mRNA_L-elsbetiae_contig21068.6385.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21068.6385.1
Unique NamemRNA_L-elsbetiae_contig21068.6385.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21068.6385.1 vs. uniprot
Match: D7FK36_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK36_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 8.790e-25
Identity = 73/121 (60.33%), Postives = 85/121 (70.25%), Query Frame = 2 
Query:  107 MGGADVAT-SSGLLGAYNKGRLIAAN---GAAGLFMGTGAVAGQNTKEHEDTSSGGGRGGRSSITTGSADLHSAVEQGDVDAVSELLNTGVDAAALDADGRSPLLHATQGGHLGVITVLLE 457
            MG A +A+ SS LL AYNKGR IA +   GAA LF+G GAVAGQNTKEH  +SS    G  S      ADLHSAV +G+ DAVS+LL+ G DAA+LD  GRSPLL ATQ GHL V+ VLL+
Sbjct:    1 MGKAGIASPSSDLLDAYNKGRSIATSHFAGAAELFLGAGAVAGQNTKEHPGSSSSCSSGAVSRACP--ADLHSAVRRGEADAVSKLLSEGADAASLDGSGRSPLLLATQEGHLPVVRVLLD 119
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21068.6385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK36_ECTSI8.790e-2560.33Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21068contigL-elsbetiae_contig21068:13..924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue3.1e-22
Seed eggNOG ortholog2880.D7FK36
Hectar predicted targeting categoryother localisation
EggNOG free text desc.calmodulin-dependent protein kinase activity
EggNOG OGsKOG0033@1,KOG0033@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size466
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21068.6385.1prot_L-elsbetiae_contig21068.6385.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21068 13..372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.930122-CDS-L-elsbetiae_contig21068:12..3721622815863.930122-CDS-L-elsbetiae_contig21068:12..372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21068 13..372 -
1691683154.1731627-CDS-L-elsbetiae_contig21068:12..3721691683154.1731627-CDS-L-elsbetiae_contig21068:12..372Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21068 13..372 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815863.940691-UTR-L-elsbetiae_contig21068:372..4081622815863.940691-UTR-L-elsbetiae_contig21068:372..408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21068 373..408 -
1691683154.1858325-UTR-L-elsbetiae_contig21068:372..4081691683154.1858325-UTR-L-elsbetiae_contig21068:372..408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21068 373..408 -
1622815863.950147-UTR-L-elsbetiae_contig21068:854..9241622815863.950147-UTR-L-elsbetiae_contig21068:854..924Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21068 855..924 -
1691683154.195682-UTR-L-elsbetiae_contig21068:854..9241691683154.195682-UTR-L-elsbetiae_contig21068:854..924Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21068 855..924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21068.6385.1

>prot_L-elsbetiae_contig21068.6385.1 ID=prot_L-elsbetiae_contig21068.6385.1|Name=mRNA_L-elsbetiae_contig21068.6385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MGGADVATSSGLLGAYNKGRLIAANGAAGLFMGTGAVAGQNTKEHEDTSS
GGGRGGRSSITTGSADLHSAVEQGDVDAVSELLNTGVDAAALDADGRSPL
LHATQGGHLGVITVLLEFGA
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mRNA from alignment at L-elsbetiae_contig21068:13..924-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21068.6385.1 ID=mRNA_L-elsbetiae_contig21068.6385.1|Name=mRNA_L-elsbetiae_contig21068.6385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig21068:13..924- (Laminarionema elsbetiae ELsaHSoW15)
AAACAGAGCACTTTTCTTTCAAGGCATCCCCAGCTTGGTGCGAAGCGCGA
AGTTCTGAGGCCTCTACCCTGTGAGTATGTATGTCTATGTTGGGGGGACC
TTGGAATAGAATAACAATTGGCATGGGAAGAGAAGAGAGGGTGAAATCGC
CGGGGGGCTCTTCAACAAGGGGTTCCATTTCCACATGTTGCCGAAGCTCG
CTGGAGCGTGTGCGACGGCGATGAACGGGGTGTGCCTAGGGCGAGGGTAG
AGTTTCTTCATATCGCTTCTATATACAGCAGTATTGGGGGGCGTACCCCA
CACACGGCGGACCACACGGCATGACGAGCGGGCATCGCGCACCTTTTCCT
GGGGGAACACTCTCTTTTTCGTTTGGGAACCCATCGAGTAATCACACCCC
ATGGTTGCTCGCCGTATTGCTGTTGTTCTCACATCACCCAACGATGCTAT
GCTTGTGTGCTTTCTCAACCCCCCGCCTACGTATATATGTGCGCGCCGAC
ACACTTGTGGCGGCAGCACGCGTTTTGGGAGCAAGCTGTGGGAGGTAGCG
ACATGGGGGGAGCGGACGTCGCAACATCATCTGGCTTGCTGGGTGCATAC
AACAAGGGCCGGTTGATCGCTGCCAATGGAGCGGCGGGGCTGTTTATGGG
TACTGGCGCTGTCGCTGGTCAGAACACCAAGGAGCATGAAGATACCAGCA
GCGGCGGCGGCCGCGGCGGTAGGAGCAGCATCACAACGGGCTCCGCTGAT
CTCCACAGTGCTGTCGAACAGGGCGACGTCGACGCAGTTTCAGAGCTATT
GAACACCGGCGTGGACGCAGCAGCGCTAGATGCTGACGGGAGGTCCCCAC
TACTCCACGCAACCCAAGGTGGGCACTTGGGGGTGATTACTGTGTTGCTC
GAGTTTGGTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21068:13..924-

>mRNA_L-elsbetiae_contig21068.6385.1 ID=mRNA_L-elsbetiae_contig21068.6385.1|Name=mRNA_L-elsbetiae_contig21068.6385.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig21068:13..924- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGGGAGCGGACGTCGCAACATCATCTGGCTTGCTGGGTGCATACAA
CAAGGGCCGGTTGATCGCTGCCAATGGAGCGGCGGGGCTGTTTATGGGTA
CTGGCGCTGTCGCTGGTCAGAACACCAAGGAGCATGAAGATACCAGCAGC
GGCGGCGGCCGCGGCGGTAGGAGCAGCATCACAACGGGCTCCGCTGATCT
CCACAGTGCTGTCGAACAGGGCGACGTCGACGCAGTTTCAGAGCTATTGA
ACACCGGCGTGGACGCAGCAGCGCTAGATGCTGACGGGAGGTCCCCACTA
CTCCACGCAACCCAAGGTGGGCACTTGGGGGTGATTACTGTGTTGCTCGA
GTTTGGTGCCATGGGGGGAGCGGACGTCGCAACATCATCTGGCTTGCTGG
GTGCATACAACAAGGGCCGGTTGATCGCTGCCAATGGAGCGGCGGGGCTG
TTTATGGGTACTGGCGCTGTCGCTGGTCAGAACACCAAGGAGCATGAAGA
TACCAGCAGCGGCGGCGGCCGCGGCGGTAGGAGCAGCATCACAACGGGCT
CCGCTGATCTCCACAGTGCTGTCGAACAGGGCGACGTCGACGCAGTTTCA
GAGCTATTGAACACCGGCGTGGACGCAGCAGCGCTAGATGCTGACGGGAG
GTCCCCACTACTCCACGCAACCCAAGGTGGGCACTTGGGGGTGATTACTG
TGTTGCTCGAGTTTGGTGCC
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