mRNA_L-elsbetiae_contig2097.6343.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI) HSP 1 Score: 639 bits (1647), Expect = 1.670e-203 Identity = 448/577 (77.64%), Postives = 484/577 (83.88%), Query Frame = 1 Query: 1 ERAVTLEGGKWRRASEEAEARAAAEKVAAYEQGTADRGRQAEAEASQLQDAAEKALAEVKQGARTTIEEMAARHSEELEEERKRVSADEAVAREAALEAAREEFSQQQAKAVANXXXXXXXXXXXRAERDRASAVEAARERERLATEKVQEELRRAKTEWTAEKRRLKEQTTLLEEAEQKAKDDLLRAMANSSQATQRARARWEEGQKSAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAQAEAMGDRIRKQAGVSLQKAEGMYADSQRENGRLAAALENCRKELEECQSSLLHSEADLKEQSVSHSIDTWRMIVAALNLRLGNEKATKRLREEAAEREAEAESTFEAQKGALSAVLEELLELAFDSRRRFAAMQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSETSEQAEQLRAIDERTRFARNEAKRRKAQAKRERQEERGGGAGG 1731 ERAV LEGGKW+RASEEA GTADRGRQAE EA QLQDAAEKAL EVKQGARTTIEEMAARHSEELE ERKRVS +EAVAREAAL+AA EEFSQQQ KAVANXXXXXXXXXXX AVEAA+ERERLATEKVQ+ELR +KTEW AE+RRLKEQ TLLEEAEQKAKD+LLRAMANSSQATQ+ARARWEE QKS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AQAEAM +RIRKQA VSLQKAEG+YA+SQ+E L A LE CR LEEC+SSL+HSEADLKEQSV+HS+ TWRM VA++NLR+ NEKA K+LR+EAA+REAEAES FEAQK L V++EL+++AFDSRRRFA+MQETLVNHKRE LEEQRLLLQREFRELEGQAK+AEKE HAHSRQSAIGPDGM+IPARARKKRRLDEELEGLLE MEAKRKALVAVDGKL LAESRA K+EEMKGLERTLVQVLVEQQKKLLSLLSET EQAEQL+ IDERTR AR+EAKRRKAQAKR+ Q+ERGGG G Sbjct: 1727 ERAVELEGGKWKRASEEAXXXXXXXXXXXXXXGTADRGRQAEVEALQLQDAAEKALEEVKQGARTTIEEMAARHSEELEAERKRVSDEEAVAREAALKAAGEEFSQQQTKAVANXXXXXXXXXXXXXXXXXGLAVEAAKERERLATEKVQDELRSSKTEWAAERRRLKEQITLLEEAEQKAKDNLLRAMANSSQATQKARARWEESQKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAQAEAMAERIRKQANVSLQKAEGLYAESQQEKDLLTAELEKCRNTLEECESSLVHSEADLKEQSVTHSVATWRMAVASINLRVVNEKAAKQLRDEAAQREAEAESMFEAQKETLYTVVDELMDMAFDSRRRFASMQETLVNHKRE-------------------------LEEQRLLLQREFRELEGQAKNAEKEAHAHSRQSAIGPDGMIIPARARKKRRLDEELEGLLEAMEAKRKALVAVDGKLGGLAESRAEKEEEMKGLERTLVQVLVEQQKKLLSLLSETGEQAEQLQEIDERTRSARDEAKRRKAQAKRQ-QQERGGGVAG 2277
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A835YVZ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ6_9STRA) HSP 1 Score: 170 bits (430), Expect = 2.860e-40 Identity = 192/542 (35.42%), Postives = 274/542 (50.55%), Query Frame = 1 Query: 31 WRRASEEAEARAAAEKVAAYEQGTADRGRQAEAEASQLQDAAEKALAEVKQGARTTIEEMAARHSEELEEERKRVSADEAVAREAALEAAREEFSQQQAKAVANXXXXXXXXXXXRAERDRASAVEAARERERLATEKVQEELRRAKTEWTAEKRRLKEQTTLLEEAEQKAKDDLLRAMANSSQATQRARARWEEGQKSAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAQAEAMGDRIRKQAGVSLQKAEGMYADSQRENGRLAAALENCRKELEECQSSLLHSEADLKEQSVSHSIDTWRMIVAALNLRLGNEKATKR-------LREEAAEREAEAESTFEAQKGALSAVLEELLELAFDSRRRFAAMQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLL-SETSEQAEQLRA 1632 W RA +E EAR+AA++ A+ +G A+R QA+ E +L+ A E+AL EVK GAR I++++ARH +L+E R +A A A+ A+R E+ + +RD+ +AV+AA +RE L E+ EEL+ +T+W E R L + + +++ A QRARA+WE+ Q +A+ XXXXXXXXXXXXXXXXXXXXXXXX A + +S++ S+ W+ E+A + A+A + A GAL A E SR + AAM++ LVN+KREVL+DHK+QS +L ++L+ L+RDR+ E ++ L + E E A+DAE+E HSRQSA+G DG V A R++RRLDEELE L +E +R + A D +L+ L E+R K+ EM+ LER LV VLV+QQK+LLS+L +E E E LRA Sbjct: 646 WERAVQELEARSAADQKVAHVRGFAERDAQAKTEIERLRLAVERALTEVKSGARVAIQDLSARHERDLQETEARAAAQAAXXXXXAVAASRVEWESECXXXXXRAVTAAQAEARTLGDRDKRAAVDAAHQREALRAERATEELQTLRTKWATESRDLIRAADEASQEVVRLREETAAAXXXXXXXAQRARAKWEDAQAAALAECAEEGTRSTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDARAXXXXSQXXXXXXXXXXXXXXXXAAARSLAGSLRAWQAAXXXXRRDAARERAERARXXXXXXXXXXXXXXXAQALAALRAD-GALVAAAEA------HSREQRAAMRDALVNYKREVLVDHKLQSEALRRQLEQLSRDREVAENRKSELLKTAAEAERVARDAERELQQHSRQSALGADGRVSAAHQRRRRRLDEELEEALRALEGRRAEVAAADARLAQLGEARIAKEGEMQALERELVGVLVDQQKRLLSILGAERDEDDEGLRA 1180
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A7S3ZZB9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZB9_9STRA) HSP 1 Score: 116 bits (291), Expect = 4.930e-23 Identity = 75/166 (45.18%), Postives = 106/166 (63.86%), Query Frame = 1 Query: 1150 MQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSETSEQAEQLRAIDERT 1647 M +TLVNH+R L+ HK +ST L EL+ + RDRD LE +R + E++ + E+ HAHS+ SAI DG V A A+KK+R+D++ E LL +E +R AL D +L L ++R K+++MK LER LV++LV QQKKLL++L E A R +DERT Sbjct: 1754 MHDTLVNHERATLVAHKRRSTELGMELEVIVRDRDELEAERDKILEYVDEMQESVRAIEQAIHAHSKNSAISSDGRVNVAHAKKKKRMDDDHEMLLLGVEKQRNALSETDARLQRLNDARERKEDDMKELERRLVELLVSQQKKLLAILQEA---AHTTRELDERT 1916
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A7S2SNH8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SNH8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.200e-18 Identity = 66/151 (43.71%), Postives = 90/151 (59.60%), Query Frame = 1 Query: 1150 MQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSE 1602 M +TLVNHKRE+L H+ QS SL K+L+++ +RD LE ++ L E E+E K E + HS+QSAI +G + A ARKK+RLDEE E LLE +E+KR++L A LV+VLV+QQKKLL +LS+ Sbjct: 126 MNDTLVNHKREILKQHQSQSASLQKQLEAIGVERDGLETRKDRLLDELSEMEISIKSLETQIREHSQQSAIS-EGRINVAHARKKKRLDEEYEVLLEAVESKRRSLTAXXXXXXXXXXXXXXXXXXXXXXXXXLVEVLVDQQKKLLKILSD 275
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A7S2G7M7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G7M7_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 6.500e-18 Identity = 66/165 (40.00%), Postives = 97/165 (58.79%), Query Frame = 1 Query: 1123 FDSRRRFAAMQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSETSEQA 1617 F+ +R + M TLV HKRE LI++K +S SL +LD++ + D L ++ HS+QSAI +G V A ARKK+RLDEE E LL++M KR + +D K++ AE R K++ +K LER +V+VLV+QQKKLL++L++ A Sbjct: 14 FEGKR--SQMHATLVEHKREELIENKTKSQSLTAQLDAINLECDGLIRRKNXXXXXXXXXXXXXXXXXXXXRVHSQQSAIS-EGRVNVAHARKKKRLDEEYENLLQIMHKKRDDISVLDKKIAACAERRQDKEDALKDLERQIVEVLVDQQKKLLAILTDAGRSA 175
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A7S3PMA7_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PMA7_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 8.160e-16 Identity = 55/149 (36.91%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 1150 MQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLL 1596 M++ LVN+KR+ L+ HK +ST + +L L+ + E++R +++GQ ++ E++ + SAI +G V A A++KR LD+ELE +LE E KR L ++ K+S + + + E+K LE LV++L+EQQKKLL +L Sbjct: 39 MRDILVNYKRDTLLQHKARSTVIQTDLAKLSEIKQKSEKERNAYLSAILQIDGQIRELERQLRELGKVSAI-QNGRVNVAHAKRKRVLDQELEHVLEKAEMKRDGLAKIEEKISQIGDEANENENELKRLESQLVEILIEQQKKLLGIL 186
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A7S1BNZ5_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BNZ5_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.820e-15 Identity = 61/161 (37.89%), Postives = 100/161 (62.11%), Query Frame = 1 Query: 1120 AFDSRRRFAAMQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSE 1602 A + RR+ A M + L NHKR+ L+ + ++ + ELD+++ +R+ + + L+R+ +E K+ E++ HS++S I G + A A+KK+RLD+E E L+E +E KR + V+ L+ L ++ +E+MK LER+ V VL+EQQK LLS LSE Sbjct: 685 AEEFRRQKAEMYKVLTNHKRDDLVRQRAETVRVATELDTISSERERVNYKFDFLKRQMGSMEDSLKELEEQMQTHSKKSTI-QGGRLNLAHAKKKKRLDDEFEQLIECIELKRSEMNQVEIHLNKLDSKKSDAEEKMKVLERSFVDVLMEQQKCLLSTLSE 844
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A2R5GHI1_9STRA (Copine-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHI1_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 5.480e-15 Identity = 63/157 (40.13%), Postives = 98/157 (62.42%), Query Frame = 1 Query: 1129 SRRRFAAMQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLS 1599 SRRR M + LVNHKRE L+ HKV++ + +L L R+ LE+QR LQR+ LEGQ + S+ SA+ DG + A++KRRLD+E E LL+ + +RK + AV+ +++ + + +K+E+++ +E LV +LVEQQK LL+ L+ Sbjct: 1530 SRRR---MHDILVNHKREDLLQHKVETGVIQDDLKKLQHSREALEKQREQLQRDVGYLEGQIRGVXXXXEQLSKVSAV-QDGQINVTHAKRKRRLDQEFEHLLDRVAHQRKQIDAVNERIAAVQKDAELKEEDLREMEAGLVAILVEQQKLLLAELA 1682
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A5A8D0A0_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D0A0_CAFRO) HSP 1 Score: 89.7 bits (221), Expect = 1.010e-14 Identity = 62/158 (39.24%), Postives = 100/158 (63.29%), Query Frame = 1 Query: 1144 AAMQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFR-------ELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLL 1596 AA+ +TL +HKRE+L++HKV+STS K L L+ EQRL +QR+ R E EG K E+E S+QS I DG V + +R+K+RLD +L+ L + +R AL ++ ++++L ++R K+EE++ +E LV LV+QQ++L+++L Sbjct: 806 AALHDTLTSHKRELLVEHKVKSTSCQKALAELS-------EQRLDIQRQHRRMLQFVSETEGAVKAVEREASELSKQSVI-QDGKVNVSLSRRKKRLDRDLDAHLAKLGDQRAALTDLETQMAELEDARVEKEEELRFVEGQLVTTLVQQQRRLMTVL 955
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Match: A0A7S3M7I6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M7I6_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.160e-13 Identity = 67/240 (27.92%), Postives = 126/240 (52.50%), Query Frame = 1 Query: 883 LEECQSSLLHSEADLKEQSVSHSIDTWRMIVAALNLRLGNEKATKRLREEAAEREAEAESTFEAQKGALSAVLEELLELAFDSRRRFAAMQETLVNHKREVLIDHKVQSTSLHKELDSLARDRDHLEEQRLLLQREFRELEGQAKDAEKETHAHSRQSAIGPDGMVIPARARKKRRLDEELEGLLEVMEAKRKALVAVDGKLSDLAESRAVKDEEMKGLERTLVQVLVEQQKKLLSLLSE 1602 LEE + SL + + K + S+ W+ + +R ++ + +EAA+R A+ + +A+ + ++ L L D+ L H+ LI + + + ++L+ L ++D LEEQ+ + + ++E Q ++ E +H+++S++ +G + A ARKKRRLD ELE LLE +E KR + +D +++ R + EM +ER LV++L+EQQK ++ L + Sbjct: 400 LEETEDSLYDLQQECKRVKMDSSLAVWKSVTKIFQMRQRFQEGIAQFDKEAAQRYADIKQEMQAKLDHSTWMILRLASLLQDNDVARINTLAILTGHRTAELISSRNKIQVMEQDLERLTMEKDSLEEQKEMFDGDITQMERQVRELEDMIRSHNQESSMS-NGRINVAHARKKRRLDTELEQLLESIEQKRHTMSTIDQRITQKGHERDDLELEMIDVERKLVEILLEQQKLIMGRLDD 638 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2097.6343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2097.6343.1 >prot_L-elsbetiae_contig2097.6343.1 ID=prot_L-elsbetiae_contig2097.6343.1|Name=mRNA_L-elsbetiae_contig2097.6343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=509bp MAARHSEELEEERKRVSADEAVAREAALEAAREEFSQQQAKAVANARAAAback to top mRNA from alignment at L-elsbetiae_contig2097:11148..19321- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2097.6343.1 ID=mRNA_L-elsbetiae_contig2097.6343.1|Name=mRNA_L-elsbetiae_contig2097.6343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8174bp|location=Sequence derived from alignment at L-elsbetiae_contig2097:11148..19321- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2097:11148..19321- >mRNA_L-elsbetiae_contig2097.6343.1 ID=mRNA_L-elsbetiae_contig2097.6343.1|Name=mRNA_L-elsbetiae_contig2097.6343.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3054bp|location=Sequence derived from alignment at L-elsbetiae_contig2097:11148..19321- (Laminarionema elsbetiae ELsaHSoW15)back to top |