mRNA_L-elsbetiae_contig214.6540.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig214.6540.1 vs. uniprot
Match: A0A6H5JK16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK16_9PHAE) HSP 1 Score: 371 bits (952), Expect = 2.420e-105 Identity = 407/877 (46.41%), Postives = 476/877 (54.28%), Query Frame = 1 Query: 637 GVPKRESRMWPQATGSREAEASARGEDVVRGASEAGPTAASGKGGLASSILGSGTWKKAYAAAANATXXXXXXXVNSDLAANVAASFG--AAGGGLRASSAGHQPGGSIGGVPDAVKQRRRASSRSGGGGEQAGEAERGEAXXXXXXENVEEEGGE---------------SPPFLTISVGEVSCFLPDVRWSVQMQQKRFLKVGDSGSINVWLEGVSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXLXQXLXSAAPLQP-----------PQPPAVAGRSLPPRTTTA---GSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWSTFNSVSTALSKGTGKLKRRLKASTXXXXXXXXXXXXXXXXXXXXXXXXXSPSDT-FDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASEPFSPSSLA----------SFFNLSFPGDDNEP-----LAFQTVEDFSPTKTAPEGRR-GSGLGGDAETAAEGGDAGDSSPSG-------GFLKVTACSCKVGSIRIEVGGSKHDGLYNFLAKGLGDTIRXXXXXXXXXXXXXXXXXXXXXVNDRVAEVWTGSAPESKKEPVRVICAAVRAQSLVKAKGKTELYVKVRLLQRDGTQLEKRSTAAVGPVTSAAPLPTIAAIAIPTPPNKNNKDKDREADV-----------ARNPCWVGLDNDLSMDLPEEDPAGLSLVFEVWHSGTLANGLIGSTRRIPIKEIEARSPAAAXXXXXXXXXXXXXXXXXXXXXXXXGGQEREAGSSSTLEDP--GTMWLELDSGGNLMVKLGVSGLTARRRRNS--------AVAASEAVHAAFAEGTDSQRIYRRWD 3039 GVP R+SR WP S+E E S+R D G++ G + + GG+A IL SG WK+AY+AA NA VN+DL+A+ AS A GGG+R +R G GG AG+A R + EE G +L+I++G VSCFLP V WSVQ QQKRFL+VGDSG INV LEGVSLSL XXXXXX R L +AAP+ P P VA S PR+ +A G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWST S+STALSKGTGK+KRR KA+ XXXXXXXXXXXXXXXXXX P+ T F + + P + ++ A S LS GD++ L F T +FSP A RR GSGL GD G+AG+ +PSG FLKVTACSCKVGSIRI+V GSKHDG+YNFLAKGLGDTIR +NDR+AE+W+GS P SKK RV+CAAVRAQ L KGKT+LYVKVRL+++DGTQLEKRSTAAVG V ++A A++IP ARNPCWVGLDNDLSM+LPEEDP G+SLVFEVWHSGTLAN L+GSTRR+ + EIE SPA XXXXXXXXXXXXXXXXXXXXXX GG A ++ L+D T+WL+LDSGG LMVKL V G A RRR S + A ++QR RRWD Sbjct: 465 GVPCRKSRTWPVWAESQELETSSRSGDACGGSATEGGESDTNPGGIAGGILSSGVWKRAYSAATNAAATAIA--VNTDLSASATASVANFANGGGVRW-----------------------MGNRVGDGGRDAGDASRRGDTATVEHQEREEMGNSIGVDEEXXXXXXXXXXXXYLSITLGNVSCFLPKVNWSVQTQQKRFLRVGDSGYINVRLEGVSLSLSLDPGAGVCSLFGSSRRPSQTPXXXXXXPVAPRHLP-GTSAAAPVGTSGGDNXXXXXRPLLPFVATSSQAPRSVSAEPSAEGTDGGSVAERGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWSTLKSMSTALSKGTGKIKRRWKATXXXXXXXXXXXXXXXXXXXLQRTGHHQPAPTSFQPASSFFHPPSPIDSSDKSDAFSSSSVPSTSRGRAITPTLPSAATTAAPTPEALPSSRSVPRLSSLGDNDADGGSGSLVFATAAEFSPLAAAAAARRRGSGLEGDD------GEAGEVTPSGISAGGTDEFLKVTACSCKVGSIRIDVDGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFAEEIGKLVEGINDRIAEIWSGSPPVSKK--FRVVCAAVRAQDL--PKGKTDLYVKVRLIKQDGTQLEKRSTAAVGAVATSA------AMSIPXXXXXXXXXXXXXXXXXXXXXXXXXAPARNPCWVGLDNDLSMNLPEEDPDGMSLVFEVWHSGTLANALVGSTRRVTMSEIEPPSPAXXXXXXXXXXXXXXXXXXXXXXXXRDGG----ATPATVLKDSDLNTLWLDLDSGGKLMVKLAVFGRAAHRRRTSFHRPGGXXXXXXXAGIPEAALAAAETQRALRRWD 1295
BLAST of mRNA_L-elsbetiae_contig214.6540.1 vs. uniprot
Match: D8LBX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX5_ECTSI) HSP 1 Score: 367 bits (942), Expect = 4.280e-104 Identity = 427/817 (52.26%), Postives = 491/817 (60.10%), Query Frame = 1 Query: 652 ESRMWPQATGSREAEASARGEDVVRGASEAGPTAASGKGGLASSILGSGTWKKAYAAAANATXXXXXXXVNSDLAANV---AASFGAAGGGLRASSAGHQPGGSIGGVPDAVKQRRRASSRSGGGGEQAGEAER-GEAXXXXXXENVE---------EEGGESP-----PFLTISVGEVSCFLPDVRWSVQMQQKRFLKVGDSGSINVWLEGVSLSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRXLXQXLX---------SAAPLQ--PPQP--PAVAGRSLPPRTTTA---GSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWSTFNSVSTALSKGTGKLKRRLKASTXXXXXXXXXXXXXXXXXXXXXXXXXSPSDTFDRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASE----PFSPSSLASFFNLSFPGDDNEP-----LAFQTVEDFSPTKTAPEGRRGSGLGGDAETAAEGGDAGDSSPSG-GFLKVTACSCKVGSIRIEVGGSKHDGLYNFLAKGLGDTIRXXXXXXXXXXXXXXXXXXXXXVNDRVAEVWTGSAPESKKEPVRVICAAVRAQSLVKAKGKTELYVKVRLLQRDGTQLEKRSTAAVGPVTSAAPLPTIAAIAIPTPPNKNNKDKDREADV-----------ARNPCWVGLDNDLSMDLPEEDPAGLSLVFEVWHSGTLANGLIGSTRRIPIKEIEARSPAAAXXXXXXXXXXXXXXXXXXXXXXXXGGQEREAGSSSTLEDP--GTMWLELDSGGNLMVKLGVS 2931 ++R WP S+E E +RG D G++ G + GG+A ILGSG WKKAY+AA+NA VN+DL+A+ AA+F A GGG+R +R+G GG G+A R G+ E E EEGGE P+L+I+VG VSCFLPDV WSVQMQQKRFL+VGDSG INVWLEGVSLSL XXXXXXXXXX X X X X S Q PP+P P VA S PR+ +A G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWS NS+STALSKGTGK+KRRLKA+ XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXX A+ P + S S +LS GD++ L F T +FSP A RRGSGL GDA A E +G S S GFLKVTACSCKVGSIRIEV GSKHDG+YNFLAKGLGDTIR +NDR+AE+W+GSAP SKK+P R++CAAVRAQ L KGKT+LYVKVRL+++DGTQLEKRSTAAVG V ++A A++IP ARNPCWVGLDNDLSM+LPEEDP LSLVFEVWHSGTLAN L+GSTRR+ + EIE P + XXXXXXXXXXXXXXXXXXXXXX GG A ++ L D T+ L+LDSGG L+V + V+ Sbjct: 492 KTRTWPVRAESQELETGSRGGDASGGSAAEGGEGDTSPGGIAGGILGSGVWKKAYSAASNAAATAIA--VNNDLSASATAAAANF-ANGGGVRW-----------------------MGNRAGDGGRDVGDASRSGDTATVDHQEREEMGDSIGVDEEEGGEREAXXXXPYLSITVGNVSCFLPDVNWSVQMQQKRFLRVGDSGYINVWLEGVSLSLSLDPGAGVDSLFGSSRRPSQTPXXXXXXXXXXXXXXXXXXXXXXXXXGTSGGDNQGAPPRPLFPFVATSSQSPRSVSAEPSAEGIDGGSVAERGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSKWSKLNSMSTALSKGTGKIKRRLKATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPSTSRERAVTPPLPSAATTAATTPEALPSSRSVPHLSILGDNDADGGSGSLVFATAAEFSPLAAAAARRRGSGLEGDAREAGELPPSGISGGSADGFLKVTACSCKVGSIRIEVDGSKHDGIYNFLAKGLGDTIRDAVREAVEKAFAEEIGKLVEGINDRIAEIWSGSAPVSKKKPARLVCAAVRAQGL--PKGKTDLYVKVRLIKKDGTQLEKRSTAAVGAVATSA------AMSIPXXXXXXXXXXXXXXXXXXXXXXXXXAPARNPCWVGLDNDLSMNLPEEDPGRLSLVFEVWHSGTLANALVGSTRRVTMSEIE---PPSXXXXXXXXXXXXXXXXXXXXXXXRDGG----ATPATVLRDSDSNTLRLDLDSGGKLIVSVRVT 1267 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig214.6540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig214.6540.1 >prot_L-elsbetiae_contig214.6540.1 ID=prot_L-elsbetiae_contig214.6540.1|Name=mRNA_L-elsbetiae_contig214.6540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=905bp MGGNTDPGSVWGEGGGGSGSGVMPHQENKLRQRARLIVNRASFSRPLVLPback to top mRNA from alignment at L-elsbetiae_contig214:27135..36748- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig214.6540.1 ID=mRNA_L-elsbetiae_contig214.6540.1|Name=mRNA_L-elsbetiae_contig214.6540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9614bp|location=Sequence derived from alignment at L-elsbetiae_contig214:27135..36748- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig214:27135..36748- >mRNA_L-elsbetiae_contig214.6540.1 ID=mRNA_L-elsbetiae_contig214.6540.1|Name=mRNA_L-elsbetiae_contig214.6540.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5430bp|location=Sequence derived from alignment at L-elsbetiae_contig214:27135..36748- (Laminarionema elsbetiae ELsaHSoW15)back to top |