mRNA_L-elsbetiae_contig21381.6534.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21381.6534.1
Unique NamemRNA_L-elsbetiae_contig21381.6534.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: D7FH69_ECTSI (Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH69_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.540e-26
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCATE+AGSCHGGTHTG++EYASNNP+PF+TCQ Y+A DN C  IGKCKTC
Sbjct:  123 QVILNCATEVAGSCHGGTHTGTYEYASNNPVPFDTCQNYQAEDNTCDAIGKCKTC 177
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: A0A6H5J6W1_9PHAE (Cathepsin X n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.140e-25
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCATE+AGSC+GGTHTG++EYASNNP+PF+TCQ Y+A DN C  IGKCKTC
Sbjct:  113 QVILNCATEVAGSCYGGTHTGTYEYASNNPVPFDTCQNYQAEDNTCDAIGKCKTC 167
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: D8LCL2_ECTSI (Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL2_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.830e-25
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCATE+AGSCHGG+HTG++EYASNNP+PF+TCQ Y+A DN C  IGKCKTC
Sbjct:   93 QVILNCATELAGSCHGGSHTGTYEYASNNPVPFDTCQQYQASDNTCDAIGKCKTC 147
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: A0A7S2V244_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V244_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 4.500e-16
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCA  +AGSCHGG  +G +E+A NN +PF+TCQ Y+A+D EC     C++C
Sbjct:  113 QVILNCAQNVAGSCHGGEPSGVYEWAHNNSVPFDTCQQYKAIDEECIPSNICRSC 167
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: A0A2K1KJT1_PHYPA (Cathepsin X n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KJT1_PHYPA)

HSP 1 Score: 77.0 bits (188), Expect = 2.520e-15
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCAT+IAGSCHGG   G F++   + LP ETCQLY A D+EC+ I  C+ C
Sbjct:  158 QVILNCATDIAGSCHGGDPLGVFKFMHEHGLPEETCQLYRARDDECTPINVCRNC 212
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: A0A835YGR9_9STRA (Cathepsin X n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGR9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.910e-15
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCAT  AGSCHGG   G FE+ + N +PF+TCQ Y+A D +C  +  C+TC
Sbjct:  111 QVILNCATATAGSCHGGFAKGVFEWGTENAIPFDTCQQYKARDEKCEPLNVCRTC 165
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: A9T5N1_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9T5N1_PHYPA)

HSP 1 Score: 77.0 bits (188), Expect = 3.930e-15
Identity = 32/55 (58.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCAT+IAGSCHGG   G F++   + LP ETCQLY A D+EC+ I  C+ C
Sbjct:  158 QVILNCATDIAGSCHGGDPLGVFKFMHEHGLPEETCQLYRARDDECTPINVCRNC 212
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: A0A2R6WDP6_MARPO (Cathepsin X n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WDP6_MARPO)

HSP 1 Score: 70.9 bits (172), Expect = 4.640e-13
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCA   AG+CHGG H  +F+Y   N +P ETCQLY+AVD EC+ +  C+ C
Sbjct:  156 QVVLNCAPN-AGTCHGGNHLETFKYIHENGIPEETCQLYKAVDEECTLLNICRDC 209
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: A0A482RI57_9ARCH (Pept_C1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RI57_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 2.380e-12
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNCAT+ AGSC GG   G +++ +   +P  TCQ Y+AVD +C+ I  C+TC
Sbjct:  137 QVILNCATQTAGSCDGGDDIGVYQFFNQVGIPDVTCQQYKAVDQDCTPINVCRTC 191
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BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Match: A0A830H4S3_9CHLO (Pept_C1 domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H4S3_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 2.430e-12
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIGKCKTC 165
            QV+LNC TE+AGSC+GG   G++++   N +P +TCQ Y+A D+EC+    C+ C
Sbjct:  139 QVILNCGTEVAGSCNGGWDAGAYQWVYENGVPSDTCQQYKARDDECTAENVCRNC 193
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21381.6534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FH69_ECTSI1.540e-2678.18Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5J6W1_9PHAE1.140e-2576.36Cathepsin X n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCL2_ECTSI2.830e-2576.36Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A7S2V244_9STRA4.500e-1654.55Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A2K1KJT1_PHYPA2.520e-1558.18Cathepsin X n=2 Tax=Physcomitrium patens TaxID=321... [more]
A0A835YGR9_9STRA3.910e-1554.55Cathepsin X n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A9T5N1_PHYPA3.930e-1558.18Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A2R6WDP6_MARPO4.640e-1354.55Cathepsin X n=2 Tax=Marchantia polymorpha TaxID=31... [more]
A0A482RI57_9ARCH2.380e-1249.09Pept_C1 domain-containing protein n=1 Tax=archaeon... [more]
A0A830H4S3_9CHLO2.430e-1247.27Pept_C1 domain-containing protein n=2 Tax=Pycnococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21381contigL-elsbetiae_contig21381:432..596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue4.6e-21
Seed eggNOG ortholog2880.D7FH69
KEGG koko:K08568
KEGG Pathwayko04142,ko04210,map04142,map04210
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG4870@1,KOG1543@2759
EC3.4.18.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815874.2329576-CDS-L-elsbetiae_contig21381:431..5961622815874.2329576-CDS-L-elsbetiae_contig21381:431..596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21381 432..596 -
1691683160.5970936-CDS-L-elsbetiae_contig21381:431..5961691683160.5970936-CDS-L-elsbetiae_contig21381:431..596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21381 432..596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21381.6534.1prot_L-elsbetiae_contig21381.6534.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21381 432..596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21381.6534.1

>prot_L-elsbetiae_contig21381.6534.1 ID=prot_L-elsbetiae_contig21381.6534.1|Name=mRNA_L-elsbetiae_contig21381.6534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
QVLLNCATEIAGSCHGGTHTGSFEYASNNPLPFETCQLYEAVDNECSDIG
KCKTC
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mRNA from alignment at L-elsbetiae_contig21381:432..596-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21381.6534.1 ID=mRNA_L-elsbetiae_contig21381.6534.1|Name=mRNA_L-elsbetiae_contig21381.6534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig21381:432..596- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTCTCCTCAACTGCGCCACCGAGATCGCCGGCTCCTGCCACGGCGG
AACCCACACGGGGTCCTTCGAGTACGCGTCGAACAACCCGCTGCCGTTCG
AGACGTGCCAGCTCTACGAGGCGGTGGACAACGAGTGCTCCGACATCGGG
AAGTGCAAGACCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21381:432..596-

>mRNA_L-elsbetiae_contig21381.6534.1 ID=mRNA_L-elsbetiae_contig21381.6534.1|Name=mRNA_L-elsbetiae_contig21381.6534.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig21381:432..596- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTTCTCCTCAACTGCGCCACCGAGATCGCCGGCTCCTGCCACGGCGG
AACCCACACGGGGTCCTTCGAGTACGCGTCGAACAACCCGCTGCCGTTCG
AGACGTGCCAGCTCTACGAGGCGGTGGACAACGAGTGCTCCGACATCGGG
AAGTGCAAGACCTGCCAGGTTCTCCTCAACTGCGCCACCGAGATCGCCGG
CTCCTGCCACGGCGGAACCCACACGGGGTCCTTCGAGTACGCGTCGAACA
ACCCGCTGCCGTTCGAGACGTGCCAGCTCTACGAGGCGGTGGACAACGAG
TGCTCCGACATCGGGAAGTGCAAGACCTGC
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