mRNA_L-elsbetiae_contig2145.6557.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2145.6557.1
Unique NamemRNA_L-elsbetiae_contig2145.6557.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: D7FI96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI96_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 2.190e-41
Identity = 72/106 (67.92%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 IRWKTIRSTGTVFSGRSPSRKCFLMEDLCSLALTLKGSV---GGYMIKGDPIYSLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMV 309
            + WKT R TG  FSG +P RKCF        AL L  S    GGYM+KGDPIYSLTANKHGL VRFSNLESIED+H G++  LDWD ATGEWVHVEIITTFG+SMV
Sbjct:    1 MHWKTTRYTGIAFSGLNPWRKCFRGGVTSRPALELPKSTRAPGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGKSMV 106
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: D7G946_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G946_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.170e-32
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:  103 LKGSVGGYMIKGDPIYSLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMVVS 315
            LKGS GGYM+KGDPIYSLTANKHGL VRFSNLESIED+H G++  LDWD ATGEWVHVEIITTFG+SM V+
Sbjct:  204 LKGSAGGYMVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVN 274
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.000e-31
Identity = 59/71 (83.10%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:  103 LKGSVGGYMIKGDPIYSLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMVVS 315
            LKGS GGYMIKGDPIYSLTANKHGL VRFSNLESIED+H G++  LDWD ATGEWVHVEIITTFG+SM V+
Sbjct:  247 LKGSAGGYMIKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVN 317
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: A0A6H5JXY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXY2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 4.470e-31
Identity = 58/71 (81.69%), Postives = 64/71 (90.14%), Query Frame = 1 
Query:  103 LKGSVGGYMIKGDPIYSLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMVVS 315
            LKGS GGYMIKGDPIYSLTANKHGL VRFSNLE+IED+H G++  LDWD  TGEWVHVEIITTFG+SMVV+
Sbjct:   71 LKGSAGGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVVN 141
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: A0A6H5JBB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB3_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 7.150e-31
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:  103 LKGSVGGYMIKGDPIYSLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMVV 312
            LKGS GGYMIKGDPIYSLTANKHGL VRFSNLE+IED+H G++  LDWD  TGEWVHVEIITTFG+SMVV
Sbjct:  145 LKGSAGGYMIKGDPIYSLTANKHGLHVRFSNLETIEDYHDGLDMPLDWDAVTGEWVHVEIITTFGKSMVV 214
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 4.480e-26
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:  127 MIKGDPIYSLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMVVS 315
            M+KGDPIYSLTANKHGL VRFSNLESIED+H G++  LDWD ATGEWVHVEIITTFG+SM V+
Sbjct:    1 MVKGDPIYSLTANKHGLHVRFSNLESIEDYHDGLDMPLDWDAATGEWVHVEIITTFGQSMEVN 63
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: A0A6H5KAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW5_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 9.860e-21
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:  106 KGSVGGYMIKGDPIYSLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMVV 312
            KG V G MIK DPIY LTANK GL VRFSN E  ++FH G+ + L+W D+TG+WVHV+I+TTFGE MVV
Sbjct:  124 KGKVKGTMIKLDPIYCLTANKDGLMVRFSNREMPDNFHEGLSKHLNWKDSTGQWVHVKIVTTFGEFMVV 192
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-17
Identity = 41/70 (58.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:  103 LKGSVGGYMIKGDPIYSLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMVV 312
            +KG  GG+ +KG+P++S+TAN +G+ VRF+N ES  D   GM++ L W+DATGEWVHVEI TTFG+SM V
Sbjct:  148 MKGVSGGFQLKGNPLFSVTANNNGINVRFNNEES--DKVEGMDDTLSWEDATGEWVHVEIRTTFGKSMEV 215
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BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Match: A0A6H5K5S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S3_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.490e-11
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:  103 LKGSV-GGYMIKGDPIYSLTANKHGLQVRFSNLE-SIEDFHPGMEEELDWDDATGEWVHVEIITTFGESMVV 312
            +KG+  GG  + GDPI S++AN  GL VRFSN++ +I D++       +W+DATGEWVHV I T FGE M V
Sbjct:  187 IKGAYNGGQTVDGDPIVSISANLDGLHVRFSNIDKTIPDYYTHDSWYRNWEDATGEWVHVTIDTVFGEFMEV 258
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2145.6557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FI96_ECTSI2.190e-4167.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G946_ECTSI4.170e-3281.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQZ0_9PHAE3.000e-3183.10WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JXY2_9PHAE4.470e-3181.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBB3_9PHAE7.150e-3182.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH2_ECTSI4.480e-2680.95WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAW5_9PHAE9.860e-2165.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDH3_ECTSI1.410e-1758.57WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K5S3_9PHAE1.490e-1151.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2145contigL-elsbetiae_contig2145:6069..7095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue9.5e-23
Seed eggNOG ortholog2880.D8LDH2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons3
Model size318
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2145.6557.1prot_L-elsbetiae_contig2145.6557.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2145 6069..7095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.3473158-CDS-L-elsbetiae_contig2145:6068..61701622815876.3473158-CDS-L-elsbetiae_contig2145:6068..6170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2145 6069..6170 +
1691683161.9619565-CDS-L-elsbetiae_contig2145:6068..61701691683161.9619565-CDS-L-elsbetiae_contig2145:6068..6170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2145 6069..6170 +
1622815876.3574712-CDS-L-elsbetiae_contig2145:6656..67991622815876.3574712-CDS-L-elsbetiae_contig2145:6656..6799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2145 6657..6799 +
1691683161.972725-CDS-L-elsbetiae_contig2145:6656..67991691683161.972725-CDS-L-elsbetiae_contig2145:6656..6799Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2145 6657..6799 +
1622815876.366935-CDS-L-elsbetiae_contig2145:7022..70951622815876.366935-CDS-L-elsbetiae_contig2145:7022..7095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2145 7023..7095 +
1691683161.981025-CDS-L-elsbetiae_contig2145:7022..70951691683161.981025-CDS-L-elsbetiae_contig2145:7022..7095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2145 7023..7095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2145.6557.1

>prot_L-elsbetiae_contig2145.6557.1 ID=prot_L-elsbetiae_contig2145.6557.1|Name=mRNA_L-elsbetiae_contig2145.6557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
IRWKTIRSTGTVFSGRSPSRKCFLMEDLCSLALTLKGSVGGYMIKGDPIY
SLTANKHGLQVRFSNLESIEDFHPGMEEELDWDDATGEWVHVEIITTFGE
SMVVS*
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mRNA from alignment at L-elsbetiae_contig2145:6069..7095+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2145.6557.1 ID=mRNA_L-elsbetiae_contig2145.6557.1|Name=mRNA_L-elsbetiae_contig2145.6557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1027bp|location=Sequence derived from alignment at L-elsbetiae_contig2145:6069..7095+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCGTTGGAAGACCATCAGATCGACTGGGACTGTGTTTTCGGGCCGGAG
TCCCTCGAGGAAGTGTTTTCTAATGGAGGACTTATGCTCCCTTGCCCTGA
CGGTAGCAAAGCAAAGCCATGCGCAAGGTGAGAAGAAGGCCTTTCCATAA
GGATCTTTTTGTGCGTGCTCCTCTTCAATCCTTGGCTGCGACTGCCCCCA
CTCTCCTGCGGGCGAAGCAGCAACTACGACGCAAGATCCACATCAGGACG
CGCAACCGTATACTACTACACGTCTCTCACGCTGCAGTTTGTGGATACCA
ATCAATCGCTCGCCTACTGCCGGCTGCAATCTTGGTAGGAATTACGATAC
ACACACCACGTTGCGTGGCAAGCCCCACCTTCGTATCCTGCGCTGTCAAC
AAATCTGCAATCCGACATGATTCTCTCGCAGGTTCATCGTTGGCAAGCAC
GAAGAGCGTTCGGAGGTGAAGGTGCAAGAGGGGCCCGAAGGGTTTCCGTT
CCTCTACGGCGAGACTTATATTTTTAAGTACAGCTTCAAAGCAGTGGATG
AGATGAAAGTGGCCACGCGGTTCACCCACCTCGGCCAGCTCAAGGGCTCT
GTCGGCGGCTACATGATCAAGGGAGACCCGATCTACTCCCTCACCGCCAA
CAAGCACGGTCTGCAGGTTCGCTTCAGCAACCTGGAATCGATCGAAGATT
TCCATCCCGGCATGGAGGAGGAGCTCGACTGGTGAGTAAAGACGTGGGGA
AGTGGGCGTGGAACGCCAAGAAGTTTCCTCTCTCGCAGGCTTCCGCCGTT
CTCAAGCTGCTCTGCTGGTGCTGGACCCAGCACTTGACTTGAACATCAAA
TATTGGCCATGTAAGAAACTTGCACTGGTCTGACGCATGTCTATTCTACG
GGCGCTCTGATGATCTCACATTGACGTACGATATGTGTTTCTTTTATCAA
CAAGGGATGATGCCACTGGGGAATGGGTGCACGTGGAGATCATCACGACC
TTCGGGGAGTCCATGGTGGTAAGTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2145:6069..7095+

>mRNA_L-elsbetiae_contig2145.6557.1 ID=mRNA_L-elsbetiae_contig2145.6557.1|Name=mRNA_L-elsbetiae_contig2145.6557.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig2145:6069..7095+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCGTTGGAAGACCATCAGATCGACTGGGACTGTGTTTTCGGGCCGGAG
TCCCTCGAGGAAGTGTTTTCTAATGGAGGACTTATGCTCCCTTGCCCTGA
CGATTCGTTGGAAGACCATCAGATCGACTGGGACTGTGTTTTCGGGCCGG
AGTCCCTCGAGGAAGTGTTTTCTAATGGAGGACTTATGCTCCCTTGCCCT
GACGCTCAAGGGCTCTGTCGGCGGCTACATGATCAAGGGAGACCCGATCT
ACTCCCTCACCGCCAACAAGCACGGTCTGCAGGTTCGCTTCAGCAACCTG
GAATCGATCGAAGATTTCCATCCCGGCATGGAGGAGGAGCTCGACTGCTC
AAGGGCTCTGTCGGCGGCTACATGATCAAGGGAGACCCGATCTACTCCCT
CACCGCCAACAAGCACGGTCTGCAGGTTCGCTTCAGCAACCTGGAATCGA
TCGAAGATTTCCATCCCGGCATGGAGGAGGAGCTCGACTGGGATGATGCC
ACTGGGGAATGGGTGCACGTGGAGATCATCACGACCTTCGGGGAGTCCAT
GGTGGTAAGTTAAGGATGATGCCACTGGGGAATGGGTGCACGTGGAGATC
ATCACGACCTTCGGGGAGTCCATGGTGGTAAGTTAA
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