mRNA_L-elsbetiae_contig2147.6566.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2147.6566.1
Unique NamemRNA_L-elsbetiae_contig2147.6566.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2147.6566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2147contigL-elsbetiae_contig2147:8921..9381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815877.1282146-UTR-L-elsbetiae_contig2147:8920..90781622815877.1282146-UTR-L-elsbetiae_contig2147:8920..9078Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2147 8921..9078 +
1691683162.478719-UTR-L-elsbetiae_contig2147:8920..90781691683162.478719-UTR-L-elsbetiae_contig2147:8920..9078Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2147 8921..9078 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815877.1423388-CDS-L-elsbetiae_contig2147:9078..93811622815877.1423388-CDS-L-elsbetiae_contig2147:9078..9381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2147 9079..9381 +
1691683162.4900167-CDS-L-elsbetiae_contig2147:9078..93811691683162.4900167-CDS-L-elsbetiae_contig2147:9078..9381Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2147 9079..9381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2147.6566.1prot_L-elsbetiae_contig2147.6566.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2147 9079..9381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2147.6566.1

>prot_L-elsbetiae_contig2147.6566.1 ID=prot_L-elsbetiae_contig2147.6566.1|Name=mRNA_L-elsbetiae_contig2147.6566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
MNTPDIVSQILSFCPQNAYIYIAPVNKTWRKAHGLCRKTSVCQSVASCGR
TQSILPTLKTDEVLNSRAFYHASKMGHIDVLGLLLANKKPLALYTCTAGA
M
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mRNA from alignment at L-elsbetiae_contig2147:8921..9381+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2147.6566.1 ID=mRNA_L-elsbetiae_contig2147.6566.1|Name=mRNA_L-elsbetiae_contig2147.6566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=461bp|location=Sequence derived from alignment at L-elsbetiae_contig2147:8921..9381+ (Laminarionema elsbetiae ELsaHSoW15)
GTATAGTCTTGTAAGGATGGTGAAAGTGGAAAGAAAGATTGGGATAGTCT
TGAAAGATCCTTGAAAGAGACCAAGATAAAAAGAGTTGCGTTTCACCAGC
TCATTTGAATTCACCTGGCCTGTTTCAAAAAATATATGTTGTACACACAG
TACATTACATGAACACTCCCGACATTGTCTCACAAATCCTCTCCTTCTGT
CCCCAAAATGCATATATATATATCGCACCCGTCAACAAAACATGGAGAAA
AGCACATGGTCTTTGCAGGAAAACATCCGTGTGCCAATCCGTCGCGTCAT
GTGGCAGAACACAAAGCATCCTACCAACACTGAAAACCGACGAGGTTTTG
AACAGCAGAGCATTTTACCACGCATCGAAAATGGGACATATAGACGTTCT
TGGCCTCCTCCTGGCAAACAAAAAACCCTTGGCTCTCTACACGTGCACAG
CGGGGGCTATG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2147:8921..9381+

>mRNA_L-elsbetiae_contig2147.6566.1 ID=mRNA_L-elsbetiae_contig2147.6566.1|Name=mRNA_L-elsbetiae_contig2147.6566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig2147:8921..9381+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACACTCCCGACATTGTCTCACAAATCCTCTCCTTCTGTCCCCAAAA
TGCATATATATATATCGCACCCGTCAACAAAACATGGAGAAAAGCACATG
GTCTTTGCAGGAAAACATCCGTGTGCCAATCCGTCGCGTCATGTGGCAGA
ACACAAAGCATCCTACCAACACTGAAAACCGACGAGGTTTTGAACAGCAG
AGCATTTTACCACGCATCGAAAATGGGACATATAGACGTTCTTGGCCTCC
TCCTGGCAAACAAAAAACCCTTGGCTCTCTACACGTGCACAGCGGGGGCT
ATGATGAACACTCCCGACATTGTCTCACAAATCCTCTCCTTCTGTCCCCA
AAATGCATATATATATATCGCACCCGTCAACAAAACATGGAGAAAAGCAC
ATGGTCTTTGCAGGAAAACATCCGTGTGCCAATCCGTCGCGTCATGTGGC
AGAACACAAAGCATCCTACCAACACTGAAAACCGACGAGGTTTTGAACAG
CAGAGCATTTTACCACGCATCGAAAATGGGACATATAGACGTTCTTGGCC
TCCTCCTGGCAAACAAAAAACCCTTGGCTCTCTACACGTGCACAGCGGGG
GCTATG
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