mRNA_L-elsbetiae_contig20766.6270.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20766.6270.1
Unique NamemRNA_L-elsbetiae_contig20766.6270.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: D7FT73_ECTSI (Similar to spermatogenesis associated factor SPAF n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT73_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 1.180e-54
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 2
Query:    2 VVEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALACK 283
            VVEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALACK
Sbjct:  876 VVEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALACK 969          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: W7TTL3_9STRA (Spermatogenesis-associated protein 5 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTL3_9STRA)

HSP 1 Score: 168 bits (426), Expect = 2.810e-48
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 2
Query:    5 VEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALA 277
            VEWPL  PEAF+RMG++PP+GVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESE+A+Q LFK+ARAAAPT++FFDEVDALA
Sbjct:  228 VEWPLTRPEAFVRMGIAPPKGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESEKALQGLFKKARAAAPTVVFFDEVDALA 318          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: A0A7S3HLZ8_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLZ8_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.680e-47
Identity = 76/94 (80.85%), Postives = 88/94 (93.62%), Query Frame = 2
Query:    2 VVEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALACK 283
            VVEWPL HPE F  +G++PP+GVLLYGPPGCSKTLMA+ALATES MNFLAV+GPELLSKWLGESE+A+QALF+RARAAAP+I+FFDE+DALA K
Sbjct:   89 VVEWPLLHPELFASLGIAPPKGVLLYGPPGCSKTLMAKALATESSMNFLAVRGPELLSKWLGESEKAVQALFRRARAAAPSIVFFDEIDALAGK 182          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: A0A4Z2F6E5_9TELE (Spermatogenesis-associated protein 5 n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2F6E5_9TELE)

HSP 1 Score: 155 bits (391), Expect = 3.780e-47
Identity = 70/91 (76.92%), Postives = 86/91 (94.51%), Query Frame = 2
Query:    5 VEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALA 277
            VEWPLRHPEAF RMG+ PP+GVLLYGPPGCSKT++A+ALA ESG+NFLAVKGPELLSK++GESERA++ +F++ARA AP+I+FFDE+DALA
Sbjct:   12 VEWPLRHPEAFTRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAVKGPELLSKYVGESERAVREVFRKARAVAPSIVFFDEIDALA 102          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: A0A4D9CZ55_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ55_9STRA)

HSP 1 Score: 168 bits (426), Expect = 9.840e-47
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 2
Query:    5 VEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALA 277
            VEWPL  PEAF+RMG++PP+GVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESE+A+Q LFK+ARAAAPT++FFDEVDALA
Sbjct:  561 VEWPLTRPEAFVRMGIAPPKGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESEKALQGLFKKARAAAPTVVFFDEVDALA 651          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: UPI00114581EF (ATPase family protein 2 homolog n=1 Tax=Takifugu rubripes TaxID=31033 RepID=UPI00114581EF)

HSP 1 Score: 154 bits (388), Expect = 3.110e-46
Identity = 69/91 (75.82%), Postives = 86/91 (94.51%), Query Frame = 2
Query:    5 VEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALA 277
            VEWPLRHPEAF RMG+ PP+GVLLYGPPGCSKT++A+ALA ESG+NFLA+KGPELLSK++GESERA++ +F++ARA AP+I+FFDE+DALA
Sbjct:   12 VEWPLRHPEAFTRMGILPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELLSKYVGESERAVREVFRKARAVAPSIVFFDEIDALA 102          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: H3CHZ6_TETNG (AAA domain-containing protein n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3CHZ6_TETNG)

HSP 1 Score: 154 bits (390), Expect = 1.430e-45
Identity = 69/91 (75.82%), Postives = 86/91 (94.51%), Query Frame = 2
Query:    5 VEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALA 277
            VEWPLRHPEAF RMG+ PP+GVLLYGPPGCSKT++A+ALA ESG+NFLA+KGPELLSK++GESERA++ +F++ARA AP+I+FFDE+DALA
Sbjct:   64 VEWPLRHPEAFTRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELLSKYVGESERAVREVFRKARAVAPSIVFFDEIDALA 154          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: A0A060WQJ0_ONCMY (AAA domain-containing protein n=1 Tax=Oncorhynchus mykiss TaxID=8022 RepID=A0A060WQJ0_ONCMY)

HSP 1 Score: 155 bits (393), Expect = 2.070e-45
Identity = 70/91 (76.92%), Postives = 86/91 (94.51%), Query Frame = 2
Query:    5 VEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALA 277
            VEWPLRHPEAF RMG+ PP+GVLLYGPPGCSKT++A+ALA ESG+NFLA+KGPELLSK++GESERA++ LF++ARA AP+I+FFDE+DALA
Sbjct:  114 VEWPLRHPEAFTRMGIQPPKGVLLYGPPGCSKTMIAKALANESGLNFLAIKGPELLSKYVGESERAVRELFRKARAVAPSIVFFDEIDALA 204          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: A0A401PP87_SCYTO (ATPase_AAA_core domain-containing protein (Fragment) n=2 Tax=Scyliorhinus TaxID=7829 RepID=A0A401PP87_SCYTO)

HSP 1 Score: 150 bits (378), Expect = 3.010e-45
Identity = 66/91 (72.53%), Postives = 85/91 (93.41%), Query Frame = 2
Query:    5 VEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALA 277
            VEWP +HPE+F RMG+ PP+G+LLYGPPGCSKT++A+ALA ESG+NFLAVKGPELLSK++GESERA++ +F++ARA AP+I+FFDE+DALA
Sbjct:   12 VEWPQKHPESFTRMGIQPPKGILLYGPPGCSKTMIAKALANESGLNFLAVKGPELLSKYVGESERAVREIFRKARAVAPSILFFDEIDALA 102          
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Match: UPI00077D1AC5 (spermatogenesis-associated protein 5-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077D1AC5)

HSP 1 Score: 155 bits (393), Expect = 3.600e-45
Identity = 71/91 (78.02%), Postives = 86/91 (94.51%), Query Frame = 2
Query:    5 VEWPLRHPEAFLRMGMSPPRGVLLYGPPGCSKTLMARALATESGMNFLAVKGPELLSKWLGESERAMQALFKRARAAAPTIIFFDEVDALA 277
            VEWPLRHPEAF RMG+ PP+GVLLYGPPGCSKTL+A+ALA ESG+NFLAVKGPELLSK++GESERA++ +F++ARA AP+I+FFDE+DALA
Sbjct:   93 VEWPLRHPEAFTRMGIQPPKGVLLYGPPGCSKTLIAKALANESGLNFLAVKGPELLSKYVGESERAVREVFRKARAVAPSIVFFDEIDALA 183          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20766.6270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT73_ECTSI1.180e-54100.00Similar to spermatogenesis associated factor SPAF ... [more]
W7TTL3_9STRA2.810e-4886.81Spermatogenesis-associated protein 5 n=1 Tax=Nanno... [more]
A0A7S3HLZ8_9STRA2.680e-4780.85Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A4Z2F6E5_9TELE3.780e-4776.92Spermatogenesis-associated protein 5 n=1 Tax=Lipar... [more]
A0A4D9CZ55_9STRA9.840e-4786.81Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
UPI00114581EF3.110e-4675.82ATPase family protein 2 homolog n=1 Tax=Takifugu r... [more]
H3CHZ6_TETNG1.430e-4575.82AAA domain-containing protein n=2 Tax=Tetraodon ni... [more]
A0A060WQJ0_ONCMY2.070e-4576.92AAA domain-containing protein n=1 Tax=Oncorhynchus... [more]
A0A401PP87_SCYTO3.010e-4572.53ATPase_AAA_core domain-containing protein (Fragmen... [more]
UPI00077D1AC53.600e-4578.02spermatogenesis-associated protein 5-like n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20766contigL-elsbetiae_contig20766:1267..2015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815853.319627-CDS-L-elsbetiae_contig20766:1268..13951622815853.319627-CDS-L-elsbetiae_contig20766:1268..1395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20766 1269..1395 -
1691683147.0988505-CDS-L-elsbetiae_contig20766:1268..13951691683147.0988505-CDS-L-elsbetiae_contig20766:1268..1395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20766 1269..1395 -
1622815853.3345337-CDS-L-elsbetiae_contig20766:1857..20151622815853.3345337-CDS-L-elsbetiae_contig20766:1857..2015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20766 1858..2015 -
1691683147.107903-CDS-L-elsbetiae_contig20766:1857..20151691683147.107903-CDS-L-elsbetiae_contig20766:1857..2015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20766 1858..2015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20766.6270.1prot_L-elsbetiae_contig20766.6270.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20766 1269..2015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20766.6270.1

>prot_L-elsbetiae_contig20766.6270.1 ID=prot_L-elsbetiae_contig20766.6270.1|Name=mRNA_L-elsbetiae_contig20766.6270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
GRGVAAPAPGGVLEDGYVAASGGSAVRAPRLQQDAHGQGAGDGVGHELPR
RKGAGAAEQVAGRVRACDASSLQARPGRRSDDHLLRRGGRSRVQA
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mRNA from alignment at L-elsbetiae_contig20766:1267..2015-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20766.6270.1 ID=mRNA_L-elsbetiae_contig20766.6270.1|Name=mRNA_L-elsbetiae_contig20766.6270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=749bp|location=Sequence derived from alignment at L-elsbetiae_contig20766:1267..2015- (Laminarionema elsbetiae ELsaHSoW15)
GGTCGTGGAGTGGCCGCTCCGGCACCCGGAGGCGTTCTTGAGGATGGGTA TGTCGCCGCCTCGGGGGGTTCTGCTGTACGGGCCCCCCGGCTGCAGCAAG ACGCTCATGGCCAGGGCGCTGGCGACGGAGTCGGGCATGAACTTCCTCGC CGTAAAGGGTGAGTGAGCCTGCCTCCCCGTCGCCTCAAACACACATCATT AAATCCCCATCTCAGCAGCAGCGAGGAGGAGGAGGAGGAGGAGGAGGAGG GTGGCGTGCTGTGGACCACACCGCCTTGTAGTAAGCGGTGCATGTGCATC ATCATCACGCGTTTTTCCCGCTTTCAGTGGCACGCGGCAAGCGTCACAAC AGTGTACATCTGAGGTACATAGCCGGCCGGCTATGCAGCTCAGCGGTGAA TTCCTCGTTGGCGACGATCGCCCCGCCCCCGCCCCGCCTTTTTTCTGCTT CATCACGCGGAGAACGGACAGCCGCCGCCGCCGCCGCCGCTACGCTCCAT CCTCCTCGCGTCCCGTCCGCCGCGTTTGAACGAACTCCGTCGTGCGTGTT GGTTGTCGCCTGCGGTCTGGATAAACCTCTCAATTCGCACGCTATGTAAA TACATAAAAAAAATATTTAGGGCCGGAGCTGCTGAGCAAGTGGCTGGGCG AGTCCGAGCGTGCGATGCAAGCTCTCTTCAAGCGCGCCCGGGCCGCCGCT CCGACGATCATCTTCTTCGACGAGGTGGACGCTCTCGCGTGCAAGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20766:1267..2015-

>mRNA_L-elsbetiae_contig20766.6270.1 ID=mRNA_L-elsbetiae_contig20766.6270.1|Name=mRNA_L-elsbetiae_contig20766.6270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig20766:1267..2015- (Laminarionema elsbetiae ELsaHSoW15)
GGTCGTGGAGTGGCCGCTCCGGCACCCGGAGGCGTTCTTGAGGATGGGTA
TGTCGCCGCCTCGGGGGGTTCTGCTGTACGGGCCCCCCGGCTGCAGCAAG
ACGCTCATGGCCAGGGCGCTGGCGACGGAGTCGGGCATGAACTTCCTCGC
CGTAAAGGGGTCGTGGAGTGGCCGCTCCGGCACCCGGAGGCGTTCTTGAG
GATGGGTATGTCGCCGCCTCGGGGGGTTCTGCTGTACGGGCCCCCCGGCT
GCAGCAAGACGCTCATGGCCAGGGCGCTGGCGACGGAGTCGGGCATGAAC
TTCCTCGCCGTAAAGGGGCCGGAGCTGCTGAGCAAGTGGCTGGGCGAGTC
CGAGCGTGCGATGCAAGCTCTCTTCAAGCGCGCCCGGGCCGCCGCTCCGA
CGATCATCTTCTTCGACGAGGTGGACGCTCTCGCGTGCAAGCGGGCCGGA
GCTGCTGAGCAAGTGGCTGGGCGAGTCCGAGCGTGCGATGCAAGCTCTCT
TCAAGCGCGCCCGGGCCGCCGCTCCGACGATCATCTTCTTCGACGAGGTG
GACGCTCTCGCGTGCAAGCG
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