mRNA_L-elsbetiae_contig20537.6191.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20537.6191.1
Unique NamemRNA_L-elsbetiae_contig20537.6191.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20537.6191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20537contigL-elsbetiae_contig20537:111..1485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionvon Willebrand factor, type A
Ec32 orthologEc-10_006000.1
Exons2
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.8869548-CDS-L-elsbetiae_contig20537:110..4731622815846.8869548-CDS-L-elsbetiae_contig20537:110..473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20537 111..473 +
1691683142.7540705-CDS-L-elsbetiae_contig20537:110..4731691683142.7540705-CDS-L-elsbetiae_contig20537:110..473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20537 111..473 +
1622815846.8983686-CDS-L-elsbetiae_contig20537:1368..14851622815846.8983686-CDS-L-elsbetiae_contig20537:1368..1485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20537 1369..1485 +
1691683142.76283-CDS-L-elsbetiae_contig20537:1368..14851691683142.76283-CDS-L-elsbetiae_contig20537:1368..1485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20537 1369..1485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20537.6191.1prot_L-elsbetiae_contig20537.6191.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20537 111..1485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20537.6191.1

>prot_L-elsbetiae_contig20537.6191.1 ID=prot_L-elsbetiae_contig20537.6191.1|Name=mRNA_L-elsbetiae_contig20537.6191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=160bp
GPLERSCASTVDAADETLRTQEESARPCPIRCARNRNQAPFAYEVFHVCS
LQRRISTTGRQVLQFLCFRLTCAMLCCSHVPGCRSGLCPRPIVGQGEWED
LPNITTVGYADQEEKITYTFTVTNKGNVDLTTIGIWDPTVEHDCGEVAEL
RVGREYTCSG
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mRNA from alignment at L-elsbetiae_contig20537:111..1485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20537.6191.1 ID=mRNA_L-elsbetiae_contig20537.6191.1|Name=mRNA_L-elsbetiae_contig20537.6191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1375bp|location=Sequence derived from alignment at L-elsbetiae_contig20537:111..1485+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCCTTAGAGCGTTCATGCGCCAGCACGGTCGACGCTGCAGACGAGAC
TTTGCGCACGCAGGAAGAATCAGCCCGTCCCTGCCCGATACGATGCGCTA
GGAATAGGAATCAGGCTCCCTTTGCTTACGAGGTTTTCCACGTTTGCTCT
TTACAGCGGAGAATTTCCACCACAGGGCGCCAAGTGTTGCAGTTTCTGTG
CTTTCGTCTAACCTGCGCAATGTTGTGCTGCTCTCATGTGCCGGGGTGTC
GGTCTGGGTTGTGCCCCCGACCTATAGTTGGCCAGGGCGAGTGGGAAGAC
CTGCCCAACATCACCACGGTGGGGTACGCGGACCAGGAGGAGAAGATCAC
CTACACGTTCACGGTAAGGAGCAATCTGCGGTGGAGGGCGTTGTGGATGT
CATCTACCTACTAGGGTATGATTGACTGGATCTTTTAGGCCACCGTACGA
TACGGTGTTAGGTTCAGTGGTGAGATATGGGGCATCCTGGTATTCCATAT
GTTTATATTTCGTCACGAGGGGAACATGTAGGATGTACAAGTACCTAGTA
ACCTGGTGTTTGTGGAGCAGATCTGAAGCGTAGTACTGGACACATAGTGA
CATGTACACATCAGGGAGTACTTGGGGAAGATACGGGAAGGATACTGTAT
AGACTGCGTGTTAAGCGGAGGAACGGACAATAACTATGTTCGGGTGTGCC
ACCGCGTGGTATCTAGCAGCAGGTGGCCGAAAGTCGCCAATGGTAGAAAA
GCAATGTCACCACGTACCATGCCAGAGCCATCGAGCGGAACAAAAGAAGA
GACTAAACGCGTTCCAAGTTACACGTAACCCCATCAAGTGTACGGCAGTC
GCCGGCCCCCGGGCTAGCTTGGGGCTAGAGGCTCCGACGATGGCATGGGC
TATGCTCGTAGATACTTATAGCTAGATAGGCTCTGGGCACCCAGCAGCGA
CAGTTGTCGTGCATGTACGACAACGCCATGGCCGGTGACCTGTCCTCAAG
TTTCGGAACAGTCCCACCTCGGGAAACCTGTATCAACCTGGTACTGGCTT
GTTCGTATAGAGGTTGCCCAGAGTAGAGGTCCTGGCGGAGCTGTGCGGCG
ACATACGATCTGTTCATGGTATAGGAGACACATAGCCCATGGTCGTTTGG
TTCATTGGTTCTCAATCCTCACCCAACCACTACACATTCCCACCTTACCC
GAGCGACGACTCATATAACTTCTGTTCATGCGGCGCGCAACCCCTACTGT
CATGGCAGGTAACCAACAAGGGAAACGTTGATCTCACGACGATCGGAATA
TGGGACCCGACGGTAGAACACGATTGTGGCGAGGTTGCCGAGCTTCGCGT
CGGAAGGGAGTACACGTGCTCGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20537:111..1485+

>mRNA_L-elsbetiae_contig20537.6191.1 ID=mRNA_L-elsbetiae_contig20537.6191.1|Name=mRNA_L-elsbetiae_contig20537.6191.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=960bp|location=Sequence derived from alignment at L-elsbetiae_contig20537:111..1485+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCCTTAGAGCGTTCATGCGCCAGCACGGTCGACGCTGCAGACGAGAC
TTTGCGCACGCAGGAAGAATCAGCCCGTCCCTGCCCGATACGATGCGCTA
GGAATAGGAATCAGGCTCCCTTTGCTTACGAGGTTTTCCACGTTTGCTCT
TTACAGCGGAGAATTTCCACCACAGGGCGCCAAGTGTTGCAGTTTCTGTG
CTTTCGTCTAACCTGCGCAATGTTGTGCTGCTCTCATGTGCCGGGGTGTC
GGTCTGGGTTGTGCCCCCGACCTATAGTTGGCCAGGGCGAGTGGGAAGAC
CTGCCCAACATCACCACGGTGGGGTACGCGGACCAGGAGGAGAAGATCAC
CTACACGTTCACGGGCCCCTTAGAGCGTTCATGCGCCAGCACGGTCGACG
CTGCAGACGAGACTTTGCGCACGCAGGAAGAATCAGCCCGTCCCTGCCCG
ATACGATGCGCTAGGAATAGGAATCAGGCTCCCTTTGCTTACGAGGTTTT
CCACGTTTGCTCTTTACAGCGGAGAATTTCCACCACAGGGCGCCAAGTGT
TGCAGTTTCTGTGCTTTCGTCTAACCTGCGCAATGTTGTGCTGCTCTCAT
GTGCCGGGGTGTCGGTCTGGGTTGTGCCCCCGACCTATAGTTGGCCAGGG
CGAGTGGGAAGACCTGCCCAACATCACCACGGTGGGGTACGCGGACCAGG
AGGAGAAGATCACCTACACGTTCACGGTAACCAACAAGGGAAACGTTGAT
CTCACGACGATCGGAATATGGGACCCGACGGTAGAACACGATTGTGGCGA
GGTTGCCGAGCTTCGCGTCGGAAGGGAGTACACGTGCTCGGGGGTAACCA
ACAAGGGAAACGTTGATCTCACGACGATCGGAATATGGGACCCGACGGTA
GAACACGATTGTGGCGAGGTTGCCGAGCTTCGCGTCGGAAGGGAGTACAC
GTGCTCGGGG
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