mRNA_L-elsbetiae_contig2150.6578.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2150.6578.1
Unique NamemRNA_L-elsbetiae_contig2150.6578.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2150.6578.1 vs. uniprot
Match: D8LAU5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU5_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 2.990e-111
Identity = 153/176 (86.93%), Postives = 167/176 (94.89%), Query Frame = 1 
Query:    4 SSQQEKTKDFLDRLVTFVAGTYRNDKCIKLLSYSLSTVAQVIRYQNGGKDTRRSEGLSQLYLALSTARVVFRMQGTAEAVWEMKHVSGSEGWDDPRIRPLAWLQALTNVFYHPMEEVALAGSIAPKLFPVDEAWWWARSDWAWLAYCVLDMYMNVLKGKELRRREEGVRRKLRDCA 531
            SSQ E  KDFLDR VTFVAGTYRNDKCIKLL YSLST+AQ+IRY+NGGKDTRRSEGL+QLY ALSTARV+FRMQGTAEAVWE+KH+SG++GWDD RIRPLA LQALTNVFYHPMEEVALAG IAPKLFPVD+AWWWARSDWAWLA+C++DMYMNVLKG+ELRRREEGVRRKLRDCA
Sbjct:    3 SSQSEGAKDFLDRFVTFVAGTYRNDKCIKLLGYSLSTIAQIIRYRNGGKDTRRSEGLNQLYGALSTARVIFRMQGTAEAVWELKHLSGADGWDDVRIRPLARLQALTNVFYHPMEEVALAGGIAPKLFPVDQAWWWARSDWAWLAFCIIDMYMNVLKGRELRRREEGVRRKLRDCA 178
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BLAST of mRNA_L-elsbetiae_contig2150.6578.1 vs. uniprot
Match: A0A835YVI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVI8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 3.060e-32
Identity = 65/173 (37.57%), Postives = 101/173 (58.38%), Query Frame = 1 
Query:   13 QEKTKDFLDRLVTFVAGTYRNDKCIKLLSYSLSTVAQVIRYQNGGKDTRRSEGLSQLYLALSTARVVFRMQGTAEAVWEMKHVSGSEGWDDPRIRPLAWLQALTNVFYHPMEEVALAGSIAPKLFPVDEAWWWARSDWAWLAYCVLDMYMNVLKGKELRRREEGVRRKLRDCA 531
            Q+  +  LD+ V + +  + +DK +K   Y+ S++A V+R  NGGK T  +EGL +LY  +   R + R  GT +A+  +++ S    W D RIR L   QA T + YHPME V     I PKL P++  WW+A++ + W+AY V D+Y+++LK KEL+R +     +L   A
Sbjct:    4 QKGGRTLLDKYVGYTSAYFYHDKVLKTGGYTCSSLAAVLRVLNGGKSTTLTEGLDKLYGEVGMTRCLTRFIGTTDALEAIRNDSWVGDWKDRRIRNLVKFQAWTMLIYHPMEHVGYLAYIVPKLVPLNGDWWFAKACYWWVAYVVADLYISLLKFKELKRSDAAAALQLEQAA 176
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BLAST of mRNA_L-elsbetiae_contig2150.6578.1 vs. uniprot
Match: A0A7S0M254_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M254_9CRYP)

HSP 1 Score: 70.9 bits (172), Expect = 3.460e-12
Identity = 52/162 (32.10%), Postives = 80/162 (49.38%), Query Frame = 1 
Query:    1 MSSQQEKTKDFLDRLVTFVAGTYRNDKCIKLLSYSLSTVAQVIRYQNGGKDTRRSEGLSQLYLALSTARVVFRMQGTAEAV----WEMKHVSGSEGWDDPRIRPLAWLQALTNVFYHPMEEVALAGSIAPKLFPVDEAWWWARSDWAWLAYCVLDMYMNVLK 474
            MSS        L ++V F +  +  DK +K   Y+   +A     Q  G  +  +EGL QL   LS  R+  R+ G    V      M + S   GW+D RI+   W Q++T + Y+P+E +A AG IAP+LFPV+       S   W+ + ++D+Y   L+
Sbjct:    1 MSSVNSAPVQLLMQVVDFHSSVFGWDKTMKNFCYAFG-LASCAASQIYGPKSALAEGLKQLGSNLSMYRMCTRIGGGPFGVPPELENMINHSWYGGWEDKRIKWCVWWQSVTMLGYYPLENLAWAGYIAPRLFPVNADKLCQASCVFWVLWILIDIYATRLR 161
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BLAST of mRNA_L-elsbetiae_contig2150.6578.1 vs. uniprot
Match: L1IT62_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IT62_GUITC)

HSP 1 Score: 65.1 bits (157), Expect = 1.700e-9
Identity = 49/145 (33.79%), Postives = 72/145 (49.66%), Query Frame = 1 
Query:   76 DKCIKLLSYSLSTVAQVIRYQNGGKDTRRSEGLSQLYLALSTARVVFRMQGTAEAV-WEMKHVSGSE---GWDDPRIRPLAWLQALTNVFYHPMEEVALAGSIAPKLFPVDEAWWWARSDWAWLAYCVLDMYMNVLKGKELRRRE 498
            DK +K+ SY L  VAQ   ++         E L       S  RV  R+ G+   +  E+ ++  S    GW D  IR    LQ+ T + Y+P+E    AG+IAPKLFP+D A     S   W+ + V+D+Y    + +EL+R E
Sbjct:   15 DKAMKIASYLLPLVAQTCPHRL----QTLKEALKLFGSHFSMYRVTTRLGGSPFGLPSELDNIINSSWVGGWKDNVIRRCVILQSYTMLGYYPLEHAVWAGTIAPKLFPLDVATLSRLSCVFWVLWIVIDIYATHRRWQELKRME 155
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2150.6578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LAU5_ECTSI2.990e-11186.93Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVI8_9STRA3.060e-3237.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0M254_9CRYP3.460e-1232.10Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
L1IT62_GUITC1.700e-933.79Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2150contigL-elsbetiae_contig2150:96..2618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.7
Seed ortholog evalue3.8e-19
Seed eggNOG ortholog112098.XP_008607189.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peroxisomal biogenesis factor 11 (PEX11)
EggNOG OGs2CXQZ@1,2RZ56@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPeroxisomal biogenesis factor 11
Ec32 orthologEc-27_006350.1
Exons5
Model size546
Cds size546
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2150.6578.1prot_L-elsbetiae_contig2150.6578.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2150 96..2618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815878.218023-CDS-L-elsbetiae_contig2150:95..2091622815878.218023-CDS-L-elsbetiae_contig2150:95..209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 96..209 -
1691683163.2474937-CDS-L-elsbetiae_contig2150:95..2091691683163.2474937-CDS-L-elsbetiae_contig2150:95..209Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 96..209 -
1622815878.2310998-CDS-L-elsbetiae_contig2150:924..10481622815878.2310998-CDS-L-elsbetiae_contig2150:924..1048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 925..1048 -
1691683163.2659838-CDS-L-elsbetiae_contig2150:924..10481691683163.2659838-CDS-L-elsbetiae_contig2150:924..1048Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 925..1048 -
1622815878.2428095-CDS-L-elsbetiae_contig2150:1586..17251622815878.2428095-CDS-L-elsbetiae_contig2150:1586..1725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 1587..1725 -
1691683163.2747548-CDS-L-elsbetiae_contig2150:1586..17251691683163.2747548-CDS-L-elsbetiae_contig2150:1586..1725Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 1587..1725 -
1622815878.2553039-CDS-L-elsbetiae_contig2150:1913..19841622815878.2553039-CDS-L-elsbetiae_contig2150:1913..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 1914..1984 -
1691683163.2833219-CDS-L-elsbetiae_contig2150:1913..19841691683163.2833219-CDS-L-elsbetiae_contig2150:1913..1984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 1914..1984 -
1622815878.2646139-CDS-L-elsbetiae_contig2150:2520..26181622815878.2646139-CDS-L-elsbetiae_contig2150:2520..2618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 2521..2618 -
1691683163.2916408-CDS-L-elsbetiae_contig2150:2520..26181691683163.2916408-CDS-L-elsbetiae_contig2150:2520..2618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2150 2521..2618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2150.6578.1

>prot_L-elsbetiae_contig2150.6578.1 ID=prot_L-elsbetiae_contig2150.6578.1|Name=mRNA_L-elsbetiae_contig2150.6578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=182bp
MSSQQEKTKDFLDRLVTFVAGTYRNDKCIKLLSYSLSTVAQVIRYQNGGK
DTRRSEGLSQLYLALSTARVVFRMQGTAEAVWEMKHVSGSEGWDDPRIRP
LAWLQALTNVFYHPMEEVALAGSIAPKLFPVDEAWWWARSDWAWLAYCVL
DMYMNVLKGKELRRREEGVRRKLRDCAGERNA
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mRNA from alignment at L-elsbetiae_contig2150:96..2618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2150.6578.1 ID=mRNA_L-elsbetiae_contig2150.6578.1|Name=mRNA_L-elsbetiae_contig2150.6578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2523bp|location=Sequence derived from alignment at L-elsbetiae_contig2150:96..2618- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCCCAGCAGGAGAAAACGAAGGACTTCCTTGATCGGTTGGTCAC
CTTCGTCGCTGGCACATACCGAAACGATAAATGCATCAAGCTGCTGAGGT
AGGTGTGTAATCGATCTTTTTGATTTCGCTCCAGTGCTTTTGCTCAGGTG
ATCCACAGCAGTACCGTGCAGCTATGTATCTATCATACATCAATTTCCAA
GAGGGGTGATCGAGGAACACATGTCTGGAACGATGAGAGTACACCAGATC
GCGAGCATGCCTGTACCTCGCTGTCTTCCTTCTCTACCAATATGTAGTGC
AGAGGGTTATGCCAGCTGCGCATCAAATACTGATCAGGACGAAATGGATC
TCTACTTCGCCCTTTTCGGAATATATTTGACGACCGCGTGACGCGCTTGC
AATTAGCCCGCACAGCAGCTCCTCTTGCGAGCGCGTGATTTGACAGCAAT
GGCAAGACTAAAGGTAGAAAATGTGCTGGTGGGGGGCGTCCCCTCCTAGC
CCGACTCTTTTTTATACGCCTCACAACCCGTTGCAAACGCTCAAAGCTTT
GCACAATACAGATGCCTATAATGGTCGCCTGTTGTTGCTCTCTCCGTTTT
GGTCTCTCCTGCAAACCTCCTTGCTCTCTGGCAGTTACTCCTTGTCCACA
GTCGCGCAAGTTATTCGCTACCAGAACGGCGGGAAGGATACTCGGCGATC
AGAAGGTAAGCTGAAGAGGGGCCCTTCAAGGTCGACGACCTTTCCGTGTT
TGCTTTCAGCAGCCCCATTGACAACCATTAACTCACAGCAAGAGTGCCCT
CGCCCTAATTACCCCGCAAAACCAACCTACAGCCTCCGCGCGCCCTCTCC
TATGTGGTTTTCCTTGTGCTCCGACCCTCCGCTACCTCTGTAGGTTTAAG
CCAGTTGTACCTGGCCCTTTCAACAGCCCGCGTGGTGTTTCGGATGCAAG
GTACTGCGGAGGCCGTGTGGGAGATGAAGCACGTGTCGGGGTCGGAAGGG
TGGGATGATCCCAGGATACGACCGTTGGCCTGGTGAGCCGTCAGCCTCCT
ACACTATTGCTGCTGTGCATGTACATACGCTGCACACCGTTTCGGACTTT
GCGAAAGGGGTCGCCATTAGTGTACTTGTTCGCAACCGGAGAATGATAAC
CATCGTACGTTAGTCTAGTATGACCTTGGTTGGATAGTCTATACAATTAC
AACGAACCGAGACAACAGCAGTATCTAGTTAACTTTTGAAGCTCCAGACC
AGTCTTAGTCTTTCTGACACGACCCAAAAATGGGTTTGTAAATTTCCAAC
CGACCGAATAGTGGACGTATCACACATCGTGGGCAAAACGTCCACTGGCC
GTCCGTTGTGGAACGACCTTGTGCGTCGAGGAACTCAACTAAGTTGTGTC
GTTTTTTCCTCTTGAGAGACACAAACGATGTCGAGCTCTACGGAATCAGA
GAAGCGATAGGGCTCGGGGTACAATATTTATTTTGTGGGCATTTGCGGCC
CCTTCTTTCAAGTTCAAAACGGACCAGTCAACCATCAACGACATTTCCGT
TGCAACTCTTCGGTGGACAGGCTGCAAGCGCTGACCAATGTGTTTTACCA
CCCGATGGAGGAGGTTGCTCTGGCGGGGAGCATCGCGCCGAAGCTGTTTC
CGGTGGATGAGGCGTGGTGGTGGGCTAGATCGGACTGGGCATGGGTGAGA
GCGAATGCCCGTTGTTTTTTGCGACCGGGCGTCGAGCGTCAACAACAAGG
AAACACCCTATCGGTTATTCTGTTGGTAGTTCCTTTTCAGCCTCCTTGGT
GGTGCTGGCGGCGGCGGCGGAGATGATAGCGGACTCCGTTGTCGTTGTCG
TTATCGCTGTTGTTGTCGCAGTTTCGGAGGGCTTGTGCTAGCCTGAAAAT
CGGCAAGGCAGGCGTGATGTAACAAGCGTGTGTAGAGTTGCCGATGGCAC
ACCATTTACATGTCCTAGCAGTAGAAGAACCACCTTCACTCGCCATGCTT
GTCTCCATCGCATGCAGACCATACAGTTGTAAGTTTAGTCGTGGCGTGTT
CCTCAAGGCCGCCCTCCCGAAAGACGACCGACAAAACTCGTGTAACTAGA
AAGTGGAGAACTTTCAGATTGTCTGCCTGCCAAGTTGACAGACAAAATAG
CCCAGTCGTTCAGGGTAGTGTCCGGAATGGCCTTGCGTGGTGCAGGCGAG
GAATCATTATCCGCCATACTTTTGTATTTGCGGTTGCATCTTTTCCTCCT
ACTGGCCTACTCCACAGCCTATCTTCTTTCCGGCCGGCCGTACACACGAC
GCTCGCGGCCGGCCCTCCTCTGTACTCGTTTCTTGTCTCAATACATATAT
GTGCGCGGAGTATATACTTATTTGCGTCTTGTTTTTTCCCTTTGTTGCGT
TCACTGCAGCTCGCATACTGCGTCCTCGATATGTACATGAACGTGCTGAA
GGGGAAAGAGCTCCGCAGGCGAGAGGAGGGAGTGCGGAGAAAGCTCCGGG
ATTGTGCCGGTGAGCGCAACGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2150:96..2618-

>mRNA_L-elsbetiae_contig2150.6578.1 ID=mRNA_L-elsbetiae_contig2150.6578.1|Name=mRNA_L-elsbetiae_contig2150.6578.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1092bp|location=Sequence derived from alignment at L-elsbetiae_contig2150:96..2618- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCCCAGCAGGAGAAAACGAAGGACTTCCTTGATCGGTTGGTCAC
CTTCGTCGCTGGCACATACCGAAACGATAAATGCATCAAGCTGCTGAGAT
GTCGTCCCAGCAGGAGAAAACGAAGGACTTCCTTGATCGGTTGGTCACCT
TCGTCGCTGGCACATACCGAAACGATAAATGCATCAAGCTGCTGAGTTAC
TCCTTGTCCACAGTCGCGCAAGTTATTCGCTACCAGAACGGCGGGAAGGA
TACTCGGCGATCAGAAGTTACTCCTTGTCCACAGTCGCGCAAGTTATTCG
CTACCAGAACGGCGGGAAGGATACTCGGCGATCAGAAGGTTTAAGCCAGT
TGTACCTGGCCCTTTCAACAGCCCGCGTGGTGTTTCGGATGCAAGGTACT
GCGGAGGCCGTGTGGGAGATGAAGCACGTGTCGGGGTCGGAAGGGTGGGA
TGATCCCAGGATACGACCGTTGGCCTGGTTTAAGCCAGTTGTACCTGGCC
CTTTCAACAGCCCGCGTGGTGTTTCGGATGCAAGGTACTGCGGAGGCCGT
GTGGGAGATGAAGCACGTGTCGGGGTCGGAAGGGTGGGATGATCCCAGGA
TACGACCGTTGGCCTGGCTGCAAGCGCTGACCAATGTGTTTTACCACCCG
ATGGAGGAGGTTGCTCTGGCGGGGAGCATCGCGCCGAAGCTGTTTCCGGT
GGATGAGGCGTGGTGGTGGGCTAGATCGGACTGGGCATGGGCTGCAAGCG
CTGACCAATGTGTTTTACCACCCGATGGAGGAGGTTGCTCTGGCGGGGAG
CATCGCGCCGAAGCTGTTTCCGGTGGATGAGGCGTGGTGGTGGGCTAGAT
CGGACTGGGCATGGCTCGCATACTGCGTCCTCGATATGTACATGAACGTG
CTGAAGGGGAAAGAGCTCCGCAGGCGAGAGGAGGGAGTGCGGAGAAAGCT
CCGGGATTGTGCCGGTGAGCGCAACGCACTCGCATACTGCGTCCTCGATA
TGTACATGAACGTGCTGAAGGGGAAAGAGCTCCGCAGGCGAGAGGAGGGA
GTGCGGAGAAAGCTCCGGGATTGTGCCGGTGAGCGCAACGCA
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