mRNA_L-elsbetiae_contig20504.6180.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20504.6180.1
Unique NamemRNA_L-elsbetiae_contig20504.6180.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: A0A6H5KXN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN2_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 6.890e-25
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   10 IMQVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGESTLCAEPCRGDEDQVCG 198
            + +V S  LTPA CAAYC  VEGA Y GVQ+GRKC+CGDSFG+HG+STLC+EPC GDEDQVCG
Sbjct:  194 VPKVVSSYLTPAACAAYCSSVEGATYIGVQSGRKCFCGDSFGKHGQSTLCSEPCYGDEDQVCG 256
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.170e-24
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:   10 IMQVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGESTLCAEPCRGDEDQVCG 198
            + +V S  LTPA CAAYC  VEGA Y GVQ+GRKC+CGDSFG+HG+STLC+EPC GDEDQVCG
Sbjct:  698 VPKVVSSYLTPAACAAYCSSVEGATYIGVQSGRKCFCGDSFGKHGQSTLCSEPCYGDEDQVCG 760
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: A0A1I8I836_9PLAT (WSC domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8I836_9PLAT)

HSP 1 Score: 55.1 bits (131), Expect = 8.220e-8
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 SDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGE--STLCAEPCRGDEDQVCG 198
            S  +T  VC+ +C  + G  YFGVQ G++C+CG S+G HG+   + C   C+G+ +Q+CG
Sbjct:    3 SPDMTLGVCSNFC-SLFGFPYFGVQVGKQCFCGSSYGLHGQLSDSKCNSQCKGNPEQICG 61
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: A0A1I8GNZ8_9PLAT (WSC domain-containing protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GNZ8_9PLAT)

HSP 1 Score: 55.1 bits (131), Expect = 1.920e-7
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 SDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGE--STLCAEPCRGDEDQVCG 198
            S  +T  VC+ +C  + G  YFGVQ G++C+CG S+G HG+   + C   C+G+ +Q+CG
Sbjct:   65 SPDMTLGVCSNFC-SLFGFPYFGVQVGKQCFCGSSYGLHGQLSDSKCNSQCKGNPEQICG 123
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: A0A1I8HD00_9PLAT (WSC domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8HD00_9PLAT)

HSP 1 Score: 55.1 bits (131), Expect = 3.360e-7
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 SDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGE--STLCAEPCRGDEDQVCG 198
            S  +T  VC+ +C  + G  YFGVQ G++C+CG S+G HG+   + C   C+G+ +Q+CG
Sbjct:  227 SPDMTLGVCSNFC-SLFGFPYFGVQVGKQCFCGSSYGLHGQLSDSKCNSQCKGNPEQICG 285
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: A0A1I8I9T0_9PLAT (WSC domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8I9T0_9PLAT)

HSP 1 Score: 55.1 bits (131), Expect = 3.480e-7
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   25 SDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGE--STLCAEPCRGDEDQVCG 198
            S  +T  VC+ +C  + G  YFGVQ G++C+CG S+G HG+   + C   C+G+ +Q+CG
Sbjct:  227 SPDMTLGVCSNFC-SLFGFPYFGVQVGKQCFCGSSYGLHGQLSDSKCNSQCKGNPEQICG 285
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: K1Q0M9_CRAGI (Plasminogen n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q0M9_CRAGI)

HSP 1 Score: 54.3 bits (129), Expect = 6.490e-7
Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   16 QVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGESTLCAEPCRGDEDQVCG 198
            +  S ++T   C   CL  +  KY+G++AG +C+CG+  G+    + C  PC GD++QVCG
Sbjct:  190 KTSSRSMTVETCRKTCLKAD-TKYYGLEAGDECFCGNKLGKKKSDSECKTPCTGDKEQVCG 249
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: A0A4P7N7Z3_MAGOR (Uncharacterized protein n=7 Tax=Pyricularia TaxID=48558 RepID=A0A4P7N7Z3_MAGOR)

HSP 1 Score: 54.3 bits (129), Expect = 6.490e-7
Identity = 29/60 (48.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:   28 DALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGR---HGESTLCAEPCRGDEDQVCG 198
            DA+T  VCA+ C       +FGV+ GR+CYCGDSFG        T C+ PC GD  Q+CG
Sbjct:  735 DAMTLEVCASACTAFT---FFGVEYGRECYCGDSFGEGSVEAAETDCSFPCPGDGAQLCG 791
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: UPI00148AD966 (uncharacterized protein LOC105345065 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148AD966)

HSP 1 Score: 54.3 bits (129), Expect = 6.530e-7
Identity = 23/61 (37.70%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   16 QVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGESTLCAEPCRGDEDQVCG 198
            +  S ++T   C   CL  +  KY+G++AG +C+CG+  G+    + C  PC GD++QVCG
Sbjct:  593 KTSSRSMTVETCRKTCLKAD-TKYYGLEAGDECFCGNKLGKKKSDSECKTPCTGDKEQVCG 652
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BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Match: UPI00160102B7 (uncharacterized protein LOC118427567 isoform X1 n=3 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI00160102B7)

HSP 1 Score: 53.5 bits (127), Expect = 1.220e-6
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:   28 DALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGES--TLCAEPCRGDEDQVCG 198
            + LTP  C  +C   EG +Y G+Q G++C+CGDSFG+ G +  + C+ PC G     CG
Sbjct:  360 ENLTPTSCLGHCT-AEGYRYAGLQYGKECFCGDSFGQFGAAPESECSTPCTGSSADTCG 417
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20504.6180.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXN2_9PHAE6.890e-2573.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG92_ECTSI2.170e-2473.02F5/8 type C domain protein n=1 Tax=Ectocarpus sili... [more]
A0A1I8I836_9PLAT8.220e-841.67WSC domain-containing protein n=1 Tax=Macrostomum ... [more]
A0A1I8GNZ8_9PLAT1.920e-741.67WSC domain-containing protein n=2 Tax=Macrostomum ... [more]
A0A1I8HD00_9PLAT3.360e-741.67WSC domain-containing protein n=1 Tax=Macrostomum ... [more]
A0A1I8I9T0_9PLAT3.480e-741.67WSC domain-containing protein n=1 Tax=Macrostomum ... [more]
K1Q0M9_CRAGI6.490e-737.70Plasminogen n=1 Tax=Crassostrea gigas TaxID=29159 ... [more]
A0A4P7N7Z3_MAGOR6.490e-748.33Uncharacterized protein n=7 Tax=Pyricularia TaxID=... [more]
UPI00148AD9666.530e-737.70uncharacterized protein LOC105345065 n=1 Tax=Crass... [more]
UPI00160102B71.220e-642.37uncharacterized protein LOC118427567 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20504contigL-elsbetiae_contig20504:2216..2413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue3.3e-07
Seed eggNOG ortholog944481.JAFP01000001_gene1117
Preferred nameyjeP
KEGG koko:K02057,ko:K05802,ko:K22051
KEGG TC1.A.23.1.1,1.A.23.1.2,1.A.23.1.3,3.A.1.2
KEGG ModuleM00221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.WSC domain
EggNOG OGs1NG4U@1224,2M6YU@213113,2X6WW@28221,43BII@68525,COG0419@1,COG0419@2,COG3591@1,COG3591@2
COG Functional cat.E
Best tax levelDesulfurellales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02000
Exons1
Model size198
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.1159952-UTR-L-elsbetiae_contig20504:2215..22271622815846.1159952-UTR-L-elsbetiae_contig20504:2215..2227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20504 2216..2227 +
1691683142.2838497-UTR-L-elsbetiae_contig20504:2215..22271691683142.2838497-UTR-L-elsbetiae_contig20504:2215..2227Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig20504 2216..2227 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815846.1270046-CDS-L-elsbetiae_contig20504:2227..24131622815846.1270046-CDS-L-elsbetiae_contig20504:2227..2413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20504 2228..2413 +
1691683142.295508-CDS-L-elsbetiae_contig20504:2227..24131691683142.295508-CDS-L-elsbetiae_contig20504:2227..2413Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20504 2228..2413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20504.6180.1prot_L-elsbetiae_contig20504.6180.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20504 2228..2413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20504.6180.1

>prot_L-elsbetiae_contig20504.6180.1 ID=prot_L-elsbetiae_contig20504.6180.1|Name=mRNA_L-elsbetiae_contig20504.6180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
MQVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGESTLCA
EPCRGDEDQVCG
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mRNA from alignment at L-elsbetiae_contig20504:2216..2413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20504.6180.1 ID=mRNA_L-elsbetiae_contig20504.6180.1|Name=mRNA_L-elsbetiae_contig20504.6180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig20504:2216..2413+ (Laminarionema elsbetiae ELsaHSoW15)
ACAACAACAATAATGCAGGTGAAGTCCGATGCTCTCACGCCGGCGGTGTG
CGCGGCCTACTGCTTGCCGGTCGAGGGGGCCAAGTACTTCGGAGTGCAGG
CCGGCCGCAAGTGCTACTGCGGCGACTCCTTCGGCAGGCACGGGGAGTCG
ACCCTGTGCGCAGAGCCCTGCCGAGGCGACGAGGACCAGGTGTGCGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20504:2216..2413+

>mRNA_L-elsbetiae_contig20504.6180.1 ID=mRNA_L-elsbetiae_contig20504.6180.1|Name=mRNA_L-elsbetiae_contig20504.6180.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig20504:2216..2413+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGTGAAGTCCGATGCTCTCACGCCGGCGGTGTGCGCGGCCTACTG
CTTGCCGGTCGAGGGGGCCAAGTACTTCGGAGTGCAGGCCGGCCGCAAGT
GCTACTGCGGCGACTCCTTCGGCAGGCACGGGGAGTCGACCCTGTGCGCA
GAGCCCTGCCGAGGCGACGAGGACCAGGTGTGCGGGATGCAGGTGAAGTC
CGATGCTCTCACGCCGGCGGTGTGCGCGGCCTACTGCTTGCCGGTCGAGG
GGGCCAAGTACTTCGGAGTGCAGGCCGGCCGCAAGTGCTACTGCGGCGAC
TCCTTCGGCAGGCACGGGGAGTCGACCCTGTGCGCAGAGCCCTGCCGAGG
CGACGAGGACCAGGTGTGCGGG
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