mRNA_L-elsbetiae_contig21472.6570.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21472.6570.1
Unique NamemRNA_L-elsbetiae_contig21472.6570.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.520e-9
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  166 MPSKCGHQGCTKRPSYGVEGTNKAELCCQHAREGMV 273
            +  +CGH GCTKRPSYG +G+ KAELC QHA +GMV
Sbjct:    5 VSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 8.610e-9
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  172 SKCGHQGCTKRPSYGVEGTNKAELCCQHAREGMVDVVSK 288
            S+CGH+ CTKRP+YGV G+ K E C QHAR+GMV+V +K
Sbjct:   62 SQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNK 100
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BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.990e-7
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:  166 MPSKCGHQGCTKRPSYGVEGTNKAELCCQHAREGMVDVVS 285
            +  +CGH GCTK+PS+G  G+ +AE CC HA++ MV V S
Sbjct:    5 VDKRCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDMVIVHS 44
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BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Match: A0A6H5KRV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.280e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:  178 CGHQGCTKRPSYGVEGTNKAELCCQHAREGMVDV 279
            CGH GC KRPS+G +G+ KAE C QHA +GMV+V
Sbjct:   37 CGHPGCIKRPSFGNDGSTKAEFCSQHAWKGMVNV 70
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BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 8.570e-6
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:  175 KCGHQGCTKRPSYGVEGTNKAELCCQHAREGM 270
            +C H GCTKRPS+G +G+ K E C QHA +GM
Sbjct:    8 RCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
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BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Match: D7FY22_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY22_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 2.580e-5
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 1 
Query:  178 CGHQGCTKRPSYGVEGTNKAELCCQHAREGMVDVVSK 288
            C   GCT RPSYG++G+ KAE C +H++ GM +V  K
Sbjct:   31 CQEHGCTARPSYGIDGSKKAEFCSKHSKPGMTNVTKK 67
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BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Match: D7FSL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL7_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 7.090e-5
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:  175 KCGHQGCTKRPSYGVEGTNKAELCCQHAREGM 270
            +CGH GCTKRPS+G  G+ + E C QHA++ M
Sbjct:    8 RCGHPGCTKRPSFGTTGSKRPEFCSQHAKQDM 39
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BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Match: A0A6H5JV67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV67_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 8.800e-5
Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:  178 CGHQGCTKRPSYGVEGTNKAELCCQHAREGMV 273
            C  +GCTKRPSYG+EG+ K E C +H ++GMV
Sbjct:   33 CQAKGCTKRPSYGMEGSKKQEYCAEHKKDGMV 64
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21472.6570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI3.520e-966.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE8.610e-964.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW94_9PHAE1.990e-752.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRV0_9PHAE3.280e-664.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMB1_ECTSI8.570e-659.38EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FY22_ECTSI2.580e-551.35EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FSL7_ECTSI7.090e-556.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV67_9PHAE8.800e-559.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21472contigL-elsbetiae_contig21472:1036..1367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815877.246018-CDS-L-elsbetiae_contig21472:1035..13651622815877.246018-CDS-L-elsbetiae_contig21472:1035..1365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21472 1036..1365 +
1691683162.5300207-CDS-L-elsbetiae_contig21472:1035..13651691683162.5300207-CDS-L-elsbetiae_contig21472:1035..1365Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21472 1036..1365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21472.6570.1prot_L-elsbetiae_contig21472.6570.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21472 1036..1365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21472.6570.1

>prot_L-elsbetiae_contig21472.6570.1 ID=prot_L-elsbetiae_contig21472.6570.1|Name=mRNA_L-elsbetiae_contig21472.6570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
DPSWSGGPICECTAYITSKVPHSQATSEQQTAEKGACEQQNRRDGPTGKE
KRKKRMPSKCGHQGCTKRPSYGVEGTNKAELCCQHAREGMVDVVSKRCGH
RGCNTKPSYG
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mRNA from alignment at L-elsbetiae_contig21472:1036..1367+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21472.6570.1 ID=mRNA_L-elsbetiae_contig21472.6570.1|Name=mRNA_L-elsbetiae_contig21472.6570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=332bp|location=Sequence derived from alignment at L-elsbetiae_contig21472:1036..1367+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCCAGCTGGAGTGGCGGGCCAATCTGCGAGTGCACTGCCTACATCAC
ATCCAAAGTTCCGCACTCGCAAGCCACCTCTGAACAGCAAACCGCAGAGA
AAGGTGCCTGTGAACAGCAAAACCGCAGAGACGGGCCCACCGGAAAGGAA
AAAAGAAAAAAGAGGATGCCTAGCAAATGCGGGCATCAAGGGTGCACCAA
ACGGCCGTCGTACGGTGTCGAAGGCACCAACAAGGCTGAGCTCTGCTGTC
AGCACGCCAGGGAGGGGATGGTGGACGTGGTCAGCAAGAGGTGTGGGCAT
CGAGGGTGCAACACAAAACCGTCGTACGGCGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21472:1036..1367+

>mRNA_L-elsbetiae_contig21472.6570.1 ID=mRNA_L-elsbetiae_contig21472.6570.1|Name=mRNA_L-elsbetiae_contig21472.6570.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig21472:1036..1367+ (Laminarionema elsbetiae ELsaHSoW15)
GACCCCAGCTGGAGTGGCGGGCCAATCTGCGAGTGCACTGCCTACATCAC
ATCCAAAGTTCCGCACTCGCAAGCCACCTCTGAACAGCAAACCGCAGAGA
AAGGTGCCTGTGAACAGCAAAACCGCAGAGACGGGCCCACCGGAAAGGAA
AAAAGAAAAAAGAGGATGCCTAGCAAATGCGGGCATCAAGGGTGCACCAA
ACGGCCGTCGTACGGTGTCGAAGGCACCAACAAGGCTGAGCTCTGCTGTC
AGCACGCCAGGGAGGGGATGGTGGACGTGGTCAGCAAGAGGTGTGGGCAT
CGAGGGTGCAACACAAAACCGTCGTACGGCGACCCCAGCTGGAGTGGCGG
GCCAATCTGCGAGTGCACTGCCTACATCACATCCAAAGTTCCGCACTCGC
AAGCCACCTCTGAACAGCAAACCGCAGAGAAAGGTGCCTGTGAACAGCAA
AACCGCAGAGACGGGCCCACCGGAAAGGAAAAAAGAAAAAAGAGGATGCC
TAGCAAATGCGGGCATCAAGGGTGCACCAAACGGCCGTCGTACGGTGTCG
AAGGCACCAACAAGGCTGAGCTCTGCTGTCAGCACGCCAGGGAGGGGATG
GTGGACGTGGTCAGCAAGAGGTGTGGGCATCGAGGGTGCAACACAAAACC
GTCGTACGGC
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