mRNA_L-elsbetiae_contig21435.6551.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21435.6551.1
Unique NamemRNA_L-elsbetiae_contig21435.6551.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21435.6551.1 vs. uniprot
Match: D8LH71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH71_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 3.180e-43
Identity = 88/122 (72.13%), Postives = 97/122 (79.51%), Query Frame = 1 
Query:    1 RPAQATPRRSDRSVTRRESVGEQVGFDDSQSVDEPQETRRTLGDRETPDKTTELPAPTHAAKTKK-SGPRARIPWTEDEVKHLKAAVMALGKGKWTLALAHYKFNPCRTAVDLKDKWRNLSK 363
            RP +A  RRS +SVTRRES GEQV FDDSQSVDEPQE R  LGDR +P K   LP+ +   K KK SGPR R PWTE+EVKHLKAAVMALG+GKW+LALA YKF  CRTAVDLKDKWRNL+K
Sbjct:  351 RPGRAPSRRSGKSVTRRESRGEQVDFDDSQSVDEPQEARAALGDRPSPAKAAALPSASGKVKAKKRSGPRTRHPWTEEEVKHLKAAVMALGRGKWSLALAQYKFQDCRTAVDLKDKWRNLTK 472
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BLAST of mRNA_L-elsbetiae_contig21435.6551.1 vs. uniprot
Match: A0A2V3J0U8_9FLOR (Telomere repeat-binding factor 5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0U8_9FLOR)

HSP 1 Score: 62.4 bits (150), Expect = 6.050e-7
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:  193 KSGPRARIPWTEDEVKHLKAAVMALGKGKWTLALAHY--KFNPCRTAVDLKDKWRNLSKA*KV 375
            KS    RI WTE EV+ L++ V   G+G+W + L     +F+P R +VDLKDKWRNLSK+ K+
Sbjct:  113 KSRRHKRIKWTEGEVQALRSGVQKHGEGRWAVILRENADRFHPVRISVDLKDKWRNLSKSNKI 175
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BLAST of mRNA_L-elsbetiae_contig21435.6551.1 vs. uniprot
Match: L1JWB7_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JWB7_GUITC)

HSP 1 Score: 60.1 bits (144), Expect = 2.750e-6
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:  214 IPWTEDEVKHLKAAVMALGKGKWTLALAHYKFNPCRTAVDLKDKWRNLSK 363
            I WT +E + L+  +   G  KWT+ L+++ F+P R+AVDLKDKWRNL K
Sbjct:  565 IRWTAEEEETLRKGIERYGPSKWTMILSNFDFHPSRSAVDLKDKWRNLQK 614
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BLAST of mRNA_L-elsbetiae_contig21435.6551.1 vs. uniprot
Match: A9V2S9_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V2S9_MONBE)

HSP 1 Score: 57.8 bits (138), Expect = 1.750e-5
Identity = 34/68 (50.00%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  160 LPAPTHAAKTKKSGPRARIPWTEDEVKHLKAAVMALGKGKWTLALAHYKFNPCRTAVDLKDKWRNLSK 363
            LP+PT  A+ +    RAR  WTE+E   L+  V   GK KW    AHY F   RT VDLKDKWRN+S+
Sbjct:  859 LPSPT--ARRRAGATRARRAWTEEEEMMLEEGVAKFGK-KWRAIQAHYDFKD-RTNVDLKDKWRNMSR 922
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BLAST of mRNA_L-elsbetiae_contig21435.6551.1 vs. uniprot
Match: A0A0A9B5Y4_ARUDO (Uncharacterized protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9B5Y4_ARUDO)

HSP 1 Score: 53.5 bits (127), Expect = 1.890e-5
Identity = 34/83 (40.96%), Postives = 39/83 (46.99%), Query Frame = 1 
Query:  220 WTEDEVKHLKAAVMALGKGKWTLALAHYKFNPCRTAVDLKDKWRNLSKA*K-------VLSCPPKL*ERGVMLLGSFSQPQTR 447
            WT  EVK L   V  LG G W+     Y     RTAV LKDKWRNL KA +       +L   P L ER   L   +  P+ R
Sbjct:   30 WTAKEVKSLVQGVSKLGVGPWSKLKKKYFKTSIRTAVHLKDKWRNLLKAYEGNVIKDMLLDLEPPLVERIRQLAAKYPYPKNR 112
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BLAST of mRNA_L-elsbetiae_contig21435.6551.1 vs. uniprot
Match: UPI001ABC35F9 (uncharacterized protein LOC123180688 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001ABC35F9)

HSP 1 Score: 54.3 bits (129), Expect = 3.430e-5
Identity = 29/60 (48.33%), Postives = 32/60 (53.33%), Query Frame = 1 
Query:  187 TKKSGPRARIPWTEDEVKHLKAAVMALGKGKWTLALAHYKFNPCRTAVDLKDKWRNLSKA 366
            TK  G +    WT DEV  L   +   G+GKWT     Y     RTAV LKDKWRNL KA
Sbjct:   87 TKSRGRKNNERWTPDEVTILLKGIRRYGEGKWTKVKKWYFRKSVRTAVHLKDKWRNLRKA 146
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BLAST of mRNA_L-elsbetiae_contig21435.6551.1 vs. uniprot
Match: A0A161Y726_DAUCS (Uncharacterized protein n=4 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y726_DAUCS)

HSP 1 Score: 56.2 bits (134), Expect = 5.010e-5
Identity = 33/67 (49.25%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:  178 AAKTKKSGPRAR---IPWTEDEVKHLKAAVMALGKGKWT-LALAHYKFNPCRTAVDLKDKWRNLSKA 366
            AAKT KS    R   IPW+ +EV  L   V   G GKWT +    +  +P R+AVDLKDKWRNL +A
Sbjct:  426 AAKTHKSNNSKRQRHIPWSHEEVLQLVNGVSKHGVGKWTDIKKVSFPLSPHRSAVDLKDKWRNLVRA 492
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21435.6551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LH71_ECTSI3.180e-4372.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2V3J0U8_9FLOR6.050e-749.21Telomere repeat-binding factor 5 n=1 Tax=Gracilari... [more]
L1JWB7_GUITC2.750e-650.00Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A9V2S9_MONBE1.750e-550.00Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A0A9B5Y4_ARUDO1.890e-540.96Uncharacterized protein n=1 Tax=Arundo donax TaxID... [more]
UPI001ABC35F93.430e-548.33uncharacterized protein LOC123180688 n=1 Tax=Triti... [more]
A0A161Y726_DAUCS5.010e-549.25Uncharacterized protein n=4 Tax=Daucus carota subs... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21435contigL-elsbetiae_contig21435:161..1761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.9
Seed ortholog evalue5.9e-08
Seed eggNOG ortholog10224.XP_006817502.1
Preferred nameTERF2
KEGG koko:K11111
KEGG ModuleM00424
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000228,GO:0000723,GO:0000781,GO:0000782,GO:0000783,GO:0000784,GO:0000981,GO:0001673,GO:0001701,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003691,GO:0003697,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006275,GO:0006282,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007568,GO:0007569,GO:0008022,GO:0008088,GO:0008089,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0010970,GO:0016043,GO:0016233,GO:0016604,GO:0019219,GO:0019222,GO:0019899,GO:0030705,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031627,GO:0031848,GO:0031974,GO:0031981,GO:0032069,GO:0032074,GO:0032200,GO:0032204,GO:0032205,GO:0032206,GO:0032207,GO:0032208,GO:0032210,GO:0032211,GO:0032213,GO:0032214,GO:0032501,GO:0032502,GO:0032768,GO:0032770,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033262,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0042162,GO:0042592,GO:0042802,GO:0042803,GO:0043009,GO:0043047,GO:0043073,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043565,GO:0044087,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045738,GO:0045786,GO:0045910,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046907,GO:0046983,GO:0048239,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050999,GO:0051000,GO:0051052,GO:0051053,GO:0051054,GO:0051093,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051276,GO:0051336,GO:0051341,GO:0051346,GO:0051353,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060249,GO:0060255,GO:0061820,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070187,GO:0070198,GO:0070727,GO:0071704,GO:0071840,GO:0072695,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090342,GO:0090344,GO:0090398,GO:0090657,GO:0097159,GO:0098505,GO:0098687,GO:0098847,GO:0098930,GO:0099111,GO:0140110,GO:1901360,GO:1901363,GO:1902576,GO:1903506,GO:1903516,GO:1903517,GO:1903770,GO:1903824,GO:1904353,GO:1904354,GO:1904356,GO:1904357,GO:1904429,GO:1904430,GO:1904533,GO:1904534,GO:1905777,GO:1905778,GO:1905838,GO:1905839,GO:2000104,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2000772,GO:2000773,GO:2001020,GO:2001021,GO:2001141,GO:2001251,GO:2001252
EggNOG free text desc.negative regulation of telomere maintenance via recombination
EggNOG OGs2A93T@1,2RYHN@2759,38WTW@33154,3BAS9@33208,3CT4T@33213
COG Functional cat.K
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko03032
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-24_000790.1
Exons3
Model size1017
Cds size369
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21435.6551.1prot_L-elsbetiae_contig21435.6551.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21435 809..1761 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.04212-UTR-L-elsbetiae_contig21435:160..8081622815876.04212-UTR-L-elsbetiae_contig21435:160..808Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21435 161..808 -
1691683161.8023362-UTR-L-elsbetiae_contig21435:160..8081691683161.8023362-UTR-L-elsbetiae_contig21435:160..808Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21435 161..808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815876.0520484-CDS-L-elsbetiae_contig21435:808..10361622815876.0520484-CDS-L-elsbetiae_contig21435:808..1036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21435 809..1036 -
1691683161.814779-CDS-L-elsbetiae_contig21435:808..10361691683161.814779-CDS-L-elsbetiae_contig21435:808..1036Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21435 809..1036 -
1622815876.0620203-CDS-L-elsbetiae_contig21435:1197..12691622815876.0620203-CDS-L-elsbetiae_contig21435:1197..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21435 1198..1269 -
1691683161.8248386-CDS-L-elsbetiae_contig21435:1197..12691691683161.8248386-CDS-L-elsbetiae_contig21435:1197..1269Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21435 1198..1269 -
1622815876.0725317-CDS-L-elsbetiae_contig21435:1692..17611622815876.0725317-CDS-L-elsbetiae_contig21435:1692..1761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21435 1693..1761 -
1691683161.8344805-CDS-L-elsbetiae_contig21435:1692..17611691683161.8344805-CDS-L-elsbetiae_contig21435:1692..1761Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21435 1693..1761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21435.6551.1

>prot_L-elsbetiae_contig21435.6551.1 ID=prot_L-elsbetiae_contig21435.6551.1|Name=mRNA_L-elsbetiae_contig21435.6551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
RPAQATPRRSDRSVTRRESVGEQVGFDDSQSVDEPQETRRTLGDRETPDK
TTELPAPTHAAKTKKSGPRARIPWTEDEVKHLKAAVMALGKGKWTLALAH
YKFNPCRTAVDLKDKWRNLSKA*
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mRNA from alignment at L-elsbetiae_contig21435:161..1761-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21435.6551.1 ID=mRNA_L-elsbetiae_contig21435.6551.1|Name=mRNA_L-elsbetiae_contig21435.6551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1601bp|location=Sequence derived from alignment at L-elsbetiae_contig21435:161..1761- (Laminarionema elsbetiae ELsaHSoW15)
AGACCTGCACAAGCTACGCCGAGGAGGAGCGACAGATCGGTCACACGACG
CGAATCTGTGGGCGAGCAGGTAAGATCTGCAGTATGTAGCTTGTGTAGTT
GAGTTCGGATGACAGTGTGTGCTGCTCTTCGCTTCTCGCGAAGAGCGGGC
CGAATCGATTGCATGTGACCCAAAAGTGGTTGCAGTGACATCTGCGTGGT
TTCTCGATCGGGACCTCTTCAAAGACCGTGGGACAAACCACCAAGACTAT
CCAACAACTGGGTTTAACTTTTCTCAGTAGTTCCAATTGTTTCAAACGAA
CGCCGAATGCTTGAAAGTGCAAGCCTTGCCTTTTTAGTGCGACGAATTGT
GTTGATGGCCTACTGCTGCACTCCCACATGCTTCGAGCACCAAGTCCGCA
TTCAGGCGGAGGCCAGTTGTCAACGTTATACCCCTGTTTTGCCCCGATTG
CTCTTGATGCCCACCGTATTTGCCCCGGCGCTCTCTGAGAAGGTGGGCTT
CGACGACTCGCAGAGCGTCGACGAGCCGCAGGAAACACGGCGTACTCTGG
GTGACCGCGAAACGGTGAGCCTATCCGTTGTTCACTTTGTTTTGAGCTAC
TTGCAAGATGTCACTTTTTGCTGTAACGAGCTGTACATCACAACAGAGCA
AATTATTTTGCGACGAGCTTTGCATATCGACTTTATGTTTTTTGTTCACG
CGTCTGTCGTTCCCCTGTGTCACAGCCGGACAAAACGACCGAGCTGCCCG
CACCCACCCACGCGGCAAAGACCAAGAAAAGTGGGCCAAGAGCTCGCATC
CCCTGGACCGAGGACGAGGTGAAGCATCTCAAAGCTGCAGTAATGGCATT
GGGGAAAGGGAAATGGACCCTCGCTCTGGCCCACTACAAGTTCAACCCTT
GCCGGACCGCCGTTGACCTGAAAGACAAATGGCGCAACCTTTCGAAGGCC
TGAAAAGTGCTATCTTGTCCCCCCAAGCTGTGAGAAAGGGGGGTCATGTT
GCTAGGCAGCTTTTCGCAACCACAGACTCGCTGTTACTACCGCTGTGGGG
TGCTCTTCACAATACATAAGAGTGCATTCCTCTTCGTTGGCTGTCGCAGC
GTTTCCTGCTGGCGTTATTTTTGTGGGCGATACGAGGTTATTTGGTCCTA
TTTGTAGCGTATGCGATCAACAACCCACGTGATCCCTTCTTTCAGTGTCG
AGCGACTGCCAGGCTGCGAGTGGGCCGCGTTCTGCGGTTAGGTGTTCTCC
TTCATTCAGAGTAGGTGGAGCTGTAGGCTGGACGTTTTCATCTCTGTTTC
TGCGGCTGCTTCGAATCCAGCGGTTCTAGGGATAGAGGGATCCGGTGAAA
AGTTTTTTTGTCGATGGAGTTTCTATTCTCTACAGAATCCTGGGAAAATC
GTGTCTTCTGACTACCTGTTGTCACCTTGACTGACGAAGAGAGAAAAGGG
AGAGAGATGGATCCGCCGACCGATTTGATCAGAATGATGGCTGTCTTTTT
ATAGTTCATACCGCAGCCTTAAGGCTACGGGTAGGGGGGGGGGCACAATG
TACTTTGGATCCAGGGGCTCAGTGATTAGCACGATTGACTGAATGTTTTA
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21435:161..1761-

>mRNA_L-elsbetiae_contig21435.6551.1 ID=mRNA_L-elsbetiae_contig21435.6551.1|Name=mRNA_L-elsbetiae_contig21435.6551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig21435:161..1761- (Laminarionema elsbetiae ELsaHSoW15)
AGACCTGCACAAGCTACGCCGAGGAGGAGCGACAGATCGGTCACACGACG
CGAATCTGTGGGCGAGCAGAGACCTGCACAAGCTACGCCGAGGAGGAGCG
ACAGATCGGTCACACGACGCGAATCTGTGGGCGAGCAGGTGGGCTTCGAC
GACTCGCAGAGCGTCGACGAGCCGCAGGAAACACGGCGTACTCTGGGTGA
CCGCGAAACGGTGGGCTTCGACGACTCGCAGAGCGTCGACGAGCCGCAGG
AAACACGGCGTACTCTGGGTGACCGCGAAACGCCGGACAAAACGACCGAG
CTGCCCGCACCCACCCACGCGGCAAAGACCAAGAAAAGTGGGCCAAGAGC
TCGCATCCCCTGGACCGAGGACGAGGTGAAGCATCTCAAAGCTGCAGTAA
TGGCATTGGGGAAAGGGAAATGGACCCTCGCTCTGGCCCACTACAAGTTC
AACCCTTGCCGGACCGCCGTTGACCTGAAAGACAAATGGCGCAACCTTTC
GAAGGCCTGACCGGACAAAACGACCGAGCTGCCCGCACCCACCCACGCGG
CAAAGACCAAGAAAAGTGGGCCAAGAGCTCGCATCCCCTGGACCGAGGAC
GAGGTGAAGCATCTCAAAGCTGCAGTAATGGCATTGGGGAAAGGGAAATG
GACCCTCGCTCTGGCCCACTACAAGTTCAACCCTTGCCGGACCGCCGTTG
ACCTGAAAGACAAATGGCGCAACCTTTCGAAGGCCTGA
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