mRNA_L-elsbetiae_contig2147.6568.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2147.6568.1
Unique NamemRNA_L-elsbetiae_contig2147.6568.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2147.6568.1 vs. uniprot
Match: Q8QN73_ESV1K (EsV-1-217 n=2 Tax=root TaxID=1 RepID=Q8QN73_ESV1K)

HSP 1 Score: 103 bits (257), Expect = 3.900e-23
Identity = 106/209 (50.72%), Postives = 136/209 (65.07%), Query Frame = 1 
Query:   13 ADVAANRKRRAAILKKRREDGQLKPLLDSKRKQQRAEVAKLKAENLAIKKRAQKEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEKKKNELCKDISLVDLHQRMQKAVPEIREMKNFTSKDYSERKQVAISIWSDLRKHLSYCNKAQFESKRKKKIKKAPRAKQAHL---VMKNRSADYLVPDWIVDEVDPAAYKRA 630
            ++  ANRKRRA ILK+RR DG++K ++ S  + +RA  AKLKA+ LA ++RAQ+EK          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX E +K + C D +L+ + Q M  AVP   EM+  TS  +S R++   S W+ LRK+L  C+K  FES +KKK  KAPR         V KNR+    +PD I   +D AAYK+A
Sbjct:    4 SEATANRKRRAEILKQRRRDGKVKQVMSSTLRNKRAAGAKLKADKLAQRERAQREKREMRAEIKAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRKKDGCTDTNLMAIRQAMMAAVPTALEMRGLTSAAFSRRRETMSSTWTSLRKYLVACHKKNFESAKKKKGAKAPRNPSKGSGAPVFKNRAV--FLPD-IGQVIDEAAYKKA 209
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2147.6568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QN73_ESV1K3.900e-2350.72EsV-1-217 n=2 Tax=root TaxID=1 RepID=Q8QN73_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2147contigL-elsbetiae_contig2147:16207..16953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size747
Cds size747
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815877.1745484-CDS-L-elsbetiae_contig2147:16206..169531622815877.1745484-CDS-L-elsbetiae_contig2147:16206..16953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2147 16207..16953 -
1691683162.5047555-CDS-L-elsbetiae_contig2147:16206..169531691683162.5047555-CDS-L-elsbetiae_contig2147:16206..16953Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2147 16207..16953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2147.6568.1prot_L-elsbetiae_contig2147.6568.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2147 16207..16953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2147.6568.1

>prot_L-elsbetiae_contig2147.6568.1 ID=prot_L-elsbetiae_contig2147.6568.1|Name=mRNA_L-elsbetiae_contig2147.6568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MNSTADVAANRKRRAAILKKRREDGQLKPLLDSKRKQQRAEVAKLKAENL
AIKKRAQKEKKEAAAAIKAGKKEINEQNKLKRELEKELRRNNTLERKAGI
EKKKNELCKDISLVDLHQRMQKAVPEIREMKNFTSKDYSERKQVAISIWS
DLRKHLSYCNKAQFESKRKKKIKKAPRAKQAHLVMKNRSADYLVPDWIVD
EVDPAAYKRANQNFVRRSPRPKPSVPVTPRPNNKKKKRVAPTLVRPIA*
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mRNA from alignment at L-elsbetiae_contig2147:16207..16953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2147.6568.1 ID=mRNA_L-elsbetiae_contig2147.6568.1|Name=mRNA_L-elsbetiae_contig2147.6568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=747bp|location=Sequence derived from alignment at L-elsbetiae_contig2147:16207..16953- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTCAACCGCTGACGTGGCCGCCAATCGCAAGAGGAGAGCTGCGAT
TTTGAAAAAAAGACGTGAAGATGGTCAATTAAAACCACTGCTGGATTCAA
AGCGAAAACAACAGAGGGCTGAGGTGGCAAAGCTGAAAGCAGAAAACCTT
GCGATAAAGAAGCGTGCACAAAAAGAGAAGAAAGAAGCGGCAGCCGCAAT
CAAAGCAGGTAAAAAGGAAATAAATGAACAAAATAAGCTCAAAAGGGAGT
TGGAGAAAGAATTGCGGAGGAACAACACTTTGGAGCGAAAGGCAGGCATT
GAGAAGAAGAAAAATGAGTTATGCAAGGATATCTCGCTGGTTGATTTACA
CCAAAGAATGCAGAAGGCAGTGCCCGAAATCAGAGAGATGAAAAATTTCA
CGAGCAAAGATTACTCGGAGCGCAAACAGGTGGCGATCTCTATCTGGTCG
GATCTTAGAAAGCACCTCTCCTATTGCAATAAAGCACAGTTTGAATCCAA
AAGGAAGAAAAAAATCAAGAAAGCACCACGAGCAAAACAAGCACACCTTG
TAATGAAAAATAGATCCGCGGATTACCTTGTTCCCGATTGGATTGTGGAC
GAGGTCGATCCCGCAGCATACAAAAGGGCAAACCAAAATTTTGTTAGACG
TAGCCCTAGACCTAAACCGTCGGTACCCGTGACCCCAAGACCGAACAATA
AAAAAAAGAAGAGAGTAGCACCCACTTTGGTTAGACCCATCGCTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2147:16207..16953-

>mRNA_L-elsbetiae_contig2147.6568.1 ID=mRNA_L-elsbetiae_contig2147.6568.1|Name=mRNA_L-elsbetiae_contig2147.6568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig2147:16207..16953- (Laminarionema elsbetiae ELsaHSoW15)
ATGAATTCAACCGCTGACGTGGCCGCCAATCGCAAGAGGAGAGCTGCGAT
TTTGAAAAAAAGACGTGAAGATGGTCAATTAAAACCACTGCTGGATTCAA
AGCGAAAACAACAGAGGGCTGAGGTGGCAAAGCTGAAAGCAGAAAACCTT
GCGATAAAGAAGCGTGCACAAAAAGAGAAGAAAGAAGCGGCAGCCGCAAT
CAAAGCAGGTAAAAAGGAAATAAATGAACAAAATAAGCTCAAAAGGGAGT
TGGAGAAAGAATTGCGGAGGAACAACACTTTGGAGCGAAAGGCAGGCATT
GAGAAGAAGAAAAATGAGTTATGCAAGGATATCTCGCTGGTTGATTTACA
CCAAAGAATGCAGAAGGCAGTGCCCGAAATCAGAGAGATGAAAAATTTCA
CGAGCAAAGATTACTCGGAGCGCAAACAGGTGGCGATCTCTATCTGGTCG
GATCTTAGAAAGCACCTCTCCTATTGCAATAAAGCACAGTTTGAATCCAA
AAGGAAGAAAAAAATCAAGAAAGCACCACGAGCAAAACAAGCACACCTTG
TAATGAAAAATAGATCCGCGGATTACCTTGTTCCCGATTGGATTGTGGAC
GAGGTCGATCCCGCAGCATACAAAAGGGCAAACCAAAATTTTGTTAGACG
TAGCCCTAGACCTAAACCGTCGGTACCCGTGACCCCAAGACCGAACAATA
AAAAAAAGAAGAGAGTAGCACCCACTTTGGTTAGACCCATCGCTTGAATG
AATTCAACCGCTGACGTGGCCGCCAATCGCAAGAGGAGAGCTGCGATTTT
GAAAAAAAGACGTGAAGATGGTCAATTAAAACCACTGCTGGATTCAAAGC
GAAAACAACAGAGGGCTGAGGTGGCAAAGCTGAAAGCAGAAAACCTTGCG
ATAAAGAAGCGTGCACAAAAAGAGAAGAAAGAAGCGGCAGCCGCAATCAA
AGCAGGTAAAAAGGAAATAAATGAACAAAATAAGCTCAAAAGGGAGTTGG
AGAAAGAATTGCGGAGGAACAACACTTTGGAGCGAAAGGCAGGCATTGAG
AAGAAGAAAAATGAGTTATGCAAGGATATCTCGCTGGTTGATTTACACCA
AAGAATGCAGAAGGCAGTGCCCGAAATCAGAGAGATGAAAAATTTCACGA
GCAAAGATTACTCGGAGCGCAAACAGGTGGCGATCTCTATCTGGTCGGAT
CTTAGAAAGCACCTCTCCTATTGCAATAAAGCACAGTTTGAATCCAAAAG
GAAGAAAAAAATCAAGAAAGCACCACGAGCAAAACAAGCACACCTTGTAA
TGAAAAATAGATCCGCGGATTACCTTGTTCCCGATTGGATTGTGGACGAG
GTCGATCCCGCAGCATACAAAAGGGCAAACCAAAATTTTGTTAGACGTAG
CCCTAGACCTAAACCGTCGGTACCCGTGACCCCAAGACCGAACAATAAAA
AAAAGAAGAGAGTAGCACCCACTTTGGTTAGACCCATCGCTTGA
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