mRNA_L-elsbetiae_contig20732.6253.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig20732.6253.1 vs. uniprot
Match: A0A6H5KXK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXK5_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 3.100e-11 Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 2 Query: 350 FSHQSSGKLLVAPRERAVARGNRDLAQKLVGAGAEIGDALHAAIRRGHGKIANDLLESGASFATKDAEGSTP 565 + Q +LL A E A A+GN+DLAQ+LV AGAEIGDALH A+ GH +I +DLLES AS A D +G TP Sbjct: 9 LTSQQLAELLRALLEHAAAKGNKDLAQRLVRAGAEIGDALHRAVDGGHREIVSDLLESEASLAATDMDGRTP 80
BLAST of mRNA_L-elsbetiae_contig20732.6253.1 vs. uniprot
Match: D8LL12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL12_ECTSI) HSP 1 Score: 65.9 bits (159), Expect = 2.910e-8 Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 2 Query: 371 KLLVAPRERAVARGNRDLAQKLVGAGAEIGDALHAAIRRGHGKIANDLLESGASFATKDAEGSTP 565 ++L P E A A+GN L QKL+ AGA++G ALHAA+R GH ++ +LLE GA + KD GSTP Sbjct: 48 EMLQFPLECAAAQGNVALTQKLLRAGADMGSALHAAVRYGHAEVVTNLLEHGACVSIKDTRGSTP 112
BLAST of mRNA_L-elsbetiae_contig20732.6253.1 vs. uniprot
Match: D8LDP2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP2_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 5.240e-7 Identity = 44/121 (36.36%), Postives = 61/121 (50.41%), Query Frame = 1 Query: 52 MASNSGREALRGAEVQTLFLFFEVLTPEQWAELLKAPLERAAAEGNRDLALRLMRAGAEIGDGVYEAVQAAPQIDAMANRNRREALR------GAEWLIIDIMFEVLTSEQREVTGGSTRA 396 MA+ R AL+G E + L E T QW+E L+APLE A AEG++DLAL L++AGA G G +E + A A E + G E + + + T+ R + GG T A Sbjct: 1 MAAKEDRTALKGLEKRLFKLVSEKATSAQWSEWLRAPLEHAVAEGDKDLALTLLKAGANGGSG-WEGCNDRTLLQAAAEGGNEEVVSTLLGKGGLEEIDVASGDQDRTALHRALIGGHTGA 120
BLAST of mRNA_L-elsbetiae_contig20732.6253.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 5.750e-7 Identity = 34/58 (58.62%), Postives = 39/58 (67.24%), Query Frame = 2 Query: 392 ERAVARGNRDLAQKLVGAGAEIGDALHAAIRRGHGKIANDLLESGASFATKDAEGSTP 565 E A RG+ L +KLV AGAEIG A+HAA+R GH I LLESGAS + D EG TP Sbjct: 39 EHAAGRGHEHLTRKLVEAGAEIGTAVHAAVRGGHCDITEFLLESGASASASDEEGLTP 96
BLAST of mRNA_L-elsbetiae_contig20732.6253.1 vs. uniprot
Match: D8LKW6_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW6_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 1.710e-5 Identity = 43/121 (35.54%), Postives = 56/121 (46.28%), Query Frame = 1 Query: 52 MASNSGREALRGAEVQTLFLFFEVLTPEQWAELLKAPLERAAAEGNRDLALRLMRAGAEIGDGVYEAVQAAPQIDAMANRNRREALR------GAEWLIIDIMFEVLTSEQREVTGGSTRA 396 MA+ R AL G E L E QW+E L+APLE A AEG+ DLAL L++AGA+ G +E + A A E + G E L + T+ R + GG T A Sbjct: 1 MAAEEDRTALNGLEKMLFKLVSEKAASAQWSEWLRAPLEHAVAEGDNDLALALLKAGAD-GSAGWEGCGDRTLLQAAAEGGNEEVVLTLLDNGGVEELDVVSGDNERTALHRALAGGHTEA 120 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20732.6253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig20732.6253.1 >prot_L-elsbetiae_contig20732.6253.1 ID=prot_L-elsbetiae_contig20732.6253.1|Name=mRNA_L-elsbetiae_contig20732.6253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp MASNSGREALRGAEVQTLFLFFEVLTPEQWAELLKAPLERAAAEGNRDLAback to top mRNA from alignment at L-elsbetiae_contig20732:1290..2405+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig20732.6253.1 ID=mRNA_L-elsbetiae_contig20732.6253.1|Name=mRNA_L-elsbetiae_contig20732.6253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig20732:1290..2405+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig20732:1290..2405+ >mRNA_L-elsbetiae_contig20732.6253.1 ID=mRNA_L-elsbetiae_contig20732.6253.1|Name=mRNA_L-elsbetiae_contig20732.6253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig20732:1290..2405+ (Laminarionema elsbetiae ELsaHSoW15)back to top |