mRNA_L-elsbetiae_contig20509.6182.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20509.6182.1
Unique NamemRNA_L-elsbetiae_contig20509.6182.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: D8LN43_ECTSI (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN43_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.650e-18
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVHAS 144
            GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQ  FPS ALVRVHAS
Sbjct:  784 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQGAFPSQALVRVHAS 831
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: A0A6H5JSW4_9PHAE (DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSW4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 9.490e-17
Identity = 43/48 (89.58%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVHAS 144
            GTPLAVAG+EDSEIH TIAELMILANSAVAEKIQ  FPS ALVRVHAS
Sbjct:  378 GTPLAVAGQEDSEIHDTIAELMILANSAVAEKIQGAFPSQALVRVHAS 425
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: B7G7C1_PHATC (DIS3-like exonuclease 1 n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G7C1_PHATC)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVHAS 144
            G P  V  KED+E+HHTIAELMILAN+ VA +I   FP +AL+R+H S
Sbjct:  845 GIPTEVIAKEDTEVHHTIAELMILANTTVATQIYSFFPDSALLRIHRS 892
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: A0A7S3DYM8_9STRA (DIS3-like exonuclease 1 n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DYM8_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.990e-9
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVH 138
            G P+AV  K+D EIHHTIAELMI AN++VA KI   FP +AL+R+H
Sbjct:   36 GKPVAVKPKQDLEIHHTIAELMIWANTSVATKIYERFPGSALLRIH 81
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: A0A7S4MYR8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MYR8_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.980e-7
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVH 138
            G P  V  K + EIH TIAELMILAN  VA++I   FPS AL+RVH
Sbjct:  521 GNPSRVRPKTEREIHRTIAELMILANRYVAQRIHDAFPSCALLRVH 566
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: A0A7S4R116_9STRA (DIS3-like exonuclease 1 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R116_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.980e-7
Identity = 27/46 (58.70%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVH 138
            G P  V  K + EIHHTIAELMI+AN  VA KI   FPS++L+R H
Sbjct:  374 GLPTKVVAKTEMEIHHTIAELMIMANGHVASKIHGHFPSSSLLRNH 419
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: A0A7S1FU83_9STRA (DIS3-like exonuclease 1 (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FU83_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 5.690e-7
Identity = 26/46 (56.52%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVH 138
            G P AV  K++ EIH T+AELMILANSAVA  +   +P  AL+R H
Sbjct:   64 GMPRAVQPKKEKEIHRTVAELMILANSAVAAFVHARYPLQALLRTH 109
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: A0A1E7FX94_9STRA (DIS3-like exonuclease 1 (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX94_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.040e-6
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    7 PLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVHAS 144
            P+ V  K+  EIH T+AELMI+ANS VA  I  TFP++AL+R+H S
Sbjct:  483 PVKVTPKKQLEIHQTVAELMIMANSWVARTIFETFPNSALLRIHQS 528
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: A0A8K1FML7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FML7_PYTOL)

HSP 1 Score: 51.6 bits (122), Expect = 2.680e-6
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVH 138
            G  + +  KE  EIH TIAELMILANS VA+KI   FPS AL+R H
Sbjct:  779 GNGVEIVMKESMEIHSTIAELMILANSYVAKKIVTAFPSNALLRRH 824
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BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Match: A0A1Y1I1Y7_KLENI (DIS3-like exonuclease 1 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1Y7_KLENI)

HSP 1 Score: 51.2 bits (121), Expect = 3.660e-6
Identity = 25/47 (53.19%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVHA 141
            G P+ V  K++ +++  +AELMI ANSAVAE+I  TFPS +L+R HA
Sbjct:  767 GAPMKVITKQELQVNWVVAELMIAANSAVAERIFSTFPSTSLLRHHA 813
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20509.6182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN43_ECTSI1.650e-1893.75DIS3-like exonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSW4_9PHAE9.490e-1789.58DIS3-like exonuclease 1 n=1 Tax=Ectocarpus sp. CCA... [more]
B7G7C1_PHATC1.460e-960.42DIS3-like exonuclease 1 n=4 Tax=Phaeodactylum tric... [more]
A0A7S3DYM8_9STRA1.990e-963.04DIS3-like exonuclease 1 n=1 Tax=Amphiprora paludos... [more]
A0A7S4MYR8_9STRA2.980e-760.87Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A7S4R116_9STRA2.980e-758.70DIS3-like exonuclease 1 n=2 Tax=Ditylum brightwell... [more]
A0A7S1FU83_9STRA5.690e-756.52DIS3-like exonuclease 1 (Fragment) n=1 Tax=Corethr... [more]
A0A1E7FX94_9STRA1.040e-656.52DIS3-like exonuclease 1 (Fragment) n=1 Tax=Fragila... [more]
A0A8K1FML7_PYTOL2.680e-660.87Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1Y1I1Y7_KLENI3.660e-653.19DIS3-like exonuclease 1 n=1 Tax=Klebsormidium nite... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20509contigL-elsbetiae_contig20509:1770..1913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.7e-15
Seed eggNOG ortholog2880.D8LN43
Preferred nameDIS3L
KEGG koko:K12585,ko:K18681
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000175,GO:0000177,GO:0000178,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009987,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016072,GO:0016075,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019439,GO:0019899,GO:0022613,GO:0032991,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.2173111-CDS-L-elsbetiae_contig20509:1769..19131622815846.2173111-CDS-L-elsbetiae_contig20509:1769..1913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20509 1770..1913 +
1691683142.3232803-CDS-L-elsbetiae_contig20509:1769..19131691683142.3232803-CDS-L-elsbetiae_contig20509:1769..1913Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20509 1770..1913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20509.6182.1prot_L-elsbetiae_contig20509.6182.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20509 1770..1913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20509.6182.1

>prot_L-elsbetiae_contig20509.6182.1 ID=prot_L-elsbetiae_contig20509.6182.1|Name=mRNA_L-elsbetiae_contig20509.6182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=48bp
GTPLAVAGKEDSEIHHTIAELMILANSAVAEKIQRTFPSAALVRVHAS
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mRNA from alignment at L-elsbetiae_contig20509:1770..1913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20509.6182.1 ID=mRNA_L-elsbetiae_contig20509.6182.1|Name=mRNA_L-elsbetiae_contig20509.6182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=144bp|location=Sequence derived from alignment at L-elsbetiae_contig20509:1770..1913+ (Laminarionema elsbetiae ELsaHSoW15)
GGCACGCCTCTGGCCGTGGCGGGAAAGGAAGACTCGGAGATCCACCACAC
CATCGCCGAGCTCATGATCCTGGCCAACAGCGCCGTGGCCGAGAAGATTC
AGAGAACTTTCCCGTCGGCGGCCCTGGTCCGCGTCCACGCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20509:1770..1913+

>mRNA_L-elsbetiae_contig20509.6182.1 ID=mRNA_L-elsbetiae_contig20509.6182.1|Name=mRNA_L-elsbetiae_contig20509.6182.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=288bp|location=Sequence derived from alignment at L-elsbetiae_contig20509:1770..1913+ (Laminarionema elsbetiae ELsaHSoW15)
GGCACGCCTCTGGCCGTGGCGGGAAAGGAAGACTCGGAGATCCACCACAC
CATCGCCGAGCTCATGATCCTGGCCAACAGCGCCGTGGCCGAGAAGATTC
AGAGAACTTTCCCGTCGGCGGCCCTGGTCCGCGTCCACGCCTCCGGCACG
CCTCTGGCCGTGGCGGGAAAGGAAGACTCGGAGATCCACCACACCATCGC
CGAGCTCATGATCCTGGCCAACAGCGCCGTGGCCGAGAAGATTCAGAGAA
CTTTCCCGTCGGCGGCCCTGGTCCGCGTCCACGCCTCC
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