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Homology
BLAST of mRNA_L-elsbetiae_contig208.6282.1 vs. uniprot
Match: D7FS41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS41_ECTSI) HSP 1 Score: 114 bits (285), Expect = 1.040e-24 Identity = 69/126 (54.76%), Postives = 84/126 (66.67%), Query Frame = 3
Query: 42 MFPPM-DAADD---------TGQHAP-KVEVKSAEERDRCGIQNGLKANARLIRRVENALEGGTPYLGTSASAILFGELSSLRREQALLLEKDVRLQERANLLLSRAGDGNEDASASSDVESYKAT 386
MFPPM + ADD Q +P K VK+AEER+ G++ L A +RLI+RV +ALEGGTPYLGT+ A+LFGELSSLRRE+ALL EKD+RLQER NLLL+ + SSD E AT
Sbjct: 1 MFPPMSNLADDDDAVVVEASNAQFSPLKSAVKAAEEREAAGVERSLAAVSRLIQRVTDALEGGTPYLGTNDQAVLFGELSSLRREKALLREKDLRLQERTNLLLTTTRTARGEDGGSSDGEQPSAT 126
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-16_004440.1 |
| Exons | 2 |
| Model size | 1856 |
| Cds size | 495 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815854.5437899-UTR-L-elsbetiae_contig208:15863..17183 | 1622815854.5437899-UTR-L-elsbetiae_contig208:15863..17183 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig208 15864..17183 - |
| 1691683147.8589675-UTR-L-elsbetiae_contig208:15863..17183 | 1691683147.8589675-UTR-L-elsbetiae_contig208:15863..17183 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig208 15864..17183 - |
| 1622815854.575928-UTR-L-elsbetiae_contig208:19212..19253 | 1622815854.575928-UTR-L-elsbetiae_contig208:19212..19253 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig208 19213..19253 - |
| 1691683147.8940475-UTR-L-elsbetiae_contig208:19212..19253 | 1691683147.8940475-UTR-L-elsbetiae_contig208:19212..19253 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig208 19213..19253 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815854.5536263-CDS-L-elsbetiae_contig208:17183..17528 | 1622815854.5536263-CDS-L-elsbetiae_contig208:17183..17528 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig208 17184..17528 - |
| 1691683147.8685641-CDS-L-elsbetiae_contig208:17183..17528 | 1691683147.8685641-CDS-L-elsbetiae_contig208:17183..17528 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig208 17184..17528 - |
| 1622815854.5634198-CDS-L-elsbetiae_contig208:19062..19212 | 1622815854.5634198-CDS-L-elsbetiae_contig208:19062..19212 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig208 19063..19212 - |
| 1691683147.8771644-CDS-L-elsbetiae_contig208:19062..19212 | 1691683147.8771644-CDS-L-elsbetiae_contig208:19062..19212 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig208 19063..19212 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig208.6282.1 >prot_L-elsbetiae_contig208.6282.1 ID=prot_L-elsbetiae_contig208.6282.1|Name=mRNA_L-elsbetiae_contig208.6282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MFPPMDAADDTGQHAPKVEVKSAEERDRCGIQNGLKANARLIRRVENALE
GGTPYLGTSASAILFGELSSLRREQALLLEKDVRLQERANLLLSRAGDGN
EDASASSDVESYKATYIRAYVAMANVILAPYCHHRHCCGLSTQSVSRPPF
LTNGVCPLVRVTYI* back to topmRNA from alignment at L-elsbetiae_contig208:15864..19253- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig208.6282.1 ID=mRNA_L-elsbetiae_contig208.6282.1|Name=mRNA_L-elsbetiae_contig208.6282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3390bp|location=Sequence derived from alignment at L-elsbetiae_contig208:15864..19253- (Laminarionema elsbetiae ELsaHSoW15)
CAAACCTTCGACCCTACGTAGTCTATGTGTGTACAGCTCGCATGTTTCCT
CCGATGGACGCCGCAGATGATACTGGACAACACGCCCCGAAGGTCGAAGT
CAAGAGCGCAGAGGAGAGAGATCGTTGTGGTATACAAAATGGACTAAAGG
CAAATGCCAGGCTGATCAGACGAGTGGAAAACGCTCTCGAGGTAAGCAGT
AGAGGCAAGGCGCGATGCACTCTGGACGGCTGCTCCCCTGCCCATTGACT
TCGGCGGGATTTGGTTTGCCTGCACAAACAGAGTGGGCAGTGGTTGGTAT
TTAGTAGTCGAGCTCCCTTCGCATGCATGTAAGTGTGGAGATCCGCATAA
CCCGCTACCTTGTGATGCCCCGCTCGCATTTTCCAGTCTTATTCCTGCCA
CGCGCAAATCAGTACATTACGGTGCATGTACTTACGTTGTCGGGGCGACG
ATATTGCTCGCAGCAGCGCCTGATCAAAACAAGAGCAAACCAAACGATAG
GTGACGCATACCCAACTCGATGTCCCAATCTCCATCTAGGCCGGAGATTT
ATTCTGCGGGCCCGTGTTATTACTAGTCAAGCGAACGTTGACTAGAAGTC
TAGATTGCAGCAGAATCTAGATAGGCCCTGTTGATTATGCACGTATCGCT
TTGGTTATAGCATCTTACCGATTCACCCAGCACCGAGATTGCAGCACCTG
GGCGAGAGCCATATCCCGATGGACTATTAAGCACAATTATCAAACGTTAT
TATTACGTCACTATATGGAATACCGAAAATTATCACGGGAGTCCCGTCTC
CAATGTGGGTTAGGTTCCATTTTTGATTATCTACTTATCTTTCAAAACGT
GCCGGCAGCGAGTAGGCCAATGATGAATTATTGACTATTGATGGTGACAT
GTTGACAGCATCCTGGCATCCTGGCGGACCAAACATATCTATTAGATAAG
TAAACATCTAGACTACTGTAAATACGTACTCCGAGTAGTCTACTACTCTA
TGCTCTCGCTGTCATACCTCTTGGATTTGTCGCGTTTGCGGCCGTCGTCT
CAGCATCACTTCAGAAACTCCTGAGTAGTTCGTGTGTGTGTGTGCTTTGC
ATGCCATTTTGGATGCGATGACGGTTTAAAAAAATATCTTACAAAGAACG
TCAGCGATCGTCGTTGACCTGCGAAAATTTCGTTTTTTACACCACGTTTT
CTATTGTTTTGAGATGCGTTGTATGCAGGCATAATTTTGAAATCGAGACG
TTACCCCGTGGTGTAAGCGGGAGAGGCATGGCGATGAGAAGTCATCTTTG
TCGGTTACGGAAGAGTTGCAGGCAGCGGAAGGGGCACTACAACACAACCG
AGCGGCCTCTTATTATCGGCGGGCACCACTGTATTGTAGCAGGGGGTAGA
CTTTGGAACAAGGTACTAAATGTTACTGCAGCAACACCTATTTCTGTTGC
TTCAACTGCAAGATTGACCCCCTCAGAAAGAAACTGAAATTTCGGCCGAG
GCTGTTTTTATTCTGCGAAGCCATCTAGAAGTGTCGCCGTACTTCACACA
GGAATTATTACTCACCACGGAGCCTCTTATTCAATCTGAGCCTGCCTTCC
TAGAAAACGCGTTTCGTATGAGTGGGGCGGTACGGCGTGTTGCCTATTGT
GTTCGTTATACACACCACATATATATTGAGTTTTATGTGGTTGCCACCCT
AATTACCTTTTATCTTTGAGTGCAGGGTGGAACCCCTTATCTGGGAACAA
GCGCTTCGGCAATTTTATTCGGGGAGCTATCGTCGCTGCGGCGAGAACAG
GCTCTCCTTCTGGAGAAAGATGTGCGCCTGCAGGAGCGGGCGAACCTGTT
GCTGTCTCGGGCCGGGGACGGCAACGAAGACGCTAGCGCGTCCTCAGATG
TGGAGAGCTACAAAGCTACATACATACGTGCATACGTTGCGATGGCAAAT
GTGATTTTAGCACCGTACTGCCACCACAGACACTGCTGTGGTCTATCCAC
ACAGTCAGTCAGTCGACCACCTTTCCTCACAAACGGTGTCTGCCCCCTCG
TGCGTGTTACATACATCTAGATGCCGTTACGGGAGCTGTGGCCGTTATGA
GCAGCCCGGCTGTTTGAGCTTTCTGTCCCCCTCCGCTTGAACAGCTTGAA
CAGCTGCTTATGACAAACGTCAGTCAGCCCTTTCCTGCAAACCTGCAGCG
TCTTTTCTTTCAACGATGTGCCGGCCAACGGCAAAAAACCAGGGTACTCC
TCGGGAACGTTTTTTTTTACGGGAACAGTTTGGGCAGTACCTCGACATGA
CGGGAGCACTTTAGCGGTACGCGGTTTCTGTATTTTTTGCCGGTACTGCC
TTCGGCGATACCCGGTTCTGCAAATATTGACGGGTTAGGGTTAGGGTTAG
GGTAAGTAGCACTGAGACTCGCCTCTAAACTGCTCATTATTCTGCTGGAC
CACACGCGCTGCGTTGTGGGCAGGGGTGCGTGTCTGCGTCCACTGCCCTG
CTGTGGTCCACGCATCGACCCAAGAAGGTTCTACCGAAAAGGAACCAAAC
ACCAGCCCAGAACCACACAAAAAAAAAAATTCTCTAAAAAAAAAACAATA
CAAAAAAAAGTGTACGTTGGTACGTTGGTTGGGTTTGAACTCCAGTTCTT
TTCAGTGGACGAGATACATTGTTATATGTTTGACTATTGTAACGTTTCGG
CGGTACTATTTGACCGGTACTACTATTTGCCGTTACCTTTTTGGCGGTAA
CACAATATGCCGGCACTTTTCAGGCGGGAAACGGTTCTTGGTTTTTCGGC
GGTACTTTTCTGGCGGTACTGCAATATGCCGGTACTTTTTAGGCGGGAAA
CGGTTCTTGGTTTTTCGACGGTACTTTTCTGGCGATACTGCAATATGCCG
GTACTTTTACGGTACTTTTAGGCGGTACGCGGTTTCTGTATTTTTTGCCG
GTACCGCCTTCGGTGGTACCCGGTTCTCCAGATTTTGACGGAAATTCCGG
CAAGTACCGGATCCGCCTACCAGCCCCGGGAAAAAACCCCGGGAAAATTC
CCGAGGAGTATCCTGCAAAAAACAGCCCTCCCTGTAAGGTTGAGATGGCA
CACACGCACAGCCCCCCACTCGATGACTGTTCGCCTATCTCGACTACCTC
GAGACAGATGAAGGCAGGAGAGTTTTTCTGTAACGTTCATGACACGCACG
GTCGGTGGTTCTCGCCTCTATCCCAAGGTGCACGACGTACGCGGGTTGTG
GTTCTTTAGTGTGGCAGCTGTTGTCGCGCTGACACTTTCCCTCAGAAACT
TCAAACAAGAGTGTAATATTAGTCGAGAGCTCGCCGCACTGTCTTGCGGA
TGATGGTGAATGTAGGAACTAAGTTAACCCAGAACGGCAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig208:15864..19253- >mRNA_L-elsbetiae_contig208.6282.1 ID=mRNA_L-elsbetiae_contig208.6282.1|Name=mRNA_L-elsbetiae_contig208.6282.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig208:15864..19253- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCCTCCGATGGACGCCGCAGATGATACTGGACAACACGCCCCGAA
GGTCGAAGTCAAGAGCGCAGAGGAGAGAGATCGTTGTGGTATACAAAATG
GACTAAAGGCAAATGCCAGGCTGATCAGACGAGTGGAAAACGCTCTCGAG
ATGTTTCCTCCGATGGACGCCGCAGATGATACTGGACAACACGCCCCGAA
GGTCGAAGTCAAGAGCGCAGAGGAGAGAGATCGTTGTGGTATACAAAATG
GACTAAAGGCAAATGCCAGGCTGATCAGACGAGTGGAAAACGCTCTCGAG
GGTGGAACCCCTTATCTGGGAACAAGCGCTTCGGCAATTTTATTCGGGGA
GCTATCGTCGCTGCGGCGAGAACAGGCTCTCCTTCTGGAGAAAGATGTGC
GCCTGCAGGAGCGGGCGAACCTGTTGCTGTCTCGGGCCGGGGACGGCAAC
GAAGACGCTAGCGCGTCCTCAGATGTGGAGAGCTACAAAGCTACATACAT
ACGTGCATACGTTGCGATGGCAAATGTGATTTTAGCACCGTACTGCCACC
ACAGACACTGCTGTGGTCTATCCACACAGTCAGTCAGTCGACCACCTTTC
CTCACAAACGGTGTCTGCCCCCTCGTGCGTGTTACATACATCTAGGGTGG
AACCCCTTATCTGGGAACAAGCGCTTCGGCAATTTTATTCGGGGAGCTAT
CGTCGCTGCGGCGAGAACAGGCTCTCCTTCTGGAGAAAGATGTGCGCCTG
CAGGAGCGGGCGAACCTGTTGCTGTCTCGGGCCGGGGACGGCAACGAAGA
CGCTAGCGCGTCCTCAGATGTGGAGAGCTACAAAGCTACATACATACGTG
CATACGTTGCGATGGCAAATGTGATTTTAGCACCGTACTGCCACCACAGA
CACTGCTGTGGTCTATCCACACAGTCAGTCAGTCGACCACCTTTCCTCAC
AAACGGTGTCTGCCCCCTCGTGCGTGTTACATACATCTAG back to top
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