mRNA_L-elsbetiae_contig21327.6522.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21327.6522.1
Unique NamemRNA_L-elsbetiae_contig21327.6522.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21327.6522.1 vs. uniprot
Match: D7FPX0_ECTSI (RNA polymerase sigma factor n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPX0_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 7.380e-50
Identity = 101/143 (70.63%), Postives = 116/143 (81.12%), Query Frame = 2 
Query:   80 EFAVEAPTDDKQARQQARTRRRRLNLLSAVQKVTSIDRLIRTSEGGA-IPLIDTLAGGDQPPGGXGAGGKTDISELLPRVLTPLQADVVRMAWGLVDGRPMSMVECSKELSLSATRTKNLFDSSLEKLRIAAAADNPGRLVRQ 505
            EFAV+A + D++ARQQARTRRRRLNLLSAVQKVTSIDRLIR S+G   +PL+DTL G  +      AGG  DI+ELLPRVLTP QA +VRMA GL DG+PM+M ECSKELSLS  RTK+LFDSSL+KLR AA AD+ GRLVRQ
Sbjct:  375 EFAVKAASSDREARQQARTRRRRLNLLSAVQKVTSIDRLIRASDGSTMVPLVDTLVGDLEDGQPRSAGG--DIAELLPRVLTPRQASLVRMACGLSDGKPMTMAECSKELSLSVARTKSLFDSSLQKLRAAAEADDLGRLVRQ 515
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21327.6522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPX0_ECTSI7.380e-5070.63RNA polymerase sigma factor n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21327contigL-elsbetiae_contig21327:41..707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size669
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.2814007-CDS-L-elsbetiae_contig21327:40..4541622815873.2814007-CDS-L-elsbetiae_contig21327:40..454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21327 41..454 +
1691683159.93544-CDS-L-elsbetiae_contig21327:40..4541691683159.93544-CDS-L-elsbetiae_contig21327:40..454Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21327 41..454 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815873.2922437-UTR-L-elsbetiae_contig21327:454..7071622815873.2922437-UTR-L-elsbetiae_contig21327:454..707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21327 455..707 +
1691683159.9466236-UTR-L-elsbetiae_contig21327:454..7071691683159.9466236-UTR-L-elsbetiae_contig21327:454..707Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21327 455..707 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21327.6522.1prot_L-elsbetiae_contig21327.6522.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21327 41..454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21327.6522.1

>prot_L-elsbetiae_contig21327.6522.1 ID=prot_L-elsbetiae_contig21327.6522.1|Name=mRNA_L-elsbetiae_contig21327.6522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=138bp
AVCSARGGGGWRRGAIEARQGAAGGAGVCGRGADGRQTGAAAGQDAKAAA
QPAVGGAEGDEHRPAYPDERRRCHPPHRHPRRGRPAAGRRRRRREDRHLG
AAAEGAHAAPGRRGADGVGAGGWAADVDGGVLEGALT*
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mRNA from alignment at L-elsbetiae_contig21327:41..707+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21327.6522.1 ID=mRNA_L-elsbetiae_contig21327.6522.1|Name=mRNA_L-elsbetiae_contig21327.6522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=667bp|location=Sequence derived from alignment at L-elsbetiae_contig21327:41..707+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCTGCAGCGCTCGCGGGGGAGGCGGGTGGCGGAGGGGGGCAATCGA
GGCGCGGCAGGGCGCAGCTGGCGGGGCGGGAGTTTGCGGTCGAGGCGCCG
ACGGACGACAAACAGGCGCGGCAGCAGGCCAGGACGCGAAGGCGGCGGCT
CAACCTGCTGTCGGCGGTGCAGAAGGTGACGAGCATCGACCGGCTTATCC
GGACGAGCGAAGGCGGTGCCATCCCCCTCATAGACACCCTCGCCGGGGGA
GACCAGCCGCCGGGCGGCGGCGGCGCCGGCGGGAAGACCGACATCTCGGA
GCTGCTGCCGAGGGTGCTCACGCCGCTCCAGGCCGACGTGGTGCGGATGG
CGTGGGGGCTGGTGGATGGGCGGCCGATGTCGATGGTGGAGTGCTCGAAG
GAGCTCTCACTTAGCGCGACCAGAACGAAGAACCTGTTCGACAGCAGCCT
GGAGAAGTTGAGAATAGCGGCCGCGGCCGATAACCCCGGCAGGCTCGTAC
GACAGACCTGAGCCGACCTGAACTGACGCCGACCAGCTGTTGGCTGTCGT
TTTGGTCTTATTGTGTACATGAAAAGTTAAGTTCCAGCGCGTTTTGGAGG
CTGCACTGCACGGCTCAAACGCCGTCGGTGACGACGTTGGCGGCTGCAGG
CATTTTGGGGGGCGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21327:41..707+

>mRNA_L-elsbetiae_contig21327.6522.1 ID=mRNA_L-elsbetiae_contig21327.6522.1|Name=mRNA_L-elsbetiae_contig21327.6522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=828bp|location=Sequence derived from alignment at L-elsbetiae_contig21327:41..707+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGTCTGCAGCGCTCGCGGGGGAGGCGGGTGGCGGAGGGGGGCAATCGA
GGCGCGGCAGGGCGCAGCTGGCGGGGCGGGAGTTTGCGGTCGAGGCGCCG
ACGGACGACAAACAGGCGCGGCAGCAGGCCAGGACGCGAAGGCGGCGGCT
CAACCTGCTGTCGGCGGTGCAGAAGGTGACGAGCATCGACCGGCTTATCC
GGACGAGCGAAGGCGGTGCCATCCCCCTCATAGACACCCTCGCCGGGGGA
GACCAGCCGCCGGGCGGCGGCGGCGCCGGCGGGAAGACCGACATCTCGGA
GCTGCTGCCGAGGGTGCTCACGCCGCTCCAGGCCGACGTGGTGCGGATGG
CGTGGGGGCTGGTGGATGGGCGGCCGATGTCGATGGTGGAGTGCTCGAAG
GAGCTCTCACTTAGGCCGTCTGCAGCGCTCGCGGGGGAGGCGGGTGGCGG
AGGGGGGCAATCGAGGCGCGGCAGGGCGCAGCTGGCGGGGCGGGAGTTTG
CGGTCGAGGCGCCGACGGACGACAAACAGGCGCGGCAGCAGGCCAGGACG
CGAAGGCGGCGGCTCAACCTGCTGTCGGCGGTGCAGAAGGTGACGAGCAT
CGACCGGCTTATCCGGACGAGCGAAGGCGGTGCCATCCCCCTCATAGACA
CCCTCGCCGGGGGAGACCAGCCGCCGGGCGGCGGCGGCGCCGGCGGGAAG
ACCGACATCTCGGAGCTGCTGCCGAGGGTGCTCACGCCGCTCCAGGCCGA
CGTGGTGCGGATGGCGTGGGGGCTGGTGGATGGGCGGCCGATGTCGATGG
TGGAGTGCTCGAAGGAGCTCTCACTTAG
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