mRNA_L-elsbetiae_contig2144.6554.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A6H5JJR2_9PHAE (DNA topoisomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR2_9PHAE) HSP 1 Score: 264 bits (674), Expect = 1.110e-87 Identity = 124/134 (92.54%), Postives = 133/134 (99.25%), Query Frame = 1 Query: 73 MAVIKAINVAEKPSVAKELANILGGGNSRRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 MAVIKAINVAEKPSVAKELANILGGGNSRRRQG+SQYNPIFEF+NCSMMGQSV+MKITSVTGHLME+EFAEPYGK+W ACQP+ELFTAP+IRYVK+DKKDLE+QLVDEARGCQWLVLWLDCDREGENIAYEVIE Sbjct: 1 MAVIKAINVAEKPSVAKELANILGGGNSRRRQGRSQYNPIFEFDNCSMMGQSVNMKITSVTGHLMELEFAEPYGKKWGACQPIELFTAPLIRYVKDDKKDLERQLVDEARGCQWLVLWLDCDREGENIAYEVIE 134
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: W7U2W4_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2W4_9STRA) HSP 1 Score: 163 bits (413), Expect = 2.670e-46 Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = 1 Query: 73 MAVIKAINVAEKPSVAKELANILGGGNS--RRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 MA +K +NVAEKPSVAKE++ IL GGN RRRQG S YNPI+EF C + G+ V M TSV GHL+E+EF EPY K W AC+P +LFT P+ + V +DK+ LE+ L EAR CQ L+LWLDCD EGENIA+EV++ Sbjct: 1 MAPVKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEF-GCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKESLERCLKSEARVCQRLILWLDCDLEGENIAFEVMD 135
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A836XYK3_9ROSI (DNA topoisomerase n=2 Tax=Salix TaxID=40685 RepID=A0A836XYK3_9ROSI) HSP 1 Score: 159 bits (403), Expect = 3.560e-46 Identity = 77/132 (58.33%), Postives = 101/132 (76.52%), Query Frame = 1 Query: 79 VIKAINVAEKPSVAKELANILGGGNSRRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 +IK +NVAEKPSVAK +A IL R R+G+S+YN IFEF N S+ GQ M +TSVTGHLME++F + + K W +C P +L+TAP+ ++V EDK D+++ L +EAR C WLVLWLDCDREGENIA+EV+E Sbjct: 1 MIKVLNVAEKPSVAKSVATILSRNQLRVREGRSRYNKIFEF-NYSINGQQCHMLVTSVTGHLMEVDFEDRFRK-WHSCDPADLYTAPVRKHVPEDKLDIKRTLEEEARKCHWLVLWLDCDREGENIAFEVME 130
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A4D8YX91_SALSN (DNA topoisomerase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8YX91_SALSN) HSP 1 Score: 165 bits (418), Expect = 4.910e-46 Identity = 81/142 (57.04%), Postives = 107/142 (75.35%), Query Frame = 1 Query: 49 LACGEGERMAVIKAINVAEKPSVAKELANILGGGNSRRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 +A G G R I+A+NVAEKPSVAK++A IL G R R G+S+YN IFEF+ C + Q + M TSVTGHLME+EF + Y K W +C P++L+ AP+ +YV +DK D++K L +EAR CQWL+LWLDCDREGENIA+EV++ Sbjct: 1 MAGGGGGRS--IRALNVAEKPSVAKQVAGILSKGGMRARDGRSRYNRIFEFD-CVVRSQLIQMSFTSVTGHLMELEFDDRYRK-WHSCDPLDLYHAPVKKYVPQDKLDIQKTLEEEARKCQWLILWLDCDREGENIAFEVVD 138
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A835RPK4_VANPL (DNA topoisomerase n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RPK4_VANPL) HSP 1 Score: 157 bits (398), Expect = 5.310e-46 Identity = 78/133 (58.65%), Postives = 102/133 (76.69%), Query Frame = 1 Query: 82 IKAINVAEKPSVAKELANILG--GGNSRRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 I+ +NVAEKPSVAK +A IL GG R RQG+S++N IFEFE C + GQ M +TSVTGHLME+EF + + K W +C P +L+ AP+ ++V +DK D+++ L +EAR CQWLVLWLDCDREGENIA+EV+E Sbjct: 7 IRVLNVAEKPSVAKSVAEILSRSGGGMRSRQGRSRFNRIFEFEYC-IGGQPCHMLMTSVTGHLMELEFDDRFRK-WHSCDPADLYHAPVRKHVPQDKLDIKRTLEEEARMCQWLVLWLDCDREGENIAFEVVE 137
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A482SFN5_9ARCH (Type IA DNA topoisomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SFN5_9ARCH) HSP 1 Score: 159 bits (403), Expect = 3.130e-45 Identity = 77/132 (58.33%), Postives = 100/132 (75.76%), Query Frame = 1 Query: 79 VIKAINVAEKPSVAKELANILGGGNSRRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 ++K + VAEKPSVAKELA +LGGG RR G S+YN +FE N S Q + ITSV+GHLME+EF +P K W++C PVELFTAP+ ++VK++ +D++K LV EA+ CQ L LWLDCD EGENIA+EVI+ Sbjct: 1 MVKVLCVAEKPSVAKELARVLGGGGESRRDGCSKYNAVFEIPNGSFRNQPAHLVITSVSGHLMELEF-DPAFKSWSSCSPVELFTAPVHKHVKKENEDIKKTLVREAKHCQVLFLWLDCDSEGENIAFEVIK 131
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A453IUH3_AEGTS (DNA topoisomerase n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453IUH3_AEGTS) HSP 1 Score: 155 bits (393), Expect = 1.600e-44 Identity = 74/128 (57.81%), Postives = 99/128 (77.34%), Query Frame = 1 Query: 91 INVAEKPSVAKELANILGGGNSRRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 +NVAEKPSVAK +A IL G + R G+S+YN +FEF N ++ Q+ M +TSVTGHLME++F + Y +RW +C P ELF AP+ + V +DK+D+++ L +EAR CQWLVLWLDCDREGENIAYEV++ Sbjct: 1 LNVAEKPSVAKSVAEILSRGGMQSRAGRSRYNRVFEF-NYAIGAQACHMLVTSVTGHLMELDFDDRY-RRWYSCDPAELFHAPVRKAVPQDKQDIKRTLEEEARTCQWLVLWLDCDREGENIAYEVVD 126
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A4D9CZ97_9STRA (DNA topoisomerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ97_9STRA) HSP 1 Score: 164 bits (415), Expect = 5.860e-44 Identity = 82/136 (60.29%), Postives = 102/136 (75.00%), Query Frame = 1 Query: 73 MAVIKAINVAEKPSVAKELANILGGGNS--RRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 MA +K +NVAEKPSVAKE++ IL GGN RRRQG S YNPI+EF C + G+ V M TSV GHL+E+EF EPY K W AC+P +LFT P+ + V +DK+ LE+ L EAR CQ L+LWLDCD EGENIA+EV++ Sbjct: 1 MAPVKVLNVAEKPSVAKEISAILSGGNRAPRRRQGGSDYNPIWEF-GCQIRGELVDMVFTSVRGHLLEMEFVEPYCKNWHACRPGDLFTIPVEKKVGKDKEGLERCLKSEARACQRLILWLDCDLEGENIAFEVMD 135
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A834GAH9_RHOSS (DNA topoisomerase n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GAH9_RHOSS) HSP 1 Score: 159 bits (403), Expect = 8.140e-44 Identity = 76/132 (57.58%), Postives = 102/132 (77.27%), Query Frame = 1 Query: 82 IKAINVAEKPSVAKELANILG-GGNSRRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 I+ +NVAEKPSVAK +A IL GG R R+G+S++N IFEF ++ GQ M TSVTGHLME++F + Y K W +C P++L+ AP+++YV EDK D+++ L +E+R CQWLVLWLDCDREGENIA+EV+E Sbjct: 8 IRVLNVAEKPSVAKAVAGILSQGGGMRVREGRSRFNKIFEF-GYTIRGQQCQMLFTSVTGHLMELDFDDRYRK-WHSCDPIQLYRAPVVKYVPEDKLDIKRTLEEESRNCQWLVLWLDCDREGENIAFEVVE 137
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Match: A0A5N5K7Y2_9ROSI (DNA topoisomerase n=4 Tax=Salix TaxID=40685 RepID=A0A5N5K7Y2_9ROSI) HSP 1 Score: 157 bits (398), Expect = 1.120e-43 Identity = 76/132 (57.58%), Postives = 101/132 (76.52%), Query Frame = 1 Query: 79 VIKAINVAEKPSVAKELANILGGGNSRRRQGKSQYNPIFEFENCSMMGQSVSMKITSVTGHLMEIEFAEPYGKRWAACQPVELFTAPIIRYVKEDKKDLEKQLVDEARGCQWLVLWLDCDREGENIAYEVIE 474 +IK +NVAEKPSVAK +A IL R R+G+S++N IFEF N S+ GQ M +TSVTGHLME++F + + K W +C P +L+TAP+ ++V EDK D+++ L +EAR C WLVLWLDCDREGENIA+EV+E Sbjct: 1 MIKVLNVAEKPSVAKSVATILSRNQLRVREGRSRHNKIFEF-NYSINGQQCHMLVTSVTGHLMEVDFEDRFRK-WHSCDPADLYTAPVRKHVPEDKLDIKRTLEEEARKCHWLVLWLDCDREGENIAFEVME 130 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2144.6554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2144.6554.1 >prot_L-elsbetiae_contig2144.6554.1 ID=prot_L-elsbetiae_contig2144.6554.1|Name=mRNA_L-elsbetiae_contig2144.6554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp GHSRVPGGKRGACRGRLACGEGERMAVIKAINVAEKPSVAKELANILGGGback to top mRNA from alignment at L-elsbetiae_contig2144:7464..9988+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2144.6554.1 ID=mRNA_L-elsbetiae_contig2144.6554.1|Name=mRNA_L-elsbetiae_contig2144.6554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2525bp|location=Sequence derived from alignment at L-elsbetiae_contig2144:7464..9988+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2144:7464..9988+ >mRNA_L-elsbetiae_contig2144.6554.1 ID=mRNA_L-elsbetiae_contig2144.6554.1|Name=mRNA_L-elsbetiae_contig2144.6554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig2144:7464..9988+ (Laminarionema elsbetiae ELsaHSoW15)back to top |