mRNA_L-elsbetiae_contig21.6356.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21.6356.1
Unique NamemRNA_L-elsbetiae_contig21.6356.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig21.6356.1 vs. uniprot
Match: D7FUJ6_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ6_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 1.320e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   85 CGHRGCNKIPSYGMEGTKKAELCSQHAKQGMV 180
            CGH GC K PSYG +G+KKAELC+QHA QGMV
Sbjct:    9 CGHPGCTKRPSYGNDGSKKAELCAQHALQGMV 40
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BLAST of mRNA_L-elsbetiae_contig21.6356.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 6.790e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   79 SECGHRGCNKIPSYGMEGTKKAELCSQHAKQGMVSVINRR 198
            S+CGH  C K P+YG+ G+KK E CSQHA+ GMV+V N+R
Sbjct:    2 SQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_L-elsbetiae_contig21.6356.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 7.420e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   79 SECGHRGCNKIPSYGMEGTKKAELCSQHAKQGMVSVINRR 198
            S+CGH  C K P+YG+ G+KK E CSQHA+ GMV+V N+R
Sbjct:   62 SQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21.6356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FUJ6_ECTSI1.320e-675.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FI73_ECTSI6.790e-660.00EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE7.420e-660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21contigL-elsbetiae_contig21:77499..80705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue2.6e-06
Seed eggNOG ortholog2880.D7FHY3
Hectar predicted targeting categoryother localisation
EggNOG OGs29ZCP@1,2RXW0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2258
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21.6356.1prot_L-elsbetiae_contig21.6356.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21 79212..80354 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815860.6629455-UTR-L-elsbetiae_contig21:77498..782371622815860.6629455-UTR-L-elsbetiae_contig21:77498..78237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 77499..78237 -
1691683152.0335824-UTR-L-elsbetiae_contig21:77498..782371691683152.0335824-UTR-L-elsbetiae_contig21:77498..78237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 77499..78237 -
1622815860.67434-UTR-L-elsbetiae_contig21:79186..792111622815860.67434-UTR-L-elsbetiae_contig21:79186..79211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 79187..79211 -
1691683152.0587487-UTR-L-elsbetiae_contig21:79186..792111691683152.0587487-UTR-L-elsbetiae_contig21:79186..79211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 79187..79211 -
1622815860.698352-UTR-L-elsbetiae_contig21:80354..807051622815860.698352-UTR-L-elsbetiae_contig21:80354..80705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 80355..80705 -
1691683152.0837736-UTR-L-elsbetiae_contig21:80354..807051691683152.0837736-UTR-L-elsbetiae_contig21:80354..80705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 80355..80705 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815860.6884866-CDS-L-elsbetiae_contig21:79211..803541622815860.6884866-CDS-L-elsbetiae_contig21:79211..80354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21 79212..80354 -
1691683152.0704093-CDS-L-elsbetiae_contig21:79211..803541691683152.0704093-CDS-L-elsbetiae_contig21:79211..80354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21 79212..80354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21.6356.1

>prot_L-elsbetiae_contig21.6356.1 ID=prot_L-elsbetiae_contig21.6356.1|Name=mRNA_L-elsbetiae_contig21.6356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=381bp
MEGTKKAELCSQHAREGMVDVTNRRCGHQGCNKQPSYGMGGTKKAELCSQ
HAREGIVDVVKRRCGHRGCNKKPSYGMEGTKKAELCSQHARDGMVDVVNK
KCDHRGCNKKPSYGMEGTKKAELCSQHARDGMVDVVNKKCGHPGCNTRPS
YGMEGTKKAELCAQHAREGMVNVVSKRCGHQGCNRHPSYGMEGTKKAELC
SQHARGGMVVVVSKKRRGHDGCNANPSFGMPSGARRTRLDFCQQHAEQGM
VSSRTGKPVRSVQEDSRISGGCEDGRHELSEDAPVHPPVTRKRARQAAAV
TPVSIPVKAEEELGGMAGSPSSATTGTGRRARWIGFTPSLPAAVKAEATR
RRAATPVERSSLKLESVAEAVAGTGVAVST*
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mRNA from alignment at L-elsbetiae_contig21:77499..80705-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21.6356.1 ID=mRNA_L-elsbetiae_contig21.6356.1|Name=mRNA_L-elsbetiae_contig21.6356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3207bp|location=Sequence derived from alignment at L-elsbetiae_contig21:77499..80705- (Laminarionema elsbetiae ELsaHSoW15)
GCGAGGCAAAGGGAGGGTAAACGTATCCAAAAAGAAAGGAGAGGCAGGCC
CGCAAAAGAGACACAAGAAATGCCCAGAAGTGAGTGTGGCCACCGTGGCT
GCAACAAGATTCCGTCGTACGGCATGGAAGGTACCAAGAAGGCCGAGCTC
TGCTCTCAGCATGCTAAGCAGGGAATGGTGAGCGTCATCAACAGGAGGTG
TGGCCACCCCGGGTGCAACGCACGGCCGTCGTACGGCATGGAAGGGATCA
AGAAGGCCAAGCTCTGCGCCCAGCACGCCAGAGACGGAATGTGGATGTGA
TCAGCAAGAGGTGTGGCCACCCAGGGGTGCAACAAGCAGCCGTCGTACGG
CATGGAAGGCACCAAGAAGGCCGAGCTGTGCTCTCAGCATGCTAGGGAGG
GAATGGTGGACGTCACCAACAGGAGGTGTGGGCATCAAGGGTGCAATAAG
CAGCCGTCATACGGCATGGGAGGCACCAAGAAGGCCGAGCTGTGCTCTCA
GCATGCCAGGGAGGGGATAGTTGACGTCGTCAAAAGGAGGTGTGGCCACC
GTGGGTGCAACAAGAAGCCGTCGTACGGCATGGAAGGTACGAAGAAGGCC
GAGCTCTGCTCTCAGCATGCCAGGGACGGGATGGTTGACGTCGTCAACAA
GAAGTGTGACCACCGAGGGTGCAACAAGAAGCCGTCGTACGGCATGGAAG
GCACCAAGAAGGCCGAGCTCTGCTCTCAGCATGCCAGGGACGGGATGGTT
GACGTCGTCAACAAGAAGTGTGGCCACCCCGGGTGCAACACACGGCCGTC
GTACGGCATGGAAGGCACCAAGAAGGCCGAGCTCTGCGCCCAACACGCCA
GGGAGGGAATGGTGAACGTGGTCAGCAAAAGATGTGGGCACCAAGGGTGC
AACAGGCATCCGTCGTACGGCATGGAAGGTACGAAGAAGGCCGAGCTCTG
CTCTCAGCACGCCAGGGGGGGAATGGTGGTCGTCGTCAGCAAGAAGAGGC
GTGGCCACGATGGCTGCAACGCCAACCCGTCGTTTGGCATGCCGTCTGGC
GCCCGCCGTACGAGGCTGGACTTCTGTCAGCAACACGCCGAGCAGGGGAT
GGTGTCATCAAGGACAGGGAAGCCGGTCCGCAGTGTGCAAGAGGACAGCC
GAATAAGTGGTGGGTGTGAGGATGGGCGACATGAGCTTAGTGAGGATGCC
CCTGTTCACCCCCCGGTCACAAGGAAGCGAGCTCGACAGGCCGCCGCCGT
TACACCGGTCTCGATCCCTGTGAAGGCAGAAGAAGAACTCGGCGGGATGG
CCGGGAGTCCCTCCAGCGCGACCACGGGAACTGGTAGACGAGCTCGCTGG
ATCGGTTTCACACCCTCGCTCCCGGCGGCAGTCAAAGCGGAGGCAACGCG
CCGAAGAGCGGCCACCCCCGTCGAGCGTTCGTCCCTGAAGTTGGAGTCGG
TAGCAGAGGCTGTCGCCGGGACAGGAGTGGCCGTCTCGACCTGAGCAGAG
TGCGCGACCTACGCTAGAGGTGAGGAGTGGCGGGGTCTTATCGTTGTTGT
ACCTTAGTTTTGTTGTTTCCCCTGTGGTGTAGTTGGTACCCCCGAACACT
TTTTGGCAGGCAGGTCGTTAGTTCGGAACTCGGCGGGAGCGACTTTTTCT
TGCGAAGTGGTTTTTTTCTCTCGCTTCCGTCCCTGTCCGTGGAGAGCGCT
CAGCGTGTGTACACAAACTTCGACCTCACCGCCGACGAGGGAAAGGGACG
GCTGAACTCTTCTCGCGACGAAAATCTTAGGCAAGCACCGCAGAAGGGGG
GAGTGAGGGCCTTGGGGAAAGGAACCCTCCTGTGTGACCACAGTTCAGCA
CTCTGGCGAGATGTCCTCGTGACAAGGAGCCCATCGACCATTGGAAATAA
ATGTGAAGACACAAATAAATAGAGTCTCCATCCGCATCTTTGTCACATGG
TGTAGGATGACCAACAGCAGTATTTTCCACGTACGTCGTCTGCAGAGGCT
GTCGGTTAAAAGCTCTTTGTTGATTTTTGCAAGCGATTGTTCTGCTTCCT
GTGGCCAACACGCAACAGCCAATCGACACGAGGGTAGCGGAGTCTGCCCC
GTCGCGTTTGGCCGTTAGAGGTAGATCAGAGGGTTGATGACTCTTTTGAT
CTCCTCTCCTTGGCGCTCTTTTCGTCTCCGGTGCTCCCAAACCTACCACG
CGTCCTGTTGCTGCTTGCCAGCCGCCAAGTTGTGACCTTGATGCCTCGAT
GCCGCTTTAGGTGTGGTTTCTGACAGCGCCCGCGTAACTTATAATTTCGG
CGCGCAAGCAGGATGGAACCTGCTTCTTGTAGTTAGTGAGGAGACGAGTA
CGTCGTCCGCAAGAAGAAGTACGGCCGTTTACTTTGCGCACCGAGACATT
ACTCTCCACAACGAGATTCAGTTTTCCTCTCTCGTGTGTGTTTCGTTGCC
CAAATCGATTCAAAACAGGTGGGACGAGAATATGATCGACATGAGTAGAC
GAGAAACCCTATCAACTTTCAGAGTTGGTGGTGACCTGTTTTCCGGGCGT
TGCGTTTTATTTTGGCCGCACGCGGTACACGGTACTGAGTGTGCCATGGT
TTCGTTCCATGCGTGGCGGGCTATATGTACATACCATGGTATAGACTAAA
CATCATGTACCTTGGGAACCGGCGGGCTGATATTTTGAACTCTGTTGACT
CTGTATAGGTTTGTCTGTTCAGCACATATACGGGGCCCTTTAAAGAATCT
GGTGTGCAATTTTTACGGATACCTGGTGTATGCAGCCTGCACCACCACCG
TATGGTAGTTGGTGCACTTTCGGCTTCGCACGGGCAACTGAGCGCATATT
TTTCACGACCGGGCTAAAACCGCGACGGTCAGTCGGAAATAATAATCGTG
CTCACCAAGAACGTCGCATTCTTTCACGTGCGCTTGCGTCACGTACGGGG
TGCGGTATCCGACTGTCGATGTCTGCTCGCCAACCGCTGCTGTTGTGTCA
GGAAGTTTTTTTTCCATCGGACCCGGCGAGCTGTCTCTTTGCTCAAAAAT
ATTTGTAGAAGGACGACAGTTTCGGTGTCGATGGAACTTCGCCGAGTGGT
CCCAATGTCAATATATTTCGGACAACACCCAACGGGCTCTATTTCACGCC
AATCAATGCGTGTCTTGTTGGGCTCTCGTGTTGCCGCACGTGGGGGACTG
TTGCCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21:77499..80705-

>mRNA_L-elsbetiae_contig21.6356.1 ID=mRNA_L-elsbetiae_contig21.6356.1|Name=mRNA_L-elsbetiae_contig21.6356.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2286bp|location=Sequence derived from alignment at L-elsbetiae_contig21:77499..80705- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGGCACCAAGAAGGCCGAGCTGTGCTCTCAGCATGCTAGGGAGGG
AATGGTGGACGTCACCAACAGGAGGTGTGGGCATCAAGGGTGCAATAAGC
AGCCGTCATACGGCATGGGAGGCACCAAGAAGGCCGAGCTGTGCTCTCAG
CATGCCAGGGAGGGGATAGTTGACGTCGTCAAAAGGAGGTGTGGCCACCG
TGGGTGCAACAAGAAGCCGTCGTACGGCATGGAAGGTACGAAGAAGGCCG
AGCTCTGCTCTCAGCATGCCAGGGACGGGATGGTTGACGTCGTCAACAAG
AAGTGTGACCACCGAGGGTGCAACAAGAAGCCGTCGTACGGCATGGAAGG
CACCAAGAAGGCCGAGCTCTGCTCTCAGCATGCCAGGGACGGGATGGTTG
ACGTCGTCAACAAGAAGTGTGGCCACCCCGGGTGCAACACACGGCCGTCG
TACGGCATGGAAGGCACCAAGAAGGCCGAGCTCTGCGCCCAACACGCCAG
GGAGGGAATGGTGAACGTGGTCAGCAAAAGATGTGGGCACCAAGGGTGCA
ACAGGCATCCGTCGTACGGCATGGAAGGTACGAAGAAGGCCGAGCTCTGC
TCTCAGCACGCCAGGGGGGGAATGGTGGTCGTCGTCAGCAAGAAGAGGCG
TGGCCACGATGGCTGCAACGCCAACCCGTCGTTTGGCATGCCGTCTGGCG
CCCGCCGTACGAGGCTGGACTTCTGTCAGCAACACGCCGAGCAGGGGATG
GTGTCATCAAGGACAGGGAAGCCGGTCCGCAGTGTGCAAGAGGACAGCCG
AATAAGTGGTGGGTGTGAGGATGGGCGACATGAGCTTAGTGAGGATGCCC
CTGTTCACCCCCCGGTCACAAGGAAGCGAGCTCGACAGGCCGCCGCCGTT
ACACCGGTCTCGATCCCTGTGAAGGCAGAAGAAGAACTCGGCGGGATGGC
CGGGAGTCCCTCCAGCGCGACCACGGGAACTGGTAGACGAGCTCGCTGGA
TCGGTTTCACACCCTCGCTCCCGGCGGCAGTCAAAGCGGAGGCAACGCGC
CGAAGAGCGGCCACCCCCGTCGAGCGTTCGTCCCTGAAGTTGGAGTCGGT
AGCAGAGGCTGTCGCCGGGACAGGAGTGGCCGTCTCGACCTGAATGGAAG
GCACCAAGAAGGCCGAGCTGTGCTCTCAGCATGCTAGGGAGGGAATGGTG
GACGTCACCAACAGGAGGTGTGGGCATCAAGGGTGCAATAAGCAGCCGTC
ATACGGCATGGGAGGCACCAAGAAGGCCGAGCTGTGCTCTCAGCATGCCA
GGGAGGGGATAGTTGACGTCGTCAAAAGGAGGTGTGGCCACCGTGGGTGC
AACAAGAAGCCGTCGTACGGCATGGAAGGTACGAAGAAGGCCGAGCTCTG
CTCTCAGCATGCCAGGGACGGGATGGTTGACGTCGTCAACAAGAAGTGTG
ACCACCGAGGGTGCAACAAGAAGCCGTCGTACGGCATGGAAGGCACCAAG
AAGGCCGAGCTCTGCTCTCAGCATGCCAGGGACGGGATGGTTGACGTCGT
CAACAAGAAGTGTGGCCACCCCGGGTGCAACACACGGCCGTCGTACGGCA
TGGAAGGCACCAAGAAGGCCGAGCTCTGCGCCCAACACGCCAGGGAGGGA
ATGGTGAACGTGGTCAGCAAAAGATGTGGGCACCAAGGGTGCAACAGGCA
TCCGTCGTACGGCATGGAAGGTACGAAGAAGGCCGAGCTCTGCTCTCAGC
ACGCCAGGGGGGGAATGGTGGTCGTCGTCAGCAAGAAGAGGCGTGGCCAC
GATGGCTGCAACGCCAACCCGTCGTTTGGCATGCCGTCTGGCGCCCGCCG
TACGAGGCTGGACTTCTGTCAGCAACACGCCGAGCAGGGGATGGTGTCAT
CAAGGACAGGGAAGCCGGTCCGCAGTGTGCAAGAGGACAGCCGAATAAGT
GGTGGGTGTGAGGATGGGCGACATGAGCTTAGTGAGGATGCCCCTGTTCA
CCCCCCGGTCACAAGGAAGCGAGCTCGACAGGCCGCCGCCGTTACACCGG
TCTCGATCCCTGTGAAGGCAGAAGAAGAACTCGGCGGGATGGCCGGGAGT
CCCTCCAGCGCGACCACGGGAACTGGTAGACGAGCTCGCTGGATCGGTTT
CACACCCTCGCTCCCGGCGGCAGTCAAAGCGGAGGCAACGCGCCGAAGAG
CGGCCACCCCCGTCGAGCGTTCGTCCCTGAAGTTGGAGTCGGTAGCAGAG
GCTGTCGCCGGGACAGGAGTGGCCGTCTCGACCTGA
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