mRNA_L-elsbetiae_contig2108.6391.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2108.6391.1
Unique NamemRNA_L-elsbetiae_contig2108.6391.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2108.6391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2108contigL-elsbetiae_contig2108:4099..5440 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPeptidase S54, rhomboid domain
Ec32 orthologEc-04_006090.1
Exons2
Model size714
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2108.6391.1prot_L-elsbetiae_contig2108.6391.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2108 4378..5440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.1839716-UTR-L-elsbetiae_contig2108:4098..43771622815864.1839716-UTR-L-elsbetiae_contig2108:4098..4377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2108 4099..4377 +
1691683154.2941647-UTR-L-elsbetiae_contig2108:4098..43771691683154.2941647-UTR-L-elsbetiae_contig2108:4098..4377Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2108 4099..4377 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.196599-CDS-L-elsbetiae_contig2108:4377..44291622815864.196599-CDS-L-elsbetiae_contig2108:4377..4429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2108 4378..4429 +
1691683154.3032067-CDS-L-elsbetiae_contig2108:4377..44291691683154.3032067-CDS-L-elsbetiae_contig2108:4377..4429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2108 4378..4429 +
1622815864.2101629-CDS-L-elsbetiae_contig2108:5057..54401622815864.2101629-CDS-L-elsbetiae_contig2108:5057..5440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2108 5058..5440 +
1691683154.3117878-CDS-L-elsbetiae_contig2108:5057..54401691683154.3117878-CDS-L-elsbetiae_contig2108:5057..5440Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2108 5058..5440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2108.6391.1

>prot_L-elsbetiae_contig2108.6391.1 ID=prot_L-elsbetiae_contig2108.6391.1|Name=mRNA_L-elsbetiae_contig2108.6391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=145bp
MVCHLGALMMLAGSTGSGTTTAFTVAPSFHNLQQHSTPPPNIQVSARGLA
TVVVPHHRRNSVTRFDSRRDRATLMLSDDHGANDEARTRGLATCLFGRGG
GAKSSGTAHRASRSGGGGDDNLAGFDSDGGSSRPPRSGGLGRWA*
back to top

mRNA from alignment at L-elsbetiae_contig2108:4099..5440+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2108.6391.1 ID=mRNA_L-elsbetiae_contig2108.6391.1|Name=mRNA_L-elsbetiae_contig2108.6391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1342bp|location=Sequence derived from alignment at L-elsbetiae_contig2108:4099..5440+ (Laminarionema elsbetiae ELsaHSoW15)
TCGGAGTCTCTCTCTCCCCTTCTACCGACAGAACGTCCACGCTGTACGTC
TGCACTGCGGGGTGGCGGCGTCTAAGCGTCTAAGAGTCTGAGAAGGGGTT
GTTTGTGGTTCTTCGTCGGACAGGAGTTCAACACGGTGCTCGTGTTATGC
GTTTTTCTCGCAGAGGATTTCCGCGGACTGCAACTCCATCCTTACCATCT
CACACATCAAACGCCGGCACCAGAGAGAGAGATCGGCCAGGCACAAACGA
CAACGAGTCTTTCACATCGTTACTCAGCAATGGTGTGTCATTTGGGCGCC
TTAATGATGCTTGCGGGATCCACGGGGTCTGGTGAGTTTGCGAATCTGTA
GTTCGGCCGCTGACGGAGTATAACACCCTCCGTGTGAATGTGTAGATCCT
CCCAAGTCCTATTGCAACAACCGGGGGTGGTTGTCGTACAGACAGTCGAA
GAGCTTCCCGTTTAAGCAGTGTCGCCGGTGCTTTTGTCGAGTAGCCGAGC
TTTTAAAATCGATCCAAGTACATATCTCGATGACACAAATGAAGGCACAC
TGCTACTGCTTTACCCTGCTGTACCTACCTACCGCCATGTGGACAATGTT
GCAGGCTGCCTACAATACTTGGCAGCAGTATAGGCTACCCCACCCCCGCT
GCGACAAGGGCTTGAAGGCTGATTATCGAGTCCGTAGATAGGTCCAAGCG
AAACTAGACTGCAGTTGCTGGACTATTGCGCACACGCACGCTACGATACA
CTCGGACCCACTTTGCGATCGCCGCCTGCGTGTTCCCTGGCCCATGAGAC
TAGATATCTGTATCGTTCGCTTGTGAGATATCTACTTATATTGTATGTTG
GGATCAAAGGTGTGTGGGGGGATTTCAAACAACGTGAATTACGATGTACT
TGTTATGTATCCTCCCCACCATTTTCGCCGCCTTCCGTTCCTCTCGTCCC
CCGTTCCAGGAACGACGACAGCATTCACCGTCGCGCCCTCCTTCCACAAT
CTCCAACAACATTCCACCCCACCACCGAACATCCAAGTATCGGCACGGGG
ATTGGCGACAGTAGTCGTCCCTCACCACCGCCGCAACTCCGTCACCCGCT
TCGACAGCCGTAGAGACAGGGCAACACTGATGCTTTCGGACGACCATGGC
GCGAATGATGAGGCACGTACTCGCGGCTTGGCCACGTGCCTTTTCGGTCG
CGGTGGCGGCGCCAAGAGTAGCGGCACCGCTCATAGAGCTAGCAGAAGCG
GCGGCGGTGGTGACGATAACCTCGCAGGCTTTGACAGCGACGGCGGGTCA
TCAAGACCTCCGAGAAGCGGTGGGCTTGGGAGGTGGGCTTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig2108:4099..5440+

>mRNA_L-elsbetiae_contig2108.6391.1 ID=mRNA_L-elsbetiae_contig2108.6391.1|Name=mRNA_L-elsbetiae_contig2108.6391.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=870bp|location=Sequence derived from alignment at L-elsbetiae_contig2108:4099..5440+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGTGTCATTTGGGCGCCTTAATGATGCTTGCGGGATCCACGGGGTC
TGATGGTGTGTCATTTGGGCGCCTTAATGATGCTTGCGGGATCCACGGGG
TCTGGAACGACGACAGCATTCACCGTCGCGCCCTCCTTCCACAATCTCCA
ACAACATTCCACCCCACCACCGAACATCCAAGTATCGGCACGGGGATTGG
CGACAGTAGTCGTCCCTCACCACCGCCGCAACTCCGTCACCCGCTTCGAC
AGCCGTAGAGACAGGGCAACACTGATGCTTTCGGACGACCATGGCGCGAA
TGATGAGGCACGTACTCGCGGCTTGGCCACGTGCCTTTTCGGTCGCGGTG
GCGGCGCCAAGAGTAGCGGCACCGCTCATAGAGCTAGCAGAAGCGGCGGC
GGTGGTGACGATAACCTCGCAGGCTTTGACAGCGACGGCGGGTCATCAAG
ACCTCCGAGAAGCGGTGGGCTTGGGAGGTGGGCTTGAGAACGACGACAGC
ATTCACCGTCGCGCCCTCCTTCCACAATCTCCAACAACATTCCACCCCAC
CACCGAACATCCAAGTATCGGCACGGGGATTGGCGACAGTAGTCGTCCCT
CACCACCGCCGCAACTCCGTCACCCGCTTCGACAGCCGTAGAGACAGGGC
AACACTGATGCTTTCGGACGACCATGGCGCGAATGATGAGGCACGTACTC
GCGGCTTGGCCACGTGCCTTTTCGGTCGCGGTGGCGGCGCCAAGAGTAGC
GGCACCGCTCATAGAGCTAGCAGAAGCGGCGGCGGTGGTGACGATAACCT
CGCAGGCTTTGACAGCGACGGCGGGTCATCAAGACCTCCGAGAAGCGGTG
GGCTTGGGAGGTGGGCTTGA
back to top