mRNA_L-elsbetiae_contig2146.6560.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: D7FM74_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM74_ECTSI) HSP 1 Score: 404 bits (1038), Expect = 1.340e-138 Identity = 192/231 (83.12%), Postives = 208/231 (90.04%), Query Frame = 1 Query: 1 LSSPRSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKCSKMTEFLVLEGEA--HDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWLPPATEES 687 LS RSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVV YDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAP S+DGCVLWVKLRQHGGPSR+HTRLDT SM W+ T+ PGVKAK LYSHP+HVESMRIEKW+AGAK+ER+C KMTEFLVLEGEA HD ASETF +RSWLR+PAG T+S+TS GC+VFVKEGEWLPP++ + Sbjct: 5 LSVDRSVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVRYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPCSRDGCVLWVKLRQHGGPSRKHTRLDTNSMQWEDTDIPGVKAKELYSHPDHVESMRIEKWDAGAKVERECQKMTEFLVLEGEAEAHD-----ASETFTKRSWLRLPAGATLSMTSAAGCQVFVKEGEWLPPSSSNT 230
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A1Y5TZ85_9PROT (ChrR Cupin-like domain protein n=1 Tax=Oceanibacterium hippocampi TaxID=745714 RepID=A0A1Y5TZ85_9PROT) HSP 1 Score: 226 bits (576), Expect = 7.500e-69 Identity = 113/220 (51.36%), Postives = 150/220 (68.18%), Query Frame = 1 Query: 22 RVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKC-SKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWLPPAT 678 RV++ T+ M W SPSPSVWRKR+ L GP E+GRVT++V Y+ S+F H HPDGEEILVLEG++ D +GD+PAG+Y+LNPEGFRHAP S DGC+L+VKLRQ GGP R H +DT ++ WQ PG K LY+ P+ +E MR+ + + GA++ R + E LVLEG D+ G T+ + SWLR P G S+ S G ++VK+G LPPA+ Sbjct: 12 RVAMDTAAMAWQASPSPSVWRKRLDLSGPAEAGRVTALVRYEPGSRFPAHEHPDGEEILVLEGTFSDEHGDYPAGSYLLNPEGFRHAPFSVDGCLLFVKLRQFGGPGRAHHAIDTAALDWQPGNMPGRSVKPLYAAPDGIEQMRLVRLDPGAQVPRHVHDRGEEVLVLEGAIADEDG-----TYGKGSWLRFPDGSAHSVRSEHGAVIYVKQGH-LPPAS 225
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A7Y2ICR3_9GAMM (Anti-sigma factor n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2ICR3_9GAMM) HSP 1 Score: 212 bits (540), Expect = 2.320e-63 Identity = 107/214 (50.00%), Postives = 139/214 (64.95%), Query Frame = 1 Query: 19 VRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKCSKM-TEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEG 657 VR + T MEW SPS +VWRKRV L G ESG+VTS+V Y S F H HP+GEEILVLEG + D +GD PAGTY+LNPEGFRHAP S+ GC+L+VKLRQ GP REH +DT+ WQ T+ GV K+LY + ++ R+E+WEA + + EF VL+GE DD G + +WLR+PAGG S + GC++++K+G Sbjct: 14 VRAFMDTQAMEWTASPSGTVWRKRVHLVGAPESGQVTSIVRYQPESSFPAHDHPEGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPFSQQGCLLFVKLRQFPGPDREHHVIDTRDREWQPTQRKGVWQKSLYRQAGYSDTTRLERWEAESTAGTISHEQGAEFFVLDGEFEDDEG-----VYPAGTWLRIPAGGMHSPGTSRGCQLYIKQG 222
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A523JHQ7_9DELT (Anti-sigma factor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A523JHQ7_9DELT) HSP 1 Score: 207 bits (527), Expect = 1.860e-61 Identity = 107/212 (50.47%), Postives = 138/212 (65.09%), Query Frame = 1 Query: 25 VSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKCSKM-TEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEG 657 V +HTS MEW PSPS SV RKRV L G E+G+VTSVV Y NS F H HP+GEEILVL+G + D +GD PAG+Y+LNPEGFRHAP SK GC+++VKLRQ+GG R H L T +PW+ G++ K LYS + MR+E+W GA + E LVL G D+ G ++++ SWLR+PAG T + S GCE+++K G Sbjct: 15 VVMHTSSMEWLPSPSGSVLRKRVHLVGGAEAGQVTSVVRYLENSSFAAHDHPEGEEILVLDGVFSDEHGDWPAGSYLLNPEGFRHAPFSKPGCLIFVKLRQYGGRGRRHVALCTHELPWKSGPHAGIELKLLYSEAGFPDEMRLERWAPGATPGTVSYEGGAEILVLRGRLEDEQG-----SYDKLSWLRLPAGATHTPVSPNGCELYLKTG 221
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A7C2JUM9_9GAMM (Anti-sigma factor n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2JUM9_9GAMM) HSP 1 Score: 206 bits (525), Expect = 4.060e-61 Identity = 104/213 (48.83%), Postives = 139/213 (65.26%), Query Frame = 1 Query: 22 RVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIER-KCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEG 657 RV+V T+ M W PSPS +V+RKRV L GP ESG+VTSVV Y + F+ H HPDGEEILVLEG + D +GD PAGTY+LNPEGFRH+P S+DGCVL+VKLRQ G +REH L T ++ W+ GV + LY+ ++MR+E+W A++ + E VLEG D+ G F + +WLR+P G S ++ GC +++KEG Sbjct: 17 RVAVDTAAMAWTPSPSRTVFRKRVHLVGPPESGQVTSVVRYGPGATFHTHAHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHSPFSRDGCVLFVKLRQFPGRTREHVALRTDTLEWRPAARAGVAVRPLYAQAGFADTMRLERWPPEARLRPIEYPSGAELFVLEGSFRDEDG-----EFARGAWLRLPPGAAHSPSTAEGCVLYIKEG 224
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A536YCZ3_9PROT (Anti-sigma factor n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536YCZ3_9PROT) HSP 1 Score: 205 bits (522), Expect = 1.420e-60 Identity = 109/213 (51.17%), Postives = 132/213 (61.97%), Query Frame = 1 Query: 16 SVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIERKCSKM-TEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVK 651 SVR T+ MEWAPSPS SVWRKRV L GP ESG+VTSVV Y S+F H HP GEEILVLEG + D +GD PAGT++LNPEGFRHAP S+ GCVL+VKLRQ G R H +DT + W+ + P V KALY + MR+E+WE A + + E VL GE D+ G + WLR+PAG S GGC V++K Sbjct: 10 SVRAVADTTRMEWAPSPSRSVWRKRVHLVGPPESGQVTSVVRYGPRSRFPAHDHPQGEEILVLEGVFSDEHGDWPAGTFLLNPEGFRHAPFSEPGCVLFVKLRQFPGRERSHIVIDTHKLAWEPSSLPAVAYKALYQQTGFSDVMRLERWEPQADLGVVSYEQGAELFVLGGEFVDEAG-----AYSAGCWLRLPAGSEHHPRSAGGCTVYIK 217
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A534ASB5_9GAMM (Anti-sigma factor n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A534ASB5_9GAMM) HSP 1 Score: 203 bits (517), Expect = 4.940e-60 Identity = 105/218 (48.17%), Postives = 143/218 (65.60%), Query Frame = 1 Query: 16 SVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKI-ERKCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWL 666 S RV V T + W PSPS +VWRKR+ L GP E+G+VTS+V Y +S+F H HPDGEEILVLEG + D +GD PAGTY+LNPEGFRHAP S+ GC L+VKLRQ G R H +DT+++ WQ E G K LY+ + +SMR+E+W +G++ E K S+ E VL G D+ G +++ +WLR+P + GGCE+++KEG ++ Sbjct: 10 SARVVVDTKTLPWTPSPSGTVWRKRLHLVGPPEAGQVTSLVRYQPHSEFPLHDHPDGEEILVLEGVFSDEHGDWPAGTYLLNPEGFRHAPYSRGGCHLFVKLRQFPGKDRRHVVIDTQNLSWQTRE--GRAIKLLYAQVGYADSMRLERWPSGSRPGELKYSQGAELWVLGGAFEDERG-----SYDAHTWLRLPPQARHCPRTSGGCELYIKEGGFV 220
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: UPI000369B847 (cupin domain-containing protein n=1 Tax=Marinobacterium rhizophilum TaxID=420402 RepID=UPI000369B847) HSP 1 Score: 203 bits (517), Expect = 6.160e-60 Identity = 110/227 (48.46%), Postives = 140/227 (61.67%), Query Frame = 1 Query: 22 RVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKI-ERKCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWLP----PATEES 687 RV VHT W PSP V RKR+ L G ESG+VTS+V Y A ++F H HPDGEEILVL+G + D GD PAG+Y+LNP GF+HAPSSK GC+L+VKLRQ+ G R H L K++ WQ PG++ K LY PEH E+MR+E+W AG R+ E LV+ G +D+ G ++ WLR+PAG T S GC +++KEG P TEES Sbjct: 11 RVHVHTDAEPWVPSPGGEVLRKRLHLVGMPESGQVTSLVRYPAGAEFPLHPHPDGEEILVLDGVFTDQEGDWPAGSYLLNPAGFQHAPSSKTGCLLFVKLRQYAG-MRHHISLAAKAISWQPL-APGIELKMLYKEPEHAETMRLERWAAGTLAGPRRYPGGVEILVIHGGFNDEQG-----DYQSHDWLRLPAGSTHRPASKTGCTLYIKEGGLAALRSVPLTEES 230
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: UPI000688EB27 (cupin domain-containing protein n=1 Tax=Marinobacterium jannaschii TaxID=64970 RepID=UPI000688EB27) HSP 1 Score: 203 bits (516), Expect = 9.250e-60 Identity = 105/218 (48.17%), Postives = 134/218 (61.47%), Query Frame = 1 Query: 16 SVRVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKI-ERKCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEGEWL 666 S RV + S M+W PSPS +VWRKR L G ESG+VTS+V YD ++F H HP GEEILVLEG + D GD PAG+Y+LNPEGF HAP S +GC+L VKLRQ G R H LDT + WQ +E GV K LY+ ++ E MR+E W + E + + EF V+ GE D+ G + SWLR+PAG + S GCE+++K G L Sbjct: 9 SKRVQLDASSMDWQPSPSGTVWRKRFHLVGEGESGQVTSLVRYDPGARFPSHPHPGGEEILVLEGIFSDQQGDWPAGSYLLNPEGFEHAPGSAEGCLLLVKLRQFAGQERRHLALDTAELAWQPSEIKGVLVKQLYADNDYPEQMRLEHWAPDSHCGELEYPEGAEFFVISGEFEDEQG-----RYPAGSWLRLPAGSRHNPRSALGCELYIKTGHLL 221
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Match: A0A2N5Y5A5_9GAMM (Anti-sigma factor n=1 Tax=Kineobactrum sediminis TaxID=1905677 RepID=A0A2N5Y5A5_9GAMM) HSP 1 Score: 202 bits (513), Expect = 2.360e-59 Identity = 101/213 (47.42%), Postives = 136/213 (63.85%), Query Frame = 1 Query: 22 RVSVHTSGMEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEILVLEGSWQDANGDHPAGTYMLNPEGFRHAPSSKDGCVLWVKLRQHGGPSREHTRLDTKSMPWQGTETPGVKAKALYSHPEHVESMRIEKWEAGAKIER-KCSKMTEFLVLEGEAHDDGGGCASETFEQRSWLRVPAGGTVSITSVGGCEVFVKEG 657 RV V T M+W PSP+ V RKR+ L G ESG+VTS+V Y+ + F H HP GEEILVLEG + D +GD PAG+Y+LNPEGF+HAP S++GC+L+VKLRQ+ G REH +DT + PWQ + K LY+ + + MR+E W+ A I + + E LVL+G DD G ++ WLR+PAGG + TS CE+++KEG Sbjct: 15 RVVVDTQSMDWTPSPAGQVLRKRLHLVGQAESGQVTSLVRYEPGASFPAHDHPQGEEILVLEGVFSDEHGDWPAGSYLLNPEGFKHAPFSREGCLLFVKLRQYPGADREHVAIDTTARPWQPSVRKNTSWKKLYAQEPYTDFMRLESWDTPAAIGQINFPQGAEILVLKGSFADDEG-----SYRTHCWLRIPAGGAIHPTSNEYCELYIKEG 222 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2146.6560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2146.6560.1 >prot_L-elsbetiae_contig2146.6560.1 ID=prot_L-elsbetiae_contig2146.6560.1|Name=mRNA_L-elsbetiae_contig2146.6560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=215bp MEWAPSPSPSVWRKRVALEGPQESGRVTSVVCYDANSQFNEHGHPDGEEIback to top mRNA from alignment at L-elsbetiae_contig2146:2298..6455+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2146.6560.1 ID=mRNA_L-elsbetiae_contig2146.6560.1|Name=mRNA_L-elsbetiae_contig2146.6560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4158bp|location=Sequence derived from alignment at L-elsbetiae_contig2146:2298..6455+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2146:2298..6455+ >mRNA_L-elsbetiae_contig2146.6560.1 ID=mRNA_L-elsbetiae_contig2146.6560.1|Name=mRNA_L-elsbetiae_contig2146.6560.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1290bp|location=Sequence derived from alignment at L-elsbetiae_contig2146:2298..6455+ (Laminarionema elsbetiae ELsaHSoW15)back to top |