mRNA_L-elsbetiae_contig2144.6553.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2144.6553.1
Unique NamemRNA_L-elsbetiae_contig2144.6553.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2144.6553.1 vs. uniprot
Match: A0A6H5JW94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW94_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.310e-6
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 2 
Query:    5 NVVSKRCTHPGCTKIPSFGKAGSK-AEYCSGHAKDGML 115
            NVV KRC HPGCTK PSFG AGSK AE+C  HAK  M+
Sbjct:    3 NVVDKRCGHPGCTKKPSFGTAGSKRAEFCCPHAKQDMV 40
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BLAST of mRNA_L-elsbetiae_contig2144.6553.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 1.270e-5
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 2 
Query:    2 VNVVSKRCTHPGCTKIPSFGKAGSK-AEYCSGHAKDGML 115
            V+VVSKRC HPGCTK PS+G  GSK AE C+ HA  GM+
Sbjct:    2 VDVVSKRCGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_L-elsbetiae_contig2144.6553.1 vs. uniprot
Match: D8LMB1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB1_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.930e-5
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2 
Query:    2 VNVVSKRCTHPGCTKIPSFGKAGSKA-EYCSGHAKDGM 112
            V+VV++RC HPGCTK PSFG+ GSK  E+C+ HA  GM
Sbjct:    2 VDVVNRRCRHPGCTKRPSFGQDGSKKQEFCAQHAHQGM 39
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BLAST of mRNA_L-elsbetiae_contig2144.6553.1 vs. uniprot
Match: D7FSL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL7_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 3.480e-5
Identity = 26/38 (68.42%), Postives = 28/38 (73.68%), Query Frame = 2 
Query:    2 VNVVSKRCTHPGCTKIPSFGKAGSKA-EYCSGHAKDGM 112
            +NV SKRC HPGCTK PSFG  GSK  E+CS HAK  M
Sbjct:    2 INVYSKRCGHPGCTKRPSFGTTGSKRPEFCSQHAKQDM 39
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2144.6553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JW94_9PHAE1.310e-671.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUJ6_ECTSI1.270e-566.67EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LMB1_ECTSI2.930e-563.16EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FSL7_ECTSI3.480e-568.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2144contigL-elsbetiae_contig2144:74..2109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1410
Cds size915
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2144.6553.1prot_L-elsbetiae_contig2144.6553.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2144 183..1723 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.1418712-UTR-L-elsbetiae_contig2144:73..1821622815876.1418712-UTR-L-elsbetiae_contig2144:73..182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2144 74..182 +
1691683161.857071-UTR-L-elsbetiae_contig2144:73..1821691683161.857071-UTR-L-elsbetiae_contig2144:73..182Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2144 74..182 +
1622815876.1794832-UTR-L-elsbetiae_contig2144:1723..21091622815876.1794832-UTR-L-elsbetiae_contig2144:1723..2109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2144 1724..2109 +
1691683161.8993917-UTR-L-elsbetiae_contig2144:1723..21091691683161.8993917-UTR-L-elsbetiae_contig2144:1723..2109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2144 1724..2109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.1517537-CDS-L-elsbetiae_contig2144:182..10321622815876.1517537-CDS-L-elsbetiae_contig2144:182..1032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2144 183..1032 +
1691683161.8675687-CDS-L-elsbetiae_contig2144:182..10321691683161.8675687-CDS-L-elsbetiae_contig2144:182..1032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2144 183..1032 +
1622815876.163295-CDS-L-elsbetiae_contig2144:1658..17231622815876.163295-CDS-L-elsbetiae_contig2144:1658..1723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2144 1659..1723 +
1691683161.8858721-CDS-L-elsbetiae_contig2144:1658..17231691683161.8858721-CDS-L-elsbetiae_contig2144:1658..1723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2144 1659..1723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2144.6553.1

>prot_L-elsbetiae_contig2144.6553.1 ID=prot_L-elsbetiae_contig2144.6553.1|Name=mRNA_L-elsbetiae_contig2144.6553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=305bp
MLDVVSRRCGHPGCIKGSLYGTAGGKAEYCSGHAKDGMMDVVSRRCGHPG
CTKRPTFGKAGSKLVEYCCGHAKDGMVNVTSQKCTHPGCIKRPSFGTAGS
KAEYCSGHAKDGMVDVVSRRCGHPGCTKRPTFGKAGSKGGYCCGHAKDGM
VNVVSKRCAYPGCTTRANYGEEGNFCVRHAGEGRVFSPYSKRRSSGDGNG
SDRPGSVGSGAREDNISSSMSMKTTKRATDMGDLRPIRVKRERGESNRTD
EDESRAWSEPDGGIMKTEGMEIPYKKVEPTEAAGGTEVNMRKRRKTAGGN
RRGS*
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mRNA from alignment at L-elsbetiae_contig2144:74..2109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2144.6553.1 ID=mRNA_L-elsbetiae_contig2144.6553.1|Name=mRNA_L-elsbetiae_contig2144.6553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2036bp|location=Sequence derived from alignment at L-elsbetiae_contig2144:74..2109+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGAACGTTGTCAGCAAGAGATGCACACATCCAGGCTGCACCAAGATCC
CGTCATTCGGCAAGGCTGGCAGCAAGGCAGAGTACTGCTCTGGCCATGCT
AAGGACGGGATGTTGGACGTTGTCAGCAGGAGATGCGGTCATCCAGGCTG
CATCAAGGGGTCGTTATACGGCACGGCTGGCGGCAAGGCAGAGTACTGCT
CTGGCCATGCGAAGGACGGGATGATGGACGTCGTCAGCAGGAGGTGCGGC
CATCCAGGCTGCACCAAACGGCCGACATTCGGCAAGGCTGGCAGCAAGCT
AGTAGAGTACTGCTGTGGCCATGCGAAGGACGGGATGGTGAACGTCACCA
GTCAGAAATGCACACATCCAGGCTGCATCAAGCGGCCGTCATTCGGCACG
GCTGGCAGCAAGGCAGAGTACTGCTCTGGCCATGCGAAGGACGGGATGGT
GGACGTTGTCAGCAGGAGGTGCGGCCATCCAGGCTGCACCAAACGGCCGA
CATTCGGCAAGGCTGGGAGCAAGGGAGGGTACTGCTGTGGCCATGCGAAG
GACGGTATGGTGAACGTCGTCAGCAAAAGATGCGCCTATCCTGGTTGCAC
CACGAGGGCCAACTACGGCGAGGAAGGTAACTTCTGTGTACGGCACGCAG
GGGAAGGCAGGGTGTTTTCCCCTTATTCCAAGCGCAGATCTAGCGGTGAC
GGCAACGGGAGTGACAGGCCTGGGAGTGTTGGCTCGGGCGCAAGAGAGGA
TAACATTTCCTCCAGCATGAGCATGAAGACGACGAAGCGAGCTACTGACA
TGGGAGATTTACGCCCAATTCGAGTGAAGAGAGAACGCGGTGAAAGCAAC
AGGACGGACGAAGACGAATCTAGGGCATGGTCGGAGCCAGATGGTGGTAT
AATGAAGACAGAAGGCATGGAGATACCCTATAAAAAAGTGGAACCTACGG
AAGCTGCAGGTACGTTTCAGATCTTGACTCGTCGCCGTGTATTGCCCCGT
GGCGGGTGCTTGAAGTGGGCAGAGGAAAATGGATCGGATGGGTGGAATTA
GGAGCGGTTAGTAGCCATGCACACGGCGAACAAAGATCGTAGCCGTGAGG
GCTCGATTTCGTACCTCGATCTCATCTGTTGCGCGGTATTTTGAAGGCGC
GTAGAGTATAGACTACCATTTGGTCCCGTAATCATGGAGAGGACTGGCTG
TTCCACCAAATCTCTCCGTTTACCATGGTAAAGCCAATCAACAACAAAAC
AACGACAACACCCAGTGTTTTTCGTGAGAGCCTGTGAATCCCTCGTTGGT
CCATGTGTCCACTCGCATCAGAGCTCCCCGGTCTGGTGTTCTATTTCAAC
CTGCGTATTCTTCTGCCGTTAGATGGGTTTTCGCTCAGCCTGTACACATA
TTTACTGCTCAAAAATTAACACGACACTCTTGGTTTTACATATACTACAT
ACATAAAAAGCATCAAACCTGGGGTCGACGTTTCCCTAAAGTTGTCGTTC
GCCTTCGGCGCTTTTGTCGCCGCCCCGATTGTTTCACCTATCGTATGTGT
TTCCTCTTCATCGCGCCCCCCCTCGATCATTCCAGGAGGGACCGAGGTAA
ATATGAGAAAGAGGAGAAAAACCGCGGGGGGGAACCGACGAGGTTCCTGA
TACTTCACAAGCATGACAGCAGGAGTGGCTGCGTACAATCAGCCAGAAAA
AAGTTCTGGGCACCCGCTGAGCTCGAAGGAATGACAGGGGGGAGTAGCAG
CAGCAGTGTAGTGTGGGTATGGTGGGTCGTGCCGAGATGGCCACAGATGG
CTGCAGAGAGCGAGACAGCTGTGGCGATGCTGTGCGATACGCGATGCTTG
CTGACGCTGTCGCTGAGAGCGTGTTGTTTTGCGTCAACAAGCTGTTGTTT
GTTTGAATGCCTCTCTGATGGCCATTGTGCCACAACAGCATGTGTTTCGT
ATTTCAATTCATCAACGTGTTGTTTGTTCAAGTTTTTAAAGTTTGTTTTG
GGAATAGCGCCGCTCTGTCTTGAGGGTGAACGTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2144:74..2109+

>mRNA_L-elsbetiae_contig2144.6553.1 ID=mRNA_L-elsbetiae_contig2144.6553.1|Name=mRNA_L-elsbetiae_contig2144.6553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1830bp|location=Sequence derived from alignment at L-elsbetiae_contig2144:74..2109+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGGACGTTGTCAGCAGGAGATGCGGTCATCCAGGCTGCATCAAGGG
GTCGTTATACGGCACGGCTGGCGGCAAGGCAGAGTACTGCTCTGGCCATG
CGAAGGACGGGATGATGGACGTCGTCAGCAGGAGGTGCGGCCATCCAGGC
TGCACCAAACGGCCGACATTCGGCAAGGCTGGCAGCAAGCTAGTAGAGTA
CTGCTGTGGCCATGCGAAGGACGGGATGGTGAACGTCACCAGTCAGAAAT
GCACACATCCAGGCTGCATCAAGCGGCCGTCATTCGGCACGGCTGGCAGC
AAGGCAGAGTACTGCTCTGGCCATGCGAAGGACGGGATGGTGGACGTTGT
CAGCAGGAGGTGCGGCCATCCAGGCTGCACCAAACGGCCGACATTCGGCA
AGGCTGGGAGCAAGGGAGGGTACTGCTGTGGCCATGCGAAGGACGGTATG
GTGAACGTCGTCAGCAAAAGATGCGCCTATCCTGGTTGCACCACGAGGGC
CAACTACGGCGAGGAAGGTAACTTCTGTGTACGGCACGCAGGGGAAGGCA
GGGTGTTTTCCCCTTATTCCAAGCGCAGATCTAGCGGTGACGGCAACGGG
AGTGACAGGCCTGGGAGTGTTGGCTCGGGCGCAAGAGAGGATAACATTTC
CTCCAGCATGAGCATGAAGACGACGAAGCGAGCTACTGACATGGGAGATT
TACGCCCAATTCGAGTGAAGAGAGAACGCGGTGAAAGCAACAGGACGGAC
GAAGACGAATCTAGGGCATGGTCGGAGCCAGATGGTGGTATAATGAAGAC
AGAAGGCATGGAGATACCCTATAAAAAAGTGGAACCTACGGAAGCTGCAG
ATGTTGGACGTTGTCAGCAGGAGATGCGGTCATCCAGGCTGCATCAAGGG
GTCGTTATACGGCACGGCTGGCGGCAAGGCAGAGTACTGCTCTGGCCATG
CGAAGGACGGGATGATGGACGTCGTCAGCAGGAGGTGCGGCCATCCAGGC
TGCACCAAACGGCCGACATTCGGCAAGGCTGGCAGCAAGCTAGTAGAGTA
CTGCTGTGGCCATGCGAAGGACGGGATGGTGAACGTCACCAGTCAGAAAT
GCACACATCCAGGCTGCATCAAGCGGCCGTCATTCGGCACGGCTGGCAGC
AAGGCAGAGTACTGCTCTGGCCATGCGAAGGACGGGATGGTGGACGTTGT
CAGCAGGAGGTGCGGCCATCCAGGCTGCACCAAACGGCCGACATTCGGCA
AGGCTGGGAGCAAGGGAGGGTACTGCTGTGGCCATGCGAAGGACGGTATG
GTGAACGTCGTCAGCAAAAGATGCGCCTATCCTGGTTGCACCACGAGGGC
CAACTACGGCGAGGAAGGTAACTTCTGTGTACGGCACGCAGGGGAAGGCA
GGGTGTTTTCCCCTTATTCCAAGCGCAGATCTAGCGGTGACGGCAACGGG
AGTGACAGGCCTGGGAGTGTTGGCTCGGGCGCAAGAGAGGATAACATTTC
CTCCAGCATGAGCATGAAGACGACGAAGCGAGCTACTGACATGGGAGATT
TACGCCCAATTCGAGTGAAGAGAGAACGCGGTGAAAGCAACAGGACGGAC
GAAGACGAATCTAGGGCATGGTCGGAGCCAGATGGTGGTATAATGAAGAC
AGAAGGCATGGAGATACCCTATAAAAAAGTGGAACCTACGGAAGCTGCAG
GAGGGACCGAGGTAAATATGAGAAAGAGGAGAAAAACCGCGGGGGGGAAC
CGACGAGGTTCCTGAGAGGGACCGAGGTAAATATGAGAAAGAGGAGAAAA
ACCGCGGGGGGGAACCGACGAGGTTCCTGA
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