mRNA_L-elsbetiae_contig21470.6569.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21470.6569.1
Unique NamemRNA_L-elsbetiae_contig21470.6569.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: D7FZB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB4_ECTSI)

HSP 1 Score: 154 bits (388), Expect = 8.210e-46
Identity = 74/82 (90.24%), Postives = 80/82 (97.56%), Query Frame = 1
Query:    1 PDLSPEEKQRNFDVGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDKE 246
            P+LS EEKQRNFD+GRRYNSKMATSHN+RMADLT KIKL+DDAI+HLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDK+
Sbjct:   88 PELSAEEKQRNFDIGRRYNSKMATSHNERMADLTTKIKLRDDAIAHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDKK 169          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A6T7YBG7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T7YBG7_9CRYP)

HSP 1 Score: 51.6 bits (122), Expect = 3.230e-6
Identity = 25/69 (36.23%), Postives = 42/69 (60.87%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDKE 246
            + + +  +     N  +A++  KI+L+D A++ LP  LQ   R  D  P P++R +AT+TPPIPGF ++
Sbjct:   69 IAKEFTRQSFRRENKFLANMQQKIRLRDIAVAALPAELQAEGRTNDMEPYPMDRHMATHTPPIPGFREQ 137          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A445ACG8_ARAHY (Uncharacterized protein n=3 Tax=Arachis TaxID=3817 RepID=A0A445ACG8_ARAHY)

HSP 1 Score: 52.8 bits (125), Expect = 3.430e-6
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGF 237
            + + Y+  +   H +R A  T  ++LK +AI  LPE L+ AA  PD  P P+NR +AT TPPI G+
Sbjct:  159 LAKEYSRVLMRKHRERQAKETTLLRLKKEAIEALPEGLREAALVPDLTPFPVNRFMATLTPPIEGY 224          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A022R072_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022R072_ERYGU)

HSP 1 Score: 52.4 bits (124), Expect = 4.820e-6
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGF 237
            + + Y+  +   H  R A  +M +K K +AI  LPE L+ AA  PD  P P+NR +AT TPPI G+
Sbjct:  162 LAKEYSRVLMRKHRARQASESMLLKCKKEAIDALPEELKEAALVPDLTPFPINRFMATLTPPIEGY 227          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A2Z7AUQ9_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AUQ9_9LAMI)

HSP 1 Score: 51.6 bits (122), Expect = 9.150e-6
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGF 237
            + + Y+  +   H  R A  +M ++LK +AI  LPE L+ AA  PD +P P+NR +AT TPPI G+
Sbjct:  161 LAKEYSRVLMRKHRVRQAAESMLLRLKKEAIEALPEHLKAAALVPDLSPFPINRFMATLTPPIEGY 226          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A1S4BHU9_TOBAC (uncharacterized protein LOC107808434 n=12 Tax=Solanaceae TaxID=4070 RepID=A0A1S4BHU9_TOBAC)

HSP 1 Score: 51.2 bits (121), Expect = 1.260e-5
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGF 237
            + + Y+  +   H  R A  T  ++LK +AI  LPE L+ AA  PD  P P+NR +AT TPPI G+
Sbjct:  160 LAKEYSRVLMRKHRQRQAAETTLLRLKKEAIEALPENLKAAALVPDLTPFPVNRFMATLTPPIEGY 225          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A6A6MZK8_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MZK8_HEVBR)

HSP 1 Score: 50.8 bits (120), Expect = 1.430e-5
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGFDKEAGL 255
            + + Y+  +   H  R A  +  ++LK +AI  LPE L+ AA  PD  P P+NR +AT TPPI G+ ++  +
Sbjct:  129 LAKEYSRVLMRKHRARQAAESTLLRLKKEAIEALPEKLKQAALVPDLTPFPVNRFMATLTPPIEGYIEKTAI 200          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A1U8DSZ5_CAPAN (uncharacterized protein LOC107839242 n=4 Tax=Capsicum TaxID=4071 RepID=A0A1U8DSZ5_CAPAN)

HSP 1 Score: 50.8 bits (120), Expect = 1.710e-5
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGF 237
            + + Y+  +   H  R A  T  ++LK +AI  LPE L+ AA  PD  P P+NR +AT TPPI G+
Sbjct:  157 LAKAYSRVLMRKHRQRQAAETTLLRLKKEAIEALPENLKTAALVPDYTPFPVNRFMATLTPPIEGY 222          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A328DHD2_9ASTE (Uncharacterized protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A328DHD2_9ASTE)

HSP 1 Score: 50.8 bits (120), Expect = 2.060e-5
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGF 237
            + + Y+  +   H +R A  +  ++LK +AI  LPE L+ AA  PD  P P+NR +AT TPPI G+
Sbjct:  162 LAKEYSRVLMRKHRERQAAESTLLRLKKEAIEALPENLKAAALVPDLTPFPMNRFMATLTPPIEGY 227          
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Match: A0A7I8K627_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K627_SPIIN)

HSP 1 Score: 50.4 bits (119), Expect = 2.550e-5
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1
Query:   40 VGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPELLQHAARQPDRNPPPLNRRVATYTPPIPGF 237
            + R Y+  +   H  R A  +  ++LK +AI  LPE L+ AA  PD  P P+NR +AT TPPI G+
Sbjct:  175 LAREYSRSLMRRHRARQAAESTLLRLKKEAIEALPEHLKAAAMIPDLTPFPVNRFMATLTPPIDGY 240          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21470.6569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FZB4_ECTSI8.210e-4690.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6T7YBG7_9CRYP3.230e-636.23Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A445ACG8_ARAHY3.430e-642.42Uncharacterized protein n=3 Tax=Arachis TaxID=3817... [more]
A0A022R072_ERYGU4.820e-642.42Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
A0A2Z7AUQ9_9LAMI9.150e-642.42Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A1S4BHU9_TOBAC1.260e-542.42uncharacterized protein LOC107808434 n=12 Tax=Sola... [more]
A0A6A6MZK8_HEVBR1.430e-537.50Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
A0A1U8DSZ5_CAPAN1.710e-542.42uncharacterized protein LOC107839242 n=4 Tax=Capsi... [more]
A0A328DHD2_9ASTE2.060e-540.91Uncharacterized protein n=3 Tax=Cuscuta sect. Clei... [more]
A0A7I8K627_SPIIN2.550e-542.42Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21470contigL-elsbetiae_contig21470:1354..1608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.2e-36
Seed eggNOG ortholog2880.D7FZB4
Hectar predicted targeting categoryother localisation
EggNOG OGs2D19J@1,2S4VG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRibosomal protein L28/L40, mitochondrial
Ec32 orthologEc-07_001600.1
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815877.2090507-CDS-L-elsbetiae_contig21470:1353..16081622815877.2090507-CDS-L-elsbetiae_contig21470:1353..1608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21470 1354..1608 +
1691683162.5166714-CDS-L-elsbetiae_contig21470:1353..16081691683162.5166714-CDS-L-elsbetiae_contig21470:1353..1608Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21470 1354..1608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21470.6569.1prot_L-elsbetiae_contig21470.6569.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21470 1354..1608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21470.6569.1

>prot_L-elsbetiae_contig21470.6569.1 ID=prot_L-elsbetiae_contig21470.6569.1|Name=mRNA_L-elsbetiae_contig21470.6569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
PDLSPEEKQRNFDVGRRYNSKMATSHNDRMADLTMKIKLKDDAISHLPEL
LQHAARQPDRNPPPLNRRVATYTPPIPGFDKEAGL
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mRNA from alignment at L-elsbetiae_contig21470:1354..1608+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21470.6569.1 ID=mRNA_L-elsbetiae_contig21470.6569.1|Name=mRNA_L-elsbetiae_contig21470.6569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=255bp|location=Sequence derived from alignment at L-elsbetiae_contig21470:1354..1608+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGACCTCTCCCCGGAAGAGAAGCAGCGAAACTTCGACGTCGGGCGGCG GTACAACAGCAAGATGGCCACGAGCCACAACGATAGGATGGCGGACCTGA CGATGAAGATCAAGCTCAAGGACGACGCCATCTCGCACCTCCCGGAGCTC CTGCAGCACGCGGCGCGGCAGCCGGACAGGAACCCGCCGCCGCTGAACCG GAGGGTGGCGACCTACACGCCGCCCATCCCCGGGTTCGACAAGGAGGCCG GCCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21470:1354..1608+

>mRNA_L-elsbetiae_contig21470.6569.1 ID=mRNA_L-elsbetiae_contig21470.6569.1|Name=mRNA_L-elsbetiae_contig21470.6569.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig21470:1354..1608+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGACCTCTCCCCGGAAGAGAAGCAGCGAAACTTCGACGTCGGGCGGCG
GTACAACAGCAAGATGGCCACGAGCCACAACGATAGGATGGCGGACCTGA
CGATGAAGATCAAGCTCAAGGACGACGCCATCTCGCACCTCCCGGAGCTC
CTGCAGCACGCGGCGCGGCAGCCGGACAGGAACCCGCCGCCGCTGAACCG
GAGGGTGGCGACCTACACGCCGCCCATCCCCGGGTTCGACAAGGAGGCCG
GCCTGCCCGACCTCTCCCCGGAAGAGAAGCAGCGAAACTTCGACGTCGGG
CGGCGGTACAACAGCAAGATGGCCACGAGCCACAACGATAGGATGGCGGA
CCTGACGATGAAGATCAAGCTCAAGGACGACGCCATCTCGCACCTCCCGG
AGCTCCTGCAGCACGCGGCGCGGCAGCCGGACAGGAACCCGCCGCCGCTG
AACCGGAGGGTGGCGACCTACACGCCGCCCATCCCCGGGTTCGACAAGGA
GGCCGGCCTG
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