mRNA_L-elsbetiae_contig21.6351.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig21.6351.1
Unique NamemRNA_L-elsbetiae_contig21.6351.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig21.6351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig21contigL-elsbetiae_contig21:15462..16147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size437
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig21.6351.1prot_L-elsbetiae_contig21.6351.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig21 15462..15964 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815860.476739-CDS-L-elsbetiae_contig21:15461..155431622815860.476739-CDS-L-elsbetiae_contig21:15461..15543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21 15462..15543 +
1691683151.9130538-CDS-L-elsbetiae_contig21:15461..155431691683151.9130538-CDS-L-elsbetiae_contig21:15461..15543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21 15462..15543 +
1622815860.4899623-CDS-L-elsbetiae_contig21:15794..159641622815860.4899623-CDS-L-elsbetiae_contig21:15794..15964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21 15795..15964 +
1691683151.9250467-CDS-L-elsbetiae_contig21:15794..159641691683151.9250467-CDS-L-elsbetiae_contig21:15794..15964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig21 15795..15964 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815860.5050817-UTR-L-elsbetiae_contig21:15964..161471622815860.5050817-UTR-L-elsbetiae_contig21:15964..16147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 15965..16147 +
1691683151.9342017-UTR-L-elsbetiae_contig21:15964..161471691683151.9342017-UTR-L-elsbetiae_contig21:15964..16147Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig21 15965..16147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig21.6351.1

>prot_L-elsbetiae_contig21.6351.1 ID=prot_L-elsbetiae_contig21.6351.1|Name=mRNA_L-elsbetiae_contig21.6351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
SCREKRATFVPPLAGNNNYPSPRNRSRAPGATGAHYILDAAGRQAWATGA
GCHYVGSCTWNRCRMDTSCLIVFGSFFVVACVG*
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mRNA from alignment at L-elsbetiae_contig21:15462..16147+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig21.6351.1 ID=mRNA_L-elsbetiae_contig21.6351.1|Name=mRNA_L-elsbetiae_contig21.6351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=686bp|location=Sequence derived from alignment at L-elsbetiae_contig21:15462..16147+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTGCCGTGAAAAAAGAGCCACCTTCGTTCCACCACTTGCCGGTAACAA
CAACTATCCTTCGCCGCGCAACCGCAGTCGAGGTGCGCAGACTACTGTTA
CCTGGAATTTTGAGCTTCGCTAGTTTTTGGAGACCCCGCCAGGCTCGTAA
GTTTCTTACCTGTTAGAGCGCTCCCATCCCAACCGTTTGAGTTCCCCTGG
GGGTGTTTGACAAACCCACGTAGGAATACCAGGGAGATTACGGTTTGCCC
CGAAATATTGCCATTGACGTATGTGGCATATGCAACATGGCTGTTTGTTG
TATTTCCTCCTCCGTTTGCCTGCCCGTTTTCAGCCCCAGGAGCAACGGGC
GCACATTATATCCTGGATGCGGCAGGACGGCAGGCTTGGGCGACGGGTGC
TGGGTGTCATTACGTCGGCTCCTGCACGTGGAACAGATGCAGAATGGACA
CTTCATGTTTGATTGTGTTTGGGTCTTTTTTTGTTGTCGCCTGTGTCGGC
TGAATCGTGCTTGACTGGCATACGTCCGCATTTGTTGGCAAATGCCACGC
CCAGGATGCAGACATTTCCGCGCTTGCTCTAGGGTAGGTTGTTGGTTGGA
AGCTTGTCTGATCCGTCTGGCGTTTCTAAACAAGGTGGACTCATATCGGC
AGTTTGGTTGTGTGGTACTGGTAAGGTCGATAGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig21:15462..16147+

>mRNA_L-elsbetiae_contig21.6351.1 ID=mRNA_L-elsbetiae_contig21.6351.1|Name=mRNA_L-elsbetiae_contig21.6351.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig21:15462..16147+ (Laminarionema elsbetiae ELsaHSoW15)
TCCTGCCGTGAAAAAAGAGCCACCTTCGTTCCACCACTTGCCGGTAACAA
CAACTATCCTTCGCCGCGCAACCGCAGTCGAGTCCTGCCGTGAAAAAAGA
GCCACCTTCGTTCCACCACTTGCCGGTAACAACAACTATCCTTCGCCGCG
CAACCGCAGTCGAGCCCCAGGAGCAACGGGCGCACATTATATCCTGGATG
CGGCAGGACGGCAGGCTTGGGCGACGGGTGCTGGGTGTCATTACGTCGGC
TCCTGCACGTGGAACAGATGCAGAATGGACACTTCATGTTTGATTGTGTT
TGGGTCTTTTTTTGTTGTCGCCTGTGTCGGCTGACCCCAGGAGCAACGGG
CGCACATTATATCCTGGATGCGGCAGGACGGCAGGCTTGGGCGACGGGTG
CTGGGTGTCATTACGTCGGCTCCTGCACGTGGAACAGATGCAGAATGGAC
ACTTCATGTTTGATTGTGTTTGGGTCTTTTTTTGTTGTCGCCTGTGTCGG
CTGA
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