mRNA_L-elsbetiae_contig2146.6560.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2146.6560.1
Unique NamemRNA_L-elsbetiae_contig2146.6560.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: D7FM74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM74_ECTSI)

HSP 1 Score: 404 bits (1038), Expect = 1.340e-138
Identity = 192/231 (83.12%), Postives = 208/231 (90.04%), Query Frame = 1
Query:    1 LSSPRSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKCSKMTEFLVLEGEA--HDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWLPPATEES 687
            LS  RSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVV YDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAP S+DGCVLWVKLRQHGGPSR+HTRLDT SM W+ T+ PGVKAK LYSHP+HVESMRIEKW+AGAK+ER+C KMTEFLVLEGEA  HD     ASETF +RSWLR+PAG T+S+TS  GC+VFVKEGEWLPP++  +
Sbjct:    5 LSVDRSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERECQKMTEFLVLEGEAEAHD-----ASETFTKRSWLRLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNT 230          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A1Y5TZ85_9PROT (ChrR Cupin-like domain protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TZ85_9PROT)

HSP 1 Score: 226 bits (576), Expect = 7.500e-69
Identity = 113/220 (51.36%), Postives = 150/220 (68.18%), Query Frame = 1
Query:   22 RVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKC-SKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWLPPAT 678
            RV++ T+ M W  SPSPSVWRKR+ L GP E+GRVT++V Y+  S+F  H HPDGEEILVLEG++ D +GD+PAG+Y+LNPEGFRHAP S DGC+L+VKLRQ GGP R H  +DT ++ WQ    PG   K LY+ P+ +E MR+ + + GA++ R    +  E LVLEG   D+ G     T+ + SWLR P G   S+ S  G  ++VK+G  LPPA+
Sbjct:   12 RVAMDTAAMAWQASPSPSVWRKRLDLSGPAEAGRVTALVRYEPGSRFPAHEHPDGEEILVLEGTFSDEHGDYPAGSYLLNPEGFRHAPFSVDGCLLFVKLRQFGGPGRAHHAIDTAALDWQPGNMPGRSVKPLYAAPDGIEQMRLVRLDPGAQVPRHVHDRGEEVLVLEGAIADEDG-----TYGKGSWLRFPDGSAHSVRSEHGAVIYVKQGH-LPPAS 225          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A7Y2ICR3_9GAMM (Anti-sigma factor n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2ICR3_9GAMM)

HSP 1 Score: 212 bits (540), Expect = 2.320e-63
Identity = 107/214 (50.00%), Postives = 139/214 (64.95%), Query Frame = 1
Query:   19 VRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKCSKM-TEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEG 657
            VR  + T  MEW  SPS +VWRKRV L G  ESG+VTS+V Y   S F  H HP+GEEILVLEG + D +GD PAGTY+LNPEGFRHAP S+ GC+L+VKLRQ  GP REH  +DT+   WQ T+  GV  K+LY    + ++ R+E+WEA +       +   EF VL+GE  DD G      +   +WLR+PAGG  S  +  GC++++K+G
Sbjct:   14 VRAFMDTQAMEWTASPSGTVWRKRVHLVGAPESGQVTSIVRYQPESSFPAHDHPEGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPFSQQGCLLFVKLRQFPGPDREHHVIDTRDREWQPTQRKGVWQKSLYRQAGYSDTTRLERWEAESTAGTISHEQGAEFFVLDGEFEDDEG-----VYPAGTWLRIPAGGMHSPGTSRGCQLYIKQG 222          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A523JHQ7_9DELT (Anti-sigma factor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JHQ7_9DELT)

HSP 1 Score: 207 bits (527), Expect = 1.860e-61
Identity = 107/212 (50.47%), Postives = 138/212 (65.09%), Query Frame = 1
Query:   25 VSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKCSKM-TEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEG 657
            V +HTS MEW PSPS SV RKRV L G  E+G+VTSVV Y  NS F  H HP+GEEILVL+G + D +GD PAG+Y+LNPEGFRHAP SK GC+++VKLRQ+GG  R H  L T  +PW+     G++ K LYS     + MR+E+W  GA       +   E LVL G   D+ G     ++++ SWLR+PAG T +  S  GCE+++K G
Sbjct:   15 VVMHTSSMEWLPSPSGSVLRKRVHLVGGAEAGQVTSVVRYLENSSFAAHDHPEGEEILVLDGVFSDEHGDWPAGSYLLNPEGFRHAPFSKPGCLIFVKLRQYGGRGRRHVALCTHELPWKSGPHAGIELKLLYSEAGFPDEMRLERWAPGATPGTVSYEGGAEILVLRGRLEDEQG-----SYDKLSWLRLPAGATHTPVSPNGCELYLKTG 221          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A7C2JUM9_9GAMM (Anti-sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JUM9_9GAMM)

HSP 1 Score: 206 bits (525), Expect = 4.060e-61
Identity = 104/213 (48.83%), Postives = 139/213 (65.26%), Query Frame = 1
Query:   22 RVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIER-KCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEG 657
            RV+V T+ M W PSPS +V+RKRV L GP ESG+VTSVV Y   + F+ H HPDGEEILVLEG + D +GD PAGTY+LNPEGFRH+P S+DGCVL+VKLRQ  G +REH  L T ++ W+     GV  + LY+     ++MR+E+W   A++   +     E  VLEG   D+ G      F + +WLR+P G   S ++  GC +++KEG
Sbjct:   17 RVAVDTAAMAWTPSPSRTVFRKRVHLVGPPESGQVTSVVRYGPGATFHTHAHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHSPFSRDGCVLFVKLRQFPGRTREHVALRTDTLEWRPAARAGVAVRPLYAQAGFADTMRLERWPPEARLRPIEYPSGAELFVLEGSFRDEDG-----EFARGAWLRLPPGAAHSPSTAEGCVLYIKEG 224          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A536YCZ3_9PROT (Anti-sigma factor n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YCZ3_9PROT)

HSP 1 Score: 205 bits (522), Expect = 1.420e-60
Identity = 109/213 (51.17%), Postives = 132/213 (61.97%), Query Frame = 1
Query:   16 SVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKCSKM-TEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVK 651
            SVR    T+ MEWAPSPS SVWRKRV L GP ESG+VTSVV Y   S+F  H HP GEEILVLEG + D +GD PAGT++LNPEGFRHAP S+ GCVL+VKLRQ  G  R H  +DT  + W+ +  P V  KALY      + MR+E+WE  A +     +   E  VL GE  D+ G      +    WLR+PAG      S GGC V++K
Sbjct:   10 SVRAVADTTRMEWAPSPSRSVWRKRVHLVGPPESGQVTSVVRYGPRSRFPAHDHPQGEEILVLEGVFSDEHGDWPAGTFLLNPEGFRHAPFSEPGCVLFVKLRQFPGRERSHIVIDTHKLAWEPSSLPAVAYKALYQQTGFSDVMRLERWEPQADLGVVSYEQGAELFVLGGEFVDEAG-----AYSAGCWLRLPAGSEHHPRSAGGCTVYIK 217          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A534ASB5_9GAMM (Anti-sigma factor n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534ASB5_9GAMM)

HSP 1 Score: 203 bits (517), Expect = 4.940e-60
Identity = 105/218 (48.17%), Postives = 143/218 (65.60%), Query Frame = 1
Query:   16 SVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKI-ERKCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWL 666
            S RV V T  + W PSPS +VWRKR+ L GP E+G+VTS+V Y  +S+F  H HPDGEEILVLEG + D +GD PAGTY+LNPEGFRHAP S+ GC L+VKLRQ  G  R H  +DT+++ WQ  E  G   K LY+   + +SMR+E+W +G++  E K S+  E  VL G   D+ G     +++  +WLR+P        + GGCE+++KEG ++
Sbjct:   10 SARVVVDTKTLPWTPSPSGTVWRKRLHLVGPPEAGQVTSLVRYQPHSEFPLHDHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPYSRGGCHLFVKLRQFPGKDRRHVVIDTQNLSWQTRE--GRAIKLLYAQVGYADSMRLERWPSGSRPGELKYSQGAELWVLGGAFEDERG-----SYDAHTWLRLPPQARHCPRTSGGCELYIKEGGFV 220          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: UPI000369B847 (cupin domain-containing protein n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI000369B847)

HSP 1 Score: 203 bits (517), Expect = 6.160e-60
Identity = 110/227 (48.46%), Postives = 140/227 (61.67%), Query Frame = 1
Query:   22 RVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKI-ERKCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWLP----PATEES 687
            RV VHT    W PSP   V RKR+ L G  ESG+VTS+V Y A ++F  H HPDGEEILVL+G + D  GD PAG+Y+LNP GF+HAPSSK GC+L+VKLRQ+ G  R H  L  K++ WQ    PG++ K LY  PEH E+MR+E+W AG     R+     E LV+ G  +D+ G      ++   WLR+PAG T    S  GC +++KEG        P TEES
Sbjct:   11 RVHVHTDAEPWVPSPGGEVLRKRLHLVGMPESGQVTSLVRYPAGAEFPLHPHPDGEEILVLDGVFTDQEGDWPAGSYLLNPAGFQHAPSSKTGCLLFVKLRQYAG-MRHHISLAAKAISWQPL-APGIELKMLYKEPEHAETMRLERWAAGTLAGPRRYPGGVEILVIHGGFNDEQG-----DYQSHDWLRLPAGSTHRPASKTGCTLYIKEGGLAALRSVPLTEES 230          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: UPI000688EB27 (cupin domain-containing protein n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI000688EB27)

HSP 1 Score: 203 bits (516), Expect = 9.250e-60
Identity = 105/218 (48.17%), Postives = 134/218 (61.47%), Query Frame = 1
Query:   16 SVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKI-ERKCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWL 666
            S RV +  S M+W PSPS +VWRKR  L G  ESG+VTS+V YD  ++F  H HP GEEILVLEG + D  GD PAG+Y+LNPEGF HAP S +GC+L VKLRQ  G  R H  LDT  + WQ +E  GV  K LY+  ++ E MR+E W   +   E +  +  EF V+ GE  D+ G      +   SWLR+PAG   +  S  GCE+++K G  L
Sbjct:    9 SKRVQLDASSMDWQPSPSGTVWRKRFHLVGEGESGQVTSLVRYDPGARFPSHPHPGGEEILVLEGIFSDQQGDWPAGSYLLNPEGFEHAPGSAEGCLLLVKLRQFAGQERRHLALDTAELAWQPSEIKGVLVKQLYADNDYPEQMRLEHWAPDSHCGELEYPEGAEFFVISGEFEDEQG-----RYPAGSWLRLPAGSRHNPRSALGCELYIKTGHLL 221          
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A2N5Y5A5_9GAMM (Anti-sigma factor n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y5A5_9GAMM)

HSP 1 Score: 202 bits (513), Expect = 2.360e-59
Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1
Query:   22 RVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIER-KCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEG 657
            RV V T  M+W PSP+  V RKR+ L G  ESG+VTS+V Y+  + F  H HP GEEILVLEG + D +GD PAG+Y+LNPEGF+HAP S++GC+L+VKLRQ+ G  REH  +DT + PWQ +       K LY+   + + MR+E W+  A I +    +  E LVL+G   DD G     ++    WLR+PAGG +  TS   CE+++KEG
Sbjct:   15 RVVVDTQSMDWTPSPAGQVLRKRLHLVGQAESGQVTSLVRYEPGASFPAHDHPQGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSREGCLLFVKLRQYPGADREHVAIDTTARPWQPSVRKNTSWKKLYAQEPYTDFMRLESWDTPAAIGQINFPQGAEILVLKGSFADDEG-----SYRTHCWLRIPAGGAIHPTSNEYCELYIKEG 222          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM74_ECTSI1.340e-13883.12Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y5TZ85_9PROT7.500e-6951.36ChrR Cupin-like domain protein n=1 Tax=Oceanibacte... [more]
A0A7Y2ICR3_9GAMM2.320e-6350.00Anti-sigma factor n=1 Tax=Woeseiaceae bacterium Ta... [more]
A0A523JHQ7_9DELT1.860e-6150.47Anti-sigma factor n=1 Tax=Deltaproteobacteria bact... [more]
A0A7C2JUM9_9GAMM4.060e-6148.83Anti-sigma factor n=1 Tax=Gammaproteobacteria bact... [more]
A0A536YCZ3_9PROT1.420e-6051.17Anti-sigma factor n=3 Tax=Betaproteobacteria bacte... [more]
A0A534ASB5_9GAMM4.940e-6048.17Anti-sigma factor n=2 Tax=Gammaproteobacteria bact... [more]
UPI000369B8476.160e-6048.46cupin domain-containing protein n=1 Tax=Marinobact... [more]
UPI000688EB279.250e-6048.17cupin domain-containing protein n=1 Tax=Marinobact... [more]
A0A2N5Y5A5_9GAMM2.360e-5947.42Anti-sigma factor n=1 Tax=Kineobactrum sediminis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2146contigL-elsbetiae_contig2146:2298..6455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score386.3
Seed ortholog evalue9.1e-105
Seed eggNOG ortholog2880.D7FM74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ChrR Cupin-like domain
EggNOG OGs2SA9Z@2759,COG3806@1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-16_004810.1
Exons6
Model size1230
Cds size645
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2146.6560.1prot_L-elsbetiae_contig2146.6560.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2146 2343..5915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.599753-UTR-L-elsbetiae_contig2146:2297..23421622815876.599753-UTR-L-elsbetiae_contig2146:2297..2342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2146 2298..2342 +
1691683162.1232307-UTR-L-elsbetiae_contig2146:2297..23421691683162.1232307-UTR-L-elsbetiae_contig2146:2297..2342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2146 2298..2342 +
1622815876.6897116-UTR-L-elsbetiae_contig2146:5915..64551622815876.6897116-UTR-L-elsbetiae_contig2146:5915..6455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2146 5916..6455 +
1691683162.1899414-UTR-L-elsbetiae_contig2146:5915..64551691683162.1899414-UTR-L-elsbetiae_contig2146:5915..6455Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2146 5916..6455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.6133225-CDS-L-elsbetiae_contig2146:2342..24321622815876.6133225-CDS-L-elsbetiae_contig2146:2342..2432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 2343..2432 +
1691683162.1351557-CDS-L-elsbetiae_contig2146:2342..24321691683162.1351557-CDS-L-elsbetiae_contig2146:2342..2432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 2343..2432 +
1622815876.6249664-CDS-L-elsbetiae_contig2146:2950..30351622815876.6249664-CDS-L-elsbetiae_contig2146:2950..3035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 2951..3035 +
1691683162.1443677-CDS-L-elsbetiae_contig2146:2950..30351691683162.1443677-CDS-L-elsbetiae_contig2146:2950..3035Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 2951..3035 +
1622815876.6378634-CDS-L-elsbetiae_contig2146:3992..40391622815876.6378634-CDS-L-elsbetiae_contig2146:3992..4039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 3993..4039 +
1691683162.1527555-CDS-L-elsbetiae_contig2146:3992..40391691683162.1527555-CDS-L-elsbetiae_contig2146:3992..4039Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 3993..4039 +
1622815876.6526158-CDS-L-elsbetiae_contig2146:4641..47991622815876.6526158-CDS-L-elsbetiae_contig2146:4641..4799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 4642..4799 +
1691683162.1611712-CDS-L-elsbetiae_contig2146:4641..47991691683162.1611712-CDS-L-elsbetiae_contig2146:4641..4799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 4642..4799 +
1622815876.6671803-CDS-L-elsbetiae_contig2146:5338..54691622815876.6671803-CDS-L-elsbetiae_contig2146:5338..5469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 5339..5469 +
1691683162.1722214-CDS-L-elsbetiae_contig2146:5338..54691691683162.1722214-CDS-L-elsbetiae_contig2146:5338..5469Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 5339..5469 +
1622815876.6785805-CDS-L-elsbetiae_contig2146:5781..59151622815876.6785805-CDS-L-elsbetiae_contig2146:5781..5915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 5782..5915 +
1691683162.181449-CDS-L-elsbetiae_contig2146:5781..59151691683162.181449-CDS-L-elsbetiae_contig2146:5781..5915Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2146 5782..5915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2146.6560.1

>prot_L-elsbetiae_contig2146.6560.1 ID=prot_L-elsbetiae_contig2146.6560.1|Name=mRNA_L-elsbetiae_contig2146.6560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp
MEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEI
LVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSR
EHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKC
SKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVF
VKEGEWLPPATEES*
back to top

mRNA from alignment at L-elsbetiae_contig2146:2298..6455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2146.6560.1 ID=mRNA_L-elsbetiae_contig2146.6560.1|Name=mRNA_L-elsbetiae_contig2146.6560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4158bp|location=Sequence derived from alignment at L-elsbetiae_contig2146:2298..6455+ (Laminarionema elsbetiae ELsaHSoW15)
CTGTCTTCCCCCAGGAGCGTGCGCGTGAGCGTGCATACGAGTGGTATGGA GTGGGCCCCGTCGCCGTCCCCCTCGGTGTGGAGGAAGCGCGTTGCTCTTG AAGGCCCCCAGGAGTCTGGCAGGGTCACGTCTGTGGTGAGAGCAGTACCA TTCGACTACATACCGTCCTCAGCTTGTTTGGAACGTATTTGCCGTTTTTT TTATTGATCAGCTTCTGCTGCTGCGACTGGTTCGTGTAGCAGAGCCTGTG GCGATTATTGTTTCATACTTCTACTGTATTCAAATATCACTAAATATGTT GGTAGCTGGTGGGTTGTTGGTGTTGGACCCGCGACTGAGCGCCAAGTAGG GCAACCAACAGCAATCTTTGTCATTACTTTGGCCACAGCATTTTGTCGCT TGGATGAACCGCTTGCAGGTAGCAAGCAAGATTAGCTTGTTGAGGCACAT ACAAACTTCAAGTAGGGCTTACGAAGGGCTACACGGGCTCTACATTTTTT CTTGAAAATGAATTATTGACGTTTGCGTGTGTCCTGCGGTTAGCGTTCGG ACGAATTAACGCTGGATACATTGCCTGTCTCTCTGTTTCTTACCTCGTCG CCTCATCTCCTCTCGATTTCGTCACGATTGTGTTGGATCGATCTCTTATC CAGGTGTGCTACGACGCCAACAGCCAGTTCAACGAGCATGGGCACCCCGA TGGCGAAGAAATCCTCGTGCTGGAGGGTTCTTGGCAGGGTGCGTTACATG TTTCGGGCTCGGAGCTTCGACATGCTCTTGTATACCTTGAGATGACTCGC GCATCCCGTAGATGTTGATGTCTCCGCGCTTTTCCTCTCGGCGATGAAAT ACTTGAATGTGACCAACCTGGTGTCGAATTCATCGTCGGGCTGGAGTCCA ATACTCATGCCCGAGCGATCATTGTCATTGTCGAAACTGCGACTGCGACA CTTGTCCAAGCTGTTTGAGAACTCTGAGTTGTTGTACTTCGAAGTACGCA GGGTATGTGGTTGACAGTTTCGCCTTTGGGCAATTTTGGCACATTCTCAA CTTGAATGGAAGGCTTTTGATTAATTCAGAAAAGCACACACCACGTGTTT CTTAGCTTCTCCAGATTTGAAGAAAAAATGCATCTTTCGTTCGCTGGCAC GTCATGGATGGTTCAACACGGAGGCTGCTCGCATTAATCGATGAGTGGTT GACGAACGACATCTAGTTGTTCGCTGCTTGTGTTTGCCACACGGGTCACG ACCGGGGTTGCAATCTTTGAAGGCATTGTCAGAATGATCCCAGCAACAGA CTGCCTCTTCCCACAAATGGCGGTCTGCTATCACACCCTCTCTAGCGAAA GATTCGGCACTAGACTGACAGCACCTGAAACCTTGAGATCATCGATTAGT TCGATTTGCAATGCCATCCACCGTACGAGGCAGTGGGGGAAAAGCCTTAG CTGGGAAAGAATAGTACTGTTGTGTTGTGGTATGTGCAGACCCTTGGTTG GGAATGTTTTGAGATGCTTCCTTAGCGCGCCCCCTCAAGACATCGGGTAC GACAATGTTCAGGGTTTTGTTCGTGCTACTGCCAGCCCCGCCTCCGTTGT TCGCCCGTGTGCACCAATCTACGCCCCGTTACCCTCCCGCTGATGGTTAC TATTCTGATATTTCGTGTCTTTACTTATGTTTCGCCGCGTCAAAGATGCT AATGGAGACCACCCTGCTGGCACATACATGCTGAATCCGGAGGTGCGAAA CTTGTGTGTTCGAAGGCATAGATATGTCGCCCTGTATTCACGTTTCTCCA TCCCGCAGAGCTGAAGGACATGCAACCCAACCCTGTGCGCCACGATAGAG GTGGATCGGCACCATGGTAGCTTTGTCGTTCCATCTCTCGTTCCGCGCGC GCGTCGCGATATATAGGAGCGTTGCCGCTTTGCTGCACAGCAGTGCTCAG CAGAGACCGTGCAACACTGATGCCGCGTACGTGGGCAGGGCTTTTTCAAG GAGTGCTCTCTTGCGATCACGTGACGTGGGTTTGGCACCGCTGTCATCGC ATTTCGACTTTTTGACGACTACAATACCTAGTAGCTTTTTGTTTTTGTTT TGTCCTCTGCTCGGGGGATTGTGTCTTCGCGCGGCATGGGACCGGTTGTG ATTTAACGGCTCATCAGCAATCTCTGGATGCACAGCTGATCCGAGGTTAC GACACGAGTTCGAGTCGCCCGCCGCATTTCTGACGCACCCCAAGCGCAAA AACTCAGATTGTCCCATCTATTCTGTTCCCAACCCCTCGCTACATGCATG TATGACGTGCCACTTCATTGCGGGGCACGGCACCGTGAACGCAGGGGTTC CGCCACGCCCCTTCCTCCAAGGACGGGTGCGTGCTCTGGGTCAAGCTCCG GCAGCACGGTGGCCCTTCTCGTGAGCACACCCGTCTGGATACCAAGAGCA TGCCGTGGCAAGGCACGGAAACGCCAGGGGTGAAAGCTAAGGCCCTGTAC TCGTGAGTCCTCGTGAGTCGAGTCGCTGTTGTTCACCTGATATTTAGTCT TATCATACACAGTGGTGGTGTCGTTGAAACTTCTTGCAAGGGGATGCCCT CTTATTTTTGTGGTTCACTTTTTGCCGACTGCTGTGTGGTCTCGTGATGA GTATACAAATCGCATAGTACTCAAACGCTTGCTCCGTGTGTGATTTCGGG GGTGCATCTACCAAGCCACCTCCAACAGAGTGCCGATGGTTGCTGATAGC TGCTGACGCTGTGCAGCCTGTTCTTGGATCCTGTAGCAGCCGCCTTGGAT GTCACGTTGTTCGTCCGGCAAGCAAGGGCATTGCACCACTGGAATTCGTT TGCTGCAGCTCGATGCAGCCGCATCCCTCGAGCATTGTCCTGCCAGAGCT GCAGCGGTATTCGAAATTAAGCGACACTGATTCATGGCCGCCCGCCCGCC CACGACAATATTGCGTTTATTGCCATCCAAGCTCCTGCCTCTTGATGTGA AGCACTTAGCTTGCGATACTGCGCCCCGTTCAATCGAATAGGCACCCCGA GCACGTCGAGTCGATGCGCATCGAGAAGTGGGAGGCTGGTGCGAAGATCG AACGCAAATGCTCGAAGATGACTGAGTTTCTCGTTCTCGAAGGGGAAGCG CATGATGATGGTGGTGGTTGCGGTAAGAAGATGGTCTCTCGATGCTGCTT GGACCGCTGAAAACTTTGATGGTCGTGTTTGGTCCCGACGCACACGGTTG TTGAGCCTTGGAACACGCACGCTGAGGCGGATTGCCCGCCACGAGGATAT TCGACTTCCAGTCTGCTTATGGAAATGACCTTACATCGGTTGCGAGGCGG TGCCTTTTCCCCGTCAAGCGCTAAACCGTATTATTCTCTTGGCTCCATAC CAAATCTCCCATTCCCCATTCGCTGACCCTTTTACCTCTCGCTTGTCAAC CTTTTCCGTGCGGCTTGCTTGCTGGCTCATGCAGCAAGCGAAACCTTCGA ACAACGGAGCTGGCTGAGGGTGCCCGCGGGTGGCACGGTTTCCATAACTT CTGTTGGGGGCTGCGAGGTGTTTGTTAAGGAGGGAGAGTGGCTCCCTCCC GCCACCGAGGAAAGTTGAAACTAGCCTCTATTACGCTGGGCTACACCCGC GATCATCCCGTAGATAATGCGAACTAAGATATTGGGTCGACTCTCAACGG CTCGTAGACTCGCGCGACAGTAGGGGTGTTTTGCGGACGTCGTAGAACGT CGGCCGGATAGAAGTGCGGCGGCAAGCACACGACCGAGCTGCAGACTGCA CATTCCCAATTCCAACCGGAGAAAGCTTGCAGCTGGTTTGAAGCCCGGCC CGAGCAATGCGCAAGCCTCCGAAAGACAGCACTTACAAATGAGTTTTCAG GCCCCCATTTACTAGGCGTCAATATGGGCATAAGAGGCTATCGCGGCCTT GCGTACATACATACGTGTGGGGTTGCTTGATTGCGGGATTCTCAAATTTC ACCTGGTTTTACAGAGCAACTTTGGCTAGTTAGAATTTTATTCCTTGCAG AACCTTTACCTTTTTCTGTTCTCGAGACTCAGCACCCACTAGATATTGCT GTTGAAGAAGCGCCGATTTTTCTCAAGGCAATTATTACTCGGGCGTAGAA ATAGCAGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2146:2298..6455+

>mRNA_L-elsbetiae_contig2146.6560.1 ID=mRNA_L-elsbetiae_contig2146.6560.1|Name=mRNA_L-elsbetiae_contig2146.6560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig2146:2298..6455+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGTGGGCCCCGTCGCCGTCCCCCTCGGTGTGGAGGAAGCGCGTTGC
TCTTGAAGGCCCCCAGGAGTCTGGCAGGGTCACGTCTGTGATGGAGTGGG
CCCCGTCGCCGTCCCCCTCGGTGTGGAGGAAGCGCGTTGCTCTTGAAGGC
CCCCAGGAGTCTGGCAGGGTCACGTCTGTGGTGTGCTACGACGCCAACAG
CCAGTTCAACGAGCATGGGCACCCCGATGGCGAAGAAATCCTCGTGCTGG
AGGGTTCTTGGCAGGGTGTGCTACGACGCCAACAGCCAGTTCAACGAGCA
TGGGCACCCCGATGGCGAAGAAATCCTCGTGCTGGAGGGTTCTTGGCAGG
ATGCTAATGGAGACCACCCTGCTGGCACATACATGCTGAATCCGGAGATG
CTAATGGAGACCACCCTGCTGGCACATACATGCTGAATCCGGAGGGGTTC
CGCCACGCCCCTTCCTCCAAGGACGGGTGCGTGCTCTGGGTCAAGCTCCG
GCAGCACGGTGGCCCTTCTCGTGAGCACACCCGTCTGGATACCAAGAGCA
TGCCGTGGCAAGGCACGGAAACGCCAGGGGTGAAAGCTAAGGCCCTGTAC
TCGGGTTCCGCCACGCCCCTTCCTCCAAGGACGGGTGCGTGCTCTGGGTC
AAGCTCCGGCAGCACGGTGGCCCTTCTCGTGAGCACACCCGTCTGGATAC
CAAGAGCATGCCGTGGCAAGGCACGGAAACGCCAGGGGTGAAAGCTAAGG
CCCTGTACTCGCACCCCGAGCACGTCGAGTCGATGCGCATCGAGAAGTGG
GAGGCTGGTGCGAAGATCGAACGCAAATGCTCGAAGATGACTGAGTTTCT
CGTTCTCGAAGGGGAAGCGCATGATGATGGTGGTGGTTGCGGCACCCCGA
GCACGTCGAGTCGATGCGCATCGAGAAGTGGGAGGCTGGTGCGAAGATCG
AACGCAAATGCTCGAAGATGACTGAGTTTCTCGTTCTCGAAGGGGAAGCG
CATGATGATGGTGGTGGTTGCGCAAGCGAAACCTTCGAACAACGGAGCTG
GCTGAGGGTGCCCGCGGGTGGCACGGTTTCCATAACTTCTGTTGGGGGCT
GCGAGGTGTTTGTTAAGGAGGGAGAGTGGCTCCCTCCCGCCACCGAGGAA
AGTTGACAAGCGAAACCTTCGAACAACGGAGCTGGCTGAGGGTGCCCGCG
GGTGGCACGGTTTCCATAACTTCTGTTGGGGGCTGCGAGGTGTTTGTTAA
GGAGGGAGAGTGGCTCCCTCCCGCCACCGAGGAAAGTTGA
back to top