGTCTATGTCTATATGTCTGGAGGAATTACAAACGGTTCGACGAGGTTC
CAGGGCATCGGGCAACCCACCACCTACGACGCGTTACCGTTGCCGGCGAC
GCCACCCCCACCTGAGGACGACCTGACCGTGTAACACCTACGACGCGTTA
CCGTTGCCGGCGACGCCACCCCCACCTGAGGACGACCTGACCGTGTAA
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