mRNA_L-elsbetiae_contig2107.6386.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig2107.6386.1
Unique NamemRNA_L-elsbetiae_contig2107.6386.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig2107.6386.1 vs. uniprot
Match: A0A6H5L5J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.810e-10
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 3 
Query:   75 GGDPHFCLPGPPDEMALLLLKLVWAVHQER 164
            G DPHFCLPGPPDE+ LLLLK++WA+HQER
Sbjct:  185 GNDPHFCLPGPPDELGLLLLKIIWAIHQER 214
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BLAST of mRNA_L-elsbetiae_contig2107.6386.1 vs. uniprot
Match: D7G974_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G974_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.870e-8
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:   63 EKYVGGDPHFCLPGPPDEMALLLLKLVWAVHQER 164
            E+ V  DPHFC+PGPPDE+ +LLLKL+WA+H E+
Sbjct:  152 ERTVEDDPHFCMPGPPDEVGILLLKLLWALHHEK 185
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BLAST of mRNA_L-elsbetiae_contig2107.6386.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.070e-8
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:   63 EKYVGGDPHFCLPGPPDEMALLLLKLVWAVHQER 164
            E+ V  DPHFC+PGPPDE+ +LLLKL+WA+H E+
Sbjct:  418 ERTVENDPHFCMPGPPDEVGILLLKLLWALHHEK 451
[Close]
BLAST of mRNA_L-elsbetiae_contig2107.6386.1 vs. uniprot
Match: A0A6H5LBA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBA5_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 7.180e-8
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   81 DPHFCLPGPPDEMALLLLKLVWAVHQER 164
            DPHFCLPGPPDE+  LLLK++WA++QER
Sbjct:  187 DPHFCLPGPPDELGFLLLKIIWALYQER 214
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2107.6386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L5J2_9PHAE1.810e-1080.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G974_ECTSI1.870e-864.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAG2_9PHAE4.070e-864.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LBA5_9PHAE7.180e-875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig2107contigL-elsbetiae_contig2107:11473..11751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size279
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig2107.6386.1prot_L-elsbetiae_contig2107.6386.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig2107 11484..11642 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.0590234-UTR-L-elsbetiae_contig2107:11472..114831622815864.0590234-UTR-L-elsbetiae_contig2107:11472..11483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2107 11473..11483 +
1691683154.2287009-UTR-L-elsbetiae_contig2107:11472..114831691683154.2287009-UTR-L-elsbetiae_contig2107:11472..11483Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2107 11473..11483 +
1622815864.0875425-UTR-L-elsbetiae_contig2107:11642..117511622815864.0875425-UTR-L-elsbetiae_contig2107:11642..11751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2107 11643..11751 +
1691683154.2493954-UTR-L-elsbetiae_contig2107:11642..117511691683154.2493954-UTR-L-elsbetiae_contig2107:11642..11751Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig2107 11643..11751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815864.0745597-CDS-L-elsbetiae_contig2107:11483..116421622815864.0745597-CDS-L-elsbetiae_contig2107:11483..11642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2107 11484..11642 +
1691683154.239106-CDS-L-elsbetiae_contig2107:11483..116421691683154.239106-CDS-L-elsbetiae_contig2107:11483..11642Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig2107 11484..11642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig2107.6386.1

>prot_L-elsbetiae_contig2107.6386.1 ID=prot_L-elsbetiae_contig2107.6386.1|Name=mRNA_L-elsbetiae_contig2107.6386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=53bp
MESVGQDHENKVEDDRFEKYVGGDPHFCLPGPPDEMALLLLKLVWAVHQE
RV*
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mRNA from alignment at L-elsbetiae_contig2107:11473..11751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig2107.6386.1 ID=mRNA_L-elsbetiae_contig2107.6386.1|Name=mRNA_L-elsbetiae_contig2107.6386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=279bp|location=Sequence derived from alignment at L-elsbetiae_contig2107:11473..11751+ (Laminarionema elsbetiae ELsaHSoW15)
CGAAAGGCGCTATGGAATCTGTAGGGCAAGATCATGAAAACAAGGTCGAA
GATGATAGGTTCGAGAAGTATGTAGGCGGCGACCCCCATTTTTGCCTGCC
GGGACCTCCGGACGAGATGGCTTTGTTACTGTTGAAGCTTGTGTGGGCTG
TGCATCAAGAAAGAGTCTAGGGGTTGGTGCTATTGTTACGTCACAGAGCA
GGTCGGGTTCCTTCGAAATTCAGGAAAGTTGTTTGCGACTTTACCAAACG
GTCTCGCTACGCCCGAAGGGGAGAGAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig2107:11473..11751+

>mRNA_L-elsbetiae_contig2107.6386.1 ID=mRNA_L-elsbetiae_contig2107.6386.1|Name=mRNA_L-elsbetiae_contig2107.6386.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig2107:11473..11751+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAATCTGTAGGGCAAGATCATGAAAACAAGGTCGAAGATGATAGGTT
CGAGAAGTATGTAGGCGGCGACCCCCATTTTTGCCTGCCGGGACCTCCGG
ACGAGATGGCTTTGTTACTGTTGAAGCTTGTGTGGGCTGTGCATCAAGAA
AGAGTCTAGATGGAATCTGTAGGGCAAGATCATGAAAACAAGGTCGAAGA
TGATAGGTTCGAGAAGTATGTAGGCGGCGACCCCCATTTTTGCCTGCCGG
GACCTCCGGACGAGATGGCTTTGTTACTGTTGAAGCTTGTGTGGGCTGTG
CATCAAGAAAGAGTCTAG
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