mRNA_L-elsbetiae_contig21450.6559.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21450.6559.1
Unique NamemRNA_L-elsbetiae_contig21450.6559.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21450.6559.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 9.530e-20
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSES 135
            RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAV+E+
Sbjct: 1110 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVAEN 1154
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BLAST of mRNA_L-elsbetiae_contig21450.6559.1 vs. uniprot
Match: A0A6H5JVI6_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVI6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 9.550e-20
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSES 135
            RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAV+E+
Sbjct:  324 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVAEN 368
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BLAST of mRNA_L-elsbetiae_contig21450.6559.1 vs. uniprot
Match: A0A2D4C5L0_PYTIN (Transcription initiation factor TFIID subunit 1 puta n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5L0_PYTIN)

HSP 1 Score: 48.9 bits (115), Expect = 2.300e-5
Identity = 19/43 (44.19%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVS 129
            R+LTM Q       +G+P   +K LRRWDR+H+++EL+ VA +
Sbjct:  850 RKLTMKQAGDVLRNLGVPDGDIKKLRRWDRIHLLRELSNVATA 892
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BLAST of mRNA_L-elsbetiae_contig21450.6559.1 vs. uniprot
Match: A0A1Z5JFQ5_FISSO (Transcription initiation factor TFIID subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFQ5_FISSO)

HSP 1 Score: 48.9 bits (115), Expect = 2.300e-5
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSE 132
            R+LTM Q+A+   + G+P+  + TL+RWDRVH+I++L+  A S+
Sbjct:  881 RKLTMKQMAALLRSYGMPQKKIDTLKRWDRVHVIRDLSTKAASD 924
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BLAST of mRNA_L-elsbetiae_contig21450.6559.1 vs. uniprot
Match: A0A7S0C985_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C985_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 2.760e-5
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSE 132
            R+LTM Q+AS   + G+ ++ + TL+RWDRVH I++L+  A S+
Sbjct:   54 RKLTMKQMASLLRSYGMKQNDIDTLKRWDRVHCIRDLSTKAASD 97
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BLAST of mRNA_L-elsbetiae_contig21450.6559.1 vs. uniprot
Match: A0A7R9W476_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W476_9STRA)

HSP 1 Score: 46.6 bits (109), Expect = 3.050e-5
Identity = 20/44 (45.45%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSE 132
            R+LTM Q+AS   + G+ +  + TL+RWDRVH+I++L+  A S+
Sbjct:   38 RKLTMKQMASLLRSYGMGQKEIDTLKRWDRVHVIRDLSTKAASD 81
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BLAST of mRNA_L-elsbetiae_contig21450.6559.1 vs. uniprot
Match: B7FQ37_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQ37_PHATC)

HSP 1 Score: 48.1 bits (113), Expect = 4.310e-5
Identity = 20/44 (45.45%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 RRLTMLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSE 132
            R+LTM Q+AS   + G+ ++ + TL+RWDRVH+I++L+  A S+
Sbjct:  873 RKLTMKQMASLLRSYGMTQEKIDTLKRWDRVHVIRDLSTKAASD 916
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21450.6559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FIW7_ECTSI9.530e-2095.56Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JVI6_9PHAE9.550e-2095.56Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A2D4C5L0_PYTIN2.300e-544.19Transcription initiation factor TFIID subunit 1 pu... [more]
A0A1Z5JFQ5_FISSO2.300e-545.45Transcription initiation factor TFIID subunit 1 n=... [more]
A0A7S0C985_9STRA2.760e-545.45Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A7R9W476_9STRA3.050e-545.45Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
B7FQ37_PHATC4.310e-545.45Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21450contigL-elsbetiae_contig21450:1461..1601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue2.5e-14
Seed eggNOG ortholog2880.D7FIW7
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Exons1
Model size141
Cds size129
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.555098-CDS-L-elsbetiae_contig21450:1460..15891622815876.555098-CDS-L-elsbetiae_contig21450:1460..1589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21450 1461..1589 -
1691683162.0989718-CDS-L-elsbetiae_contig21450:1460..15891691683162.0989718-CDS-L-elsbetiae_contig21450:1460..1589Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21450 1461..1589 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.5656168-UTR-L-elsbetiae_contig21450:1589..16011622815876.5656168-UTR-L-elsbetiae_contig21450:1589..1601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21450 1590..1601 -
1691683162.109854-UTR-L-elsbetiae_contig21450:1589..16011691683162.109854-UTR-L-elsbetiae_contig21450:1589..1601Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21450 1590..1601 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21450.6559.1prot_L-elsbetiae_contig21450.6559.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21450 1461..1589 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21450.6559.1

>prot_L-elsbetiae_contig21450.6559.1 ID=prot_L-elsbetiae_contig21450.6559.1|Name=mRNA_L-elsbetiae_contig21450.6559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=43bp
MLQLASTCEAMGIPKDTVKTLRRWDRVHMIKELAGVAVSESE*
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mRNA from alignment at L-elsbetiae_contig21450:1461..1601-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21450.6559.1 ID=mRNA_L-elsbetiae_contig21450.6559.1|Name=mRNA_L-elsbetiae_contig21450.6559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=141bp|location=Sequence derived from alignment at L-elsbetiae_contig21450:1461..1601- (Laminarionema elsbetiae ELsaHSoW15)
AGGCGGCTGACGATGCTCCAGCTGGCGTCGACGTGCGAGGCGATGGGCAT
CCCGAAGGACACCGTCAAGACGCTGAGGCGGTGGGACAGGGTGCACATGA
TCAAGGAGCTGGCCGGTGTGGCGGTAAGTGAGAGTGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21450:1461..1601-

>mRNA_L-elsbetiae_contig21450.6559.1 ID=mRNA_L-elsbetiae_contig21450.6559.1|Name=mRNA_L-elsbetiae_contig21450.6559.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=258bp|location=Sequence derived from alignment at L-elsbetiae_contig21450:1461..1601- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCCAGCTGGCGTCGACGTGCGAGGCGATGGGCATCCCGAAGGACAC
CGTCAAGACGCTGAGGCGGTGGGACAGGGTGCACATGATCAAGGAGCTGG
CCGGTGTGGCGGTAAGTGAGAGTGAGTGAATGCTCCAGCTGGCGTCGACG
TGCGAGGCGATGGGCATCCCGAAGGACACCGTCAAGACGCTGAGGCGGTG
GGACAGGGTGCACATGATCAAGGAGCTGGCCGGTGTGGCGGTAAGTGAGA
GTGAGTGA
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