mRNA_L-elsbetiae_contig213.6513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig213.6513.1
Unique NamemRNA_L-elsbetiae_contig213.6513.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig213.6513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig213contigL-elsbetiae_contig213:48499..49150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAlpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase, family GT54
Ec32 orthologEc-07_006930.1
Exons1
Model size652
Cds size489
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.282449-UTR-L-elsbetiae_contig213:48498..486611622815872.282449-UTR-L-elsbetiae_contig213:48498..48661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 48499..48661 +
1691683159.2500048-UTR-L-elsbetiae_contig213:48498..486611691683159.2500048-UTR-L-elsbetiae_contig213:48498..48661Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig213 48499..48661 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815872.2930534-CDS-L-elsbetiae_contig213:48661..491501622815872.2930534-CDS-L-elsbetiae_contig213:48661..49150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 48662..49150 +
1691683159.2655182-CDS-L-elsbetiae_contig213:48661..491501691683159.2655182-CDS-L-elsbetiae_contig213:48661..49150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig213 48662..49150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig213.6513.1prot_L-elsbetiae_contig213.6513.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig213 48662..49150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig213.6513.1

>prot_L-elsbetiae_contig213.6513.1 ID=prot_L-elsbetiae_contig213.6513.1|Name=mRNA_L-elsbetiae_contig213.6513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MSSGTATEDGNAPWDVLSLGMARRAHPRQGLGRGSGASDELLGLPAASFG
NRSSVGSRRNHAARGLTSESVGLPGSSMPAKCWMLLSVSAIAAIVVLRHL
TSPGAYMPGSANVQGEERGIHRHRHHHDPSFSAGDKDKLSAMSEAVTIGE
HHNKVGTTTGSG*
back to top

mRNA from alignment at L-elsbetiae_contig213:48499..49150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig213.6513.1 ID=mRNA_L-elsbetiae_contig213.6513.1|Name=mRNA_L-elsbetiae_contig213.6513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=652bp|location=Sequence derived from alignment at L-elsbetiae_contig213:48499..49150+ (Laminarionema elsbetiae ELsaHSoW15)
TTTTTGTTTCGGTTTCCTTGTATAGTGTGGTTCGCCGAGCACGAGAGCTA
GAGCTTGGCGATCTTGCCGGTGCGAGTGCGAGCTACCGAAAGAAGCGAAG
CGCATCTGGATCTCCGGTAAGGCATGCCCGAGGAGGGGGTGGAGGAGCAC
CGAGTCATCTAGAATGTCGTCGGGAACAGCAACCGAAGATGGAAATGCTC
CGTGGGATGTGCTGTCCCTTGGGATGGCGAGACGCGCGCACCCCCGCCAA
GGCCTAGGAAGAGGTAGCGGCGCCTCAGACGAGCTTCTTGGTCTTCCTGC
TGCGAGCTTCGGCAATCGTAGCAGCGTCGGCAGTCGAAGGAACCACGCCG
CCAGAGGGCTCACAAGCGAAAGTGTTGGGTTACCCGGGTCATCCATGCCG
GCAAAGTGTTGGATGCTTCTCTCTGTGTCCGCCATCGCGGCCATCGTGGT
CTTGCGGCATCTTACTTCCCCGGGAGCTTACATGCCAGGGTCGGCAAACG
TACAGGGGGAGGAGCGAGGCATTCATCGGCACCGGCATCATCACGACCCA
AGTTTCTCCGCAGGCGACAAGGATAAACTGTCCGCGATGTCAGAGGCTGT
TACCATCGGGGAGCATCACAACAAGGTAGGCACGACGACGGGGTCGGGTT
GA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig213:48499..49150+

>mRNA_L-elsbetiae_contig213.6513.1 ID=mRNA_L-elsbetiae_contig213.6513.1|Name=mRNA_L-elsbetiae_contig213.6513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig213:48499..49150+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGTCGGGAACAGCAACCGAAGATGGAAATGCTCCGTGGGATGTGCT
GTCCCTTGGGATGGCGAGACGCGCGCACCCCCGCCAAGGCCTAGGAAGAG
GTAGCGGCGCCTCAGACGAGCTTCTTGGTCTTCCTGCTGCGAGCTTCGGC
AATCGTAGCAGCGTCGGCAGTCGAAGGAACCACGCCGCCAGAGGGCTCAC
AAGCGAAAGTGTTGGGTTACCCGGGTCATCCATGCCGGCAAAGTGTTGGA
TGCTTCTCTCTGTGTCCGCCATCGCGGCCATCGTGGTCTTGCGGCATCTT
ACTTCCCCGGGAGCTTACATGCCAGGGTCGGCAAACGTACAGGGGGAGGA
GCGAGGCATTCATCGGCACCGGCATCATCACGACCCAAGTTTCTCCGCAG
GCGACAAGGATAAACTGTCCGCGATGTCAGAGGCTGTTACCATCGGGGAG
CATCACAACAAGGTAGGCACGACGACGGGGTCGGGTTGAATGTCGTCGGG
AACAGCAACCGAAGATGGAAATGCTCCGTGGGATGTGCTGTCCCTTGGGA
TGGCGAGACGCGCGCACCCCCGCCAAGGCCTAGGAAGAGGTAGCGGCGCC
TCAGACGAGCTTCTTGGTCTTCCTGCTGCGAGCTTCGGCAATCGTAGCAG
CGTCGGCAGTCGAAGGAACCACGCCGCCAGAGGGCTCACAAGCGAAAGTG
TTGGGTTACCCGGGTCATCCATGCCGGCAAAGTGTTGGATGCTTCTCTCT
GTGTCCGCCATCGCGGCCATCGTGGTCTTGCGGCATCTTACTTCCCCGGG
AGCTTACATGCCAGGGTCGGCAAACGTACAGGGGGAGGAGCGAGGCATTC
ATCGGCACCGGCATCATCACGACCCAAGTTTCTCCGCAGGCGACAAGGAT
AAACTGTCCGCGATGTCAGAGGCTGTTACCATCGGGGAGCATCACAACAA
GGTAGGCACGACGACGGGGTCGGGTTGA
back to top