mRNA_L-elsbetiae_contig2149.6572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2149.6572.1
Unique NamemRNA_L-elsbetiae_contig2149.6572.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2149.6572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2149contigL-elsbetiae_contig2149:16728..19072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-02_002290.1
Exons4
Model size442
Cds size438
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2149.6572.1prot_L-elsbetiae_contig2149.6572.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2149 16728..19070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815877.380443-CDS-L-elsbetiae_contig2149:16727..168111622815877.380443-CDS-L-elsbetiae_contig2149:16727..16811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2149 16728..16811 +
1691683162.6282067-CDS-L-elsbetiae_contig2149:16727..168111691683162.6282067-CDS-L-elsbetiae_contig2149:16727..16811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2149 16728..16811 +
1622815877.3919659-CDS-L-elsbetiae_contig2149:17901..180451622815877.3919659-CDS-L-elsbetiae_contig2149:17901..18045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2149 17902..18045 +
1691683162.640877-CDS-L-elsbetiae_contig2149:17901..180451691683162.640877-CDS-L-elsbetiae_contig2149:17901..18045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2149 17902..18045 +
1622815877.4079654-CDS-L-elsbetiae_contig2149:18498..186631622815877.4079654-CDS-L-elsbetiae_contig2149:18498..18663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2149 18499..18663 +
1691683162.6596754-CDS-L-elsbetiae_contig2149:18498..186631691683162.6596754-CDS-L-elsbetiae_contig2149:18498..18663Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2149 18499..18663 +
1622815877.4185805-CDS-L-elsbetiae_contig2149:19025..190701622815877.4185805-CDS-L-elsbetiae_contig2149:19025..19070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2149 19026..19070 +
1691683162.6708632-CDS-L-elsbetiae_contig2149:19025..190701691683162.6708632-CDS-L-elsbetiae_contig2149:19025..19070Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2149 19026..19070 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2149.6572.1

>prot_L-elsbetiae_contig2149.6572.1 ID=prot_L-elsbetiae_contig2149.6572.1|Name=mRNA_L-elsbetiae_contig2149.6572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=146bp
ETQSTCRRRQLRRTGGSTGGDDTCSSQEVCVAHSCVYLESNFYTACDCDS
NGQKRAEWGPDWWKEFTHCEDFSCHHSSVLVTLNESFALGSSATESASLP
PENAALVPINPTVVVTGQLEQAWAMDYTCIQPQTGENGSVWCGEWS
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mRNA from alignment at L-elsbetiae_contig2149:16728..19072+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2149.6572.1 ID=mRNA_L-elsbetiae_contig2149.6572.1|Name=mRNA_L-elsbetiae_contig2149.6572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2345bp|location=Sequence derived from alignment at L-elsbetiae_contig2149:16728..19072+ (Laminarionema elsbetiae ELsaHSoW15)
GAGACCCAGAGTACTTGCCGTCGGAGGCAACTCAGAAGAACTGGCGGAAG
TACTGGAGGCGACGATACCTGCTCGTCGCAAGAGGTAGGGTTTATCGAAA
GTGCTTTATGAATCTCATGCTTCAATTTGAGTCAGTAAACCGCACACTGC
TCGTATGACATAGACTATGGTATGGTCCGTCCAGGACAATTTGTCCATTC
CTCCGACCTGCATTTGGTACACTTTTCTCGGGGGTGGGGTAGTTTTCCGG
AATTTCAAAGACACCGGCAAACGCCCTGTCTCCAGGCGCGTCTCCCTATG
GAAAGCGATTTATTTTTTTTATTTGTCTCTTTGTAATCACCAAATAACCA
TAAAAGTTTGTTCGCTTTTTCCTGGGGCGTCTTTTTTTCAGAGCACAATT
CTGAGACCGGATTCGGACAGCTCTCGGAATTCGCCAGACCTAAATGTTTT
CCGATTTCGATTTGGATTAAAATCAAAGAAGTTATCGGCGAAAAACTGGA
TTGTACAAGCCATTTTGTTCGCTTTTTCCTGCGACTATCAACCATACGAT
TTTGAAATAGACCGCGGCACACGATTCCTCTCGAAATTCCCCAGAACTAA
ATGTTTTCCGATTTTTGAAAAAACGATAGTTTGTGAGATATACAGATTTT
TGTCCAAAACCCAGATTTTTTCCCAGTCTTTAACTTTTTTTTAGGGGTGG
CTCAGCAATTACTTGAAATTATAGGGGTGTCCAACATGATGAAGAAAAAA
CAATTGTGCGCATTGTTGTGGGGATCACTACCGTGGCTGAAATTCTGTCT
AACTCGATTTTTTTCAAAAGTTATCGCGAAAAAGCCATAATGGACAACTG
GTCCTGGACAGACCTACTAACCTACGTTTCTCACCGACCGCGTATCTCCT
CAGTAGGCATCAACTCACCTTGTTCATTCACTCCATTAGCATACGTTGTT
CGTGAACATATCTACAGCGATGCAATATTAATATTCCCCGTGTTGGCCAA
CATCGCCATCTCTCCAGCTCTCCCACCTTCTTGCCCTCCGCACCCCCTTC
ACTTCGAACACCCCCTATTTATATCTCGCGTAAACACCTTTTCGAGACTG
TCCATGGCAACGCCTCAATGCAGAACCAGAGTCGATGTAACTTTTCAATG
CACGAACATTGGCCATCAAACCAGGTGTGCGTGGCGCACTCCTGCGTGTA
CCTCGAGTCGAACTTTTACACGGCGTGTGACTGCGACAGCAACGGCCAGA
AGCGGGCTGAATGGGGGCCCGACTGGTGGAAAGAATTCACACACTGCGAA
GATTTCTCGTGCCATCACGTAAGACGAAAGGGAGGCACGGCTGGGTGGGA
GACAAAAATAACCAGCCACTCCCTTCATCATTTCCCGCGGGTGTAGCCGA
GGTCACGTAGGCACATCGCACGTCGGAAAAGCTCCGGTTCTGCCCAACAG
TGCGGGGATATCGAGGTATTCTGGCTTTATTCCAATTGTTTTTCAATTTG
ACCTCCGGCGAGTGGCGAAAAACATCCTGCGCTTGTTCAAGAATTGCGAT
GCCCGTCGCCGAGAGAGCCATGAAGTTGTCCTAGGCCAGGTAGATCCCCA
GCACACGTTACCACACTCGAGCAAATCGAACGGCCTCTTCGCTACCGTTC
ATGCTGATGATGGGAACCCTAATGACGCTTCTACGCCGGCAAAGTTTGTC
TCCGCCTAAACTCTTCCCCGTTCTTATCTCTGCTGCGGCTCGTCCCTTGC
TGCCGTTTCCCGCCGCACCAGTCGAGCGTTCTTGTGACACTGAACGAGAG
CTTTGCGCTGGGATCATCGGCGACAGAGTCTGCGTCGCTACCCCCCGAAA
ATGCTGCTCTGGTTCCCATCAACCCCACCGTCGTCGTAACCGGGCAGCTC
GAACAAGCGTGGGCTATGGACTACACCTGCATACAGGTGCCCCCTGCCAG
AGTTTGATTCTTCCTTTTCAACCTTCTCTCCTGCCTTGCCTGCTAAACTT
CAATCGCTCCGCTGAATACCGCGAGGGCGCCTGCAACCCTTGTTCCAGCA
GCGTCTTGGTCGCCTGGTCGACGTTCCGTGAGCTTCCAAGAGATGTATGC
CTATGCTCGGTGCTCGCGCCCCTCCAACGAACTCGATATAGATACAGGGA
GCGCCAATCCCCGAACGGCGGCTTCGTCGCAGCCGTTTTCTGCCCGGCTT
GGTTCTGACTTCACGATTGATTGTGTACACGGAGTGTACCTGCATGGTCA
GTGTGGCCGAAGGGGTCCCTGACGCTGGAAGCGTTTTCCCCCTCTCAGCC
TCAGACAGGGGAGAACGGTAGCGTGTGGTGTGGCGAGTGGAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2149:16728..19072+

>mRNA_L-elsbetiae_contig2149.6572.1 ID=mRNA_L-elsbetiae_contig2149.6572.1|Name=mRNA_L-elsbetiae_contig2149.6572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=876bp|location=Sequence derived from alignment at L-elsbetiae_contig2149:16728..19072+ (Laminarionema elsbetiae ELsaHSoW15)
GAGACCCAGAGTACTTGCCGTCGGAGGCAACTCAGAAGAACTGGCGGAAG
TACTGGAGGCGACGATACCTGCTCGTCGCAAGAGGAGACCCAGAGTACTT
GCCGTCGGAGGCAACTCAGAAGAACTGGCGGAAGTACTGGAGGCGACGAT
ACCTGCTCGTCGCAAGAGGTGTGCGTGGCGCACTCCTGCGTGTACCTCGA
GTCGAACTTTTACACGGCGTGTGACTGCGACAGCAACGGCCAGAAGCGGG
CTGAATGGGGGCCCGACTGGTGGAAAGAATTCACACACTGCGAAGATTTC
TCGTGCCATCACGTGTGCGTGGCGCACTCCTGCGTGTACCTCGAGTCGAA
CTTTTACACGGCGTGTGACTGCGACAGCAACGGCCAGAAGCGGGCTGAAT
GGGGGCCCGACTGGTGGAAAGAATTCACACACTGCGAAGATTTCTCGTGC
CATCACTCGAGCGTTCTTGTGACACTGAACGAGAGCTTTGCGCTGGGATC
ATCGGCGACAGAGTCTGCGTCGCTACCCCCCGAAAATGCTGCTCTGGTTC
CCATCAACCCCACCGTCGTCGTAACCGGGCAGCTCGAACAAGCGTGGGCT
ATGGACTACACCTGCATACAGTCGAGCGTTCTTGTGACACTGAACGAGAG
CTTTGCGCTGGGATCATCGGCGACAGAGTCTGCGTCGCTACCCCCCGAAA
ATGCTGCTCTGGTTCCCATCAACCCCACCGTCGTCGTAACCGGGCAGCTC
GAACAAGCGTGGGCTATGGACTACACCTGCATACAGCCTCAGACAGGGGA
GAACGGTAGCGTGTGGTGTGGCGAGTGGAGCCCTCAGACAGGGGAGAACG
GTAGCGTGTGGTGTGGCGAGTGGAGC
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