mRNA_L-elsbetiae_contig20524.6188.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20524.6188.1
Unique NamemRNA_L-elsbetiae_contig20524.6188.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.420e-29
Identity = 54/77 (70.13%), Postives = 67/77 (87.01%), Query Frame = 1
Query:    4 GQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIRK 234
            G+++FP+LK+VAQQTFG+Q +AAPVERDFSG G+F+ PNRSRV+ YW EMVMF+ AN+  IPKY +IPSID KDIRK
Sbjct:  740 GRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRK 816          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.360e-29
Identity = 56/77 (72.73%), Postives = 66/77 (85.71%), Query Frame = 1
Query:    4 GQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIRK 234
            G++AFPSLK+VAQQTFGNQ +AAPVERDFSG G+FM PNRSRVD YW EMVMF+KAN++   +  +IP IDPKDIRK
Sbjct:  398 GKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNS-SRRINIPQIDPKDIRK 473          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.010e-25
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 GQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIRK 234
            G+  FPSLKYVAQQTFG+Q +AA +ERDFS  G+F   NRSR + YW EMVM +K NY  IP Y DIPSID KDIRK
Sbjct:  500 GKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRK 576          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.050e-23
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    4 GQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDI 228
            G+  FP L  VAQQ FGNQ  AA VERDFSG    +  NRSR+DTYW EMVMF+ AN+ HIP + DIP I  KDI
Sbjct:   38 GRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDI 112          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 5.920e-23
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    4 GQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIR 231
            G+  FP L  VAQQ FGNQ A + VERDFSG G+ + PNRSR+DTYW E+VMF+ AN++HIP    IP +  K+IR
Sbjct:  200 GKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIR 275          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.120e-21
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    4 GQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIRK 234
            G++AFP+L YVAQQ FG+Q  AA +ERDFS  G+    NR+R+D YW EMV+F+KAN+  IP Y DIP++D K IR+
Sbjct:  395 GRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRE 471          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.640e-21
Identity = 43/72 (59.72%), Postives = 47/72 (65.28%), Query Frame = 1
Query:   16 FPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIR 231
            FP L  VAQQ  GNQ  AA VERDFS     +  NRSR+DTYW EMVMF+  NY  IP + DIP I  KDIR
Sbjct:    2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 73          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.080e-20
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 GQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIR 231
            G+  FP L  VAQQ  GNQ  AA VERDFS     +  NRSR+DTYW EMVMF+  NY  IP + DIP I  KDIR
Sbjct:  113 GRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 188          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.390e-19
Identity = 44/76 (57.89%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 GQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIR 231
            G+  FP L  VAQQ  GNQ  AA VERDFS     +  NRSR+DTYW EMVMF+  NY  IP + DIP I  KDIR
Sbjct:  511 GRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIR 586          
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Match: A0A6H5KBM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM2_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.180e-16
Identity = 39/72 (54.17%), Postives = 45/72 (62.50%), Query Frame = 1
Query:   16 FPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAEMVMFIKANYSHIPKYADIPSIDPKDIR 231
            F +L   A +  GNQ  AA VERDFS     +  NRSR+DTYW EMVMF+  NY  IP + DIP I  KDIR
Sbjct:  218 FQALYMTAGEVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKCIPAFKDIPMIAAKDIR 289          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20524.6188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE1.420e-2970.13Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5K8W6_9PHAE3.360e-2972.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE2.010e-2566.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSA7_9PHAE2.050e-2361.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZQ5_9PHAE5.920e-2357.89Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KFQ8_9PHAE1.120e-2157.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KP16_9PHAE2.640e-2159.72Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVT2_9PHAE1.080e-2057.89Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ec... [more]
A0A6H5KZ46_9PHAE1.390e-1957.89Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KBM2_9PHAE2.180e-1654.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20524contigL-elsbetiae_contig20524:1697..1930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.627265-CDS-L-elsbetiae_contig20524:1696..19301622815846.627265-CDS-L-elsbetiae_contig20524:1696..1930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20524 1697..1930 -
1691683142.5915272-CDS-L-elsbetiae_contig20524:1696..19301691683142.5915272-CDS-L-elsbetiae_contig20524:1696..1930Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20524 1697..1930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20524.6188.1prot_L-elsbetiae_contig20524.6188.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20524 1697..1930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20524.6188.1

>prot_L-elsbetiae_contig20524.6188.1 ID=prot_L-elsbetiae_contig20524.6188.1|Name=mRNA_L-elsbetiae_contig20524.6188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
KGQYAFPSLKYVAQQTFGNQIAAAPVERDFSGFGVFMRPNRSRVDTYWAE
MVMFIKANYSHIPKYADIPSIDPKDIRK
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mRNA from alignment at L-elsbetiae_contig20524:1697..1930-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20524.6188.1 ID=mRNA_L-elsbetiae_contig20524.6188.1|Name=mRNA_L-elsbetiae_contig20524.6188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig20524:1697..1930- (Laminarionema elsbetiae ELsaHSoW15)
AAAGGCCAGTATGCCTTCCCCTCTCTGAAGTATGTCGCGCAGCAGACCTT CGGAAACCAAATCGCTGCCGCTCCAGTCGAGCGAGACTTCAGCGGTTTCG GGGTTTTCATGAGGCCGAACCGCAGCCGTGTAGACACGTACTGGGCGGAG ATGGTGATGTTCATCAAGGCCAACTACAGCCACATCCCCAAGTACGCGGA CATCCCCAGCATCGACCCGAAGGACATCAGGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20524:1697..1930-

>mRNA_L-elsbetiae_contig20524.6188.1 ID=mRNA_L-elsbetiae_contig20524.6188.1|Name=mRNA_L-elsbetiae_contig20524.6188.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig20524:1697..1930- (Laminarionema elsbetiae ELsaHSoW15)
AAAGGCCAGTATGCCTTCCCCTCTCTGAAGTATGTCGCGCAGCAGACCTT
CGGAAACCAAATCGCTGCCGCTCCAGTCGAGCGAGACTTCAGCGGTTTCG
GGGTTTTCATGAGGCCGAACCGCAGCCGTGTAGACACGTACTGGGCGGAG
ATGGTGATGTTCATCAAGGCCAACTACAGCCACATCCCCAAGTACGCGGA
CATCCCCAGCATCGACCCGAAGGACATCAGGAAGAAAGGCCAGTATGCCT
TCCCCTCTCTGAAGTATGTCGCGCAGCAGACCTTCGGAAACCAAATCGCT
GCCGCTCCAGTCGAGCGAGACTTCAGCGGTTTCGGGGTTTTCATGAGGCC
GAACCGCAGCCGTGTAGACACGTACTGGGCGGAGATGGTGATGTTCATCA
AGGCCAACTACAGCCACATCCCCAAGTACGCGGACATCCCCAGCATCGAC
CCGAAGGACATCAGGAAG
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