mRNA_L-elsbetiae_contig21.6354.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21.6354.1
Unique NamemRNA_L-elsbetiae_contig21.6354.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21.6354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21contigL-elsbetiae_contig21:54586..56198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size681
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21.6354.1prot_L-elsbetiae_contig21.6354.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21 54621..55142 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815860.595274-UTR-L-elsbetiae_contig21:54585..546201622815860.595274-UTR-L-elsbetiae_contig21:54585..54620Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 54586..54620 +
1691683151.986308-UTR-L-elsbetiae_contig21:54585..546201691683151.986308-UTR-L-elsbetiae_contig21:54585..54620Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 54586..54620 +
1622815860.61919-UTR-L-elsbetiae_contig21:55142..551671622815860.61919-UTR-L-elsbetiae_contig21:55142..55167Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 55143..55167 +
1691683152.0080554-UTR-L-elsbetiae_contig21:55142..551671691683152.0080554-UTR-L-elsbetiae_contig21:55142..55167Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 55143..55167 +
1622815860.6305182-UTR-L-elsbetiae_contig21:56099..561981622815860.6305182-UTR-L-elsbetiae_contig21:56099..56198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 56100..56198 +
1691683152.01977-UTR-L-elsbetiae_contig21:56099..561981691683152.01977-UTR-L-elsbetiae_contig21:56099..56198Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 56100..56198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815860.6057212-CDS-L-elsbetiae_contig21:54620..551421622815860.6057212-CDS-L-elsbetiae_contig21:54620..55142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21 54621..55142 +
1691683151.9980156-CDS-L-elsbetiae_contig21:54620..551421691683151.9980156-CDS-L-elsbetiae_contig21:54620..55142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21 54621..55142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21.6354.1

>prot_L-elsbetiae_contig21.6354.1 ID=prot_L-elsbetiae_contig21.6354.1|Name=mRNA_L-elsbetiae_contig21.6354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MVNVFSKRCGHDGCDANPSFGMPSGASRTRRELCRQHAEQGMVASKTGKP
VRGVQGDSRRSGGREDGRHELSEDAPVHPPVTKKRARQAAAITTPVTIPV
KAEEEVAGAAGSSSSTTTGIGKRARRIDFAPSVPAAVKAEATRRRAATPV
ERSFLESESAAEAVAETGVAVST*
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mRNA from alignment at L-elsbetiae_contig21:54586..56198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21.6354.1 ID=mRNA_L-elsbetiae_contig21.6354.1|Name=mRNA_L-elsbetiae_contig21.6354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1613bp|location=Sequence derived from alignment at L-elsbetiae_contig21:54586..56198+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCGAGCTCTGCTCTCAGCACGCCAGGGGGGGAATGGTGAACGTCTTC
AGCAAGAGGTGTGGCCACGATGGCTGCGACGCAAACCCGTCGTTTGGCAT
GCCGTCTGGCGCCAGCCGTACGAGGCGGGAATTATGTCGGCAACACGCCG
AGCAGGGCATGGTGGCATCAAAGACAGGGAAGCCGGTCCGCGGTGTGCAA
GGGGACAGCCGAAGAAGTGGTGGGCGTGAAGATGGACGTCATGAGCTTAG
TGAGGATGCCCCTGTTCACCCCCCGGTAACAAAGAAGCGAGCCCGACAGG
CCGCCGCCATTACAACACCGGTAACGATCCCTGTGAAAGCAGAAGAAGAA
GTTGCTGGGGCAGCCGGGAGCTCCTCCAGCACGACGACGGGAATTGGCAA
ACGAGCTCGCCGGATCGATTTCGCACCGTCGGTCCCGGCAGCAGTCAAAG
CGGAGGCAACGCGCCGAAGAGCGGCCACCCCCGTCGAACGTTCGTTCCTG
GAGTCGGAGTCGGCGGCAGAGGCGGTCGCCGAGACAGGAGTGGCCGTCTC
GACCTGAGCAGAGTGCGCGACCTACGCTGGAGGTGAGGAGTGGCGGAGTC
TTATCGTTGTCGTACCTTAGTTTTTTGTTTTTCGCCTTCAGCTAACGTTT
TCATTACTCTCCATCCGCATATTTGTCACATGGTGTGGGATGAGCAGCAA
CAGCAGTAATTTTCCACTATCTTCGATTATCCTTTGAAAGGTGGTTGGAA
TATGTTTCGTTGATATTTGCAAGCGGTTGTTCTCCTCCCTGTGGCCAATA
TGGTACGCAACAGGTCAATCGGCACGAGGGTATCAAAGTCTTCCCCGTCG
TGTTTCGCCGTCAGGCGTAGGTCAGAGGACTAATGGCGGGATAAACCCCC
TCTCCCTGGTGCCTTTTCCATTTGCAGTGCTCCCGTATGTACTGTGCTGC
CTGTTGCTGTTTGCCAGCTACCGAGTCGTGATCTTGACGCCTCGATGCCG
CGCTAGAAATACTCCCTCGACAGCGCCCGCGTAACTCATCATTTTGGCGC
GCAAAGCATGATGTTTGGAGCCTACAAAAAAATTGAAAGCGATTTCGTGA
GTAAATATTACTTCGACTTCATTGTTGACGAGGGTGGGGAGTGCTGAACC
CTGCTCGCGATAAAAAAACCCTAGGCAGGCACCGCAGGAGGGGGTCCAAC
CCTCCCCTCCTATGTGACCCCGGTTGGGTCGTATGGCTAGAGTAGAAGTG
GAGGATGGGGGCCAGAGGGGGGTCGTATGGCTAGAGTAGAAGTGGAGGAT
GGGGGCCAGAGGGGCAGACGACAAAATCCAATAATGGGCAGACAAAAAAA
AAAGAAAAAGTTCTGCTTCTATTGAGGAGAAGAGTGATGCCGTGTCCGCA
AGAATGCCCCCCTCCTACCCTACGCAGCCAGACAAATCTCTCTGCAACAA
GACTTAATAGTTTTGCACCCCTCTCGTATTGTACGTGTTTCGTTGCCTGG
ATCGCTTTCGGCAGGTGGGACTAGGAACATGAACGAGACGAGTGATCCGA
ACGCGGAACCGTCCGGCCTAACTTCCAGAGCTGGTGATGGGCTTTCTTTC
TGGGCGTTGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21:54586..56198+

>mRNA_L-elsbetiae_contig21.6354.1 ID=mRNA_L-elsbetiae_contig21.6354.1|Name=mRNA_L-elsbetiae_contig21.6354.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig21:54586..56198+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTCTTCAGCAAGAGGTGTGGCCACGATGGCTGCGACGCAAA
CCCGTCGTTTGGCATGCCGTCTGGCGCCAGCCGTACGAGGCGGGAATTAT
GTCGGCAACACGCCGAGCAGGGCATGGTGGCATCAAAGACAGGGAAGCCG
GTCCGCGGTGTGCAAGGGGACAGCCGAAGAAGTGGTGGGCGTGAAGATGG
ACGTCATGAGCTTAGTGAGGATGCCCCTGTTCACCCCCCGGTAACAAAGA
AGCGAGCCCGACAGGCCGCCGCCATTACAACACCGGTAACGATCCCTGTG
AAAGCAGAAGAAGAAGTTGCTGGGGCAGCCGGGAGCTCCTCCAGCACGAC
GACGGGAATTGGCAAACGAGCTCGCCGGATCGATTTCGCACCGTCGGTCC
CGGCAGCAGTCAAAGCGGAGGCAACGCGCCGAAGAGCGGCCACCCCCGTC
GAACGTTCGTTCCTGGAGTCGGAGTCGGCGGCAGAGGCGGTCGCCGAGAC
AGGAGTGGCCGTCTCGACCTGAATGGTGAACGTCTTCAGCAAGAGGTGTG
GCCACGATGGCTGCGACGCAAACCCGTCGTTTGGCATGCCGTCTGGCGCC
AGCCGTACGAGGCGGGAATTATGTCGGCAACACGCCGAGCAGGGCATGGT
GGCATCAAAGACAGGGAAGCCGGTCCGCGGTGTGCAAGGGGACAGCCGAA
GAAGTGGTGGGCGTGAAGATGGACGTCATGAGCTTAGTGAGGATGCCCCT
GTTCACCCCCCGGTAACAAAGAAGCGAGCCCGACAGGCCGCCGCCATTAC
AACACCGGTAACGATCCCTGTGAAAGCAGAAGAAGAAGTTGCTGGGGCAG
CCGGGAGCTCCTCCAGCACGACGACGGGAATTGGCAAACGAGCTCGCCGG
ATCGATTTCGCACCGTCGGTCCCGGCAGCAGTCAAAGCGGAGGCAACGCG
CCGAAGAGCGGCCACCCCCGTCGAACGTTCGTTCCTGGAGTCGGAGTCGG
CGGCAGAGGCGGTCGCCGAGACAGGAGTGGCCGTCTCGACCTGA
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