mRNA_L-elsbetiae_contig20478.6169.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig20478.6169.1
Unique NamemRNA_L-elsbetiae_contig20478.6169.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: D8LTU6_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU6_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 4.650e-44
Identity = 81/92 (88.04%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV 276
            LYRQLGG KWVWNAITSSLVFPLPLL VFSVVNTIAI QSSTAA+PFYPV V+VA+FVFI FPMTV+GAI+GR TTSDFQAPCRTTRVPRQV
Sbjct:  425 LYRQLGGGKWVWNAITSSLVFPLPLLGVFSVVNTIAISQSSTAALPFYPVMVIVAMFVFIVFPMTVIGAIIGRNTTSDFQAPCRTTRVPRQV 516
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: A0A8K1CSX4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSX4_PYTOL)

HSP 1 Score: 119 bits (298), Expect = 2.870e-29
Identity = 56/101 (55.45%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV-CLPLYGAP 300
            LYRQLGG++WVWN + S LV P PL+A+FS +NT+AI+  S+AA+PF  + V+VA+F+ +AFP+TV+G I GR TT DF APCRT +V R++  +P+Y +P
Sbjct:  368 LYRQLGGQRWVWNILLSVLVIPGPLVAIFSFLNTVAIWNDSSAALPFGTIMVVVAIFMLVAFPLTVIGGIAGRNTTGDFDAPCRTNKVAREIPSVPVYRSP 468
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: A0A2D4BKE7_PYTIN (Transmembrane 9 superfamily member n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKE7_PYTIN)

HSP 1 Score: 118 bits (295), Expect = 7.060e-29
Identity = 54/102 (52.94%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV-CLPLYGAPR 303
            LYRQLGG++WVWN +   LV P P+LAVFS +NT+AI+  S+AA+PF  + +++A+F  +A P+TV+G I GR T  DF APCRT ++PRQ+  +PLY +P+
Sbjct:  353 LYRQLGGQRWVWNILLCVLVIPGPMLAVFSFLNTVAIWNDSSAALPFGTIMIVLAIFTLVALPLTVIGGIAGRNTAGDFNAPCRTNKIPRQIPAVPLYRSPK 454
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: A0A662Y906_9STRA (Transmembrane 9 superfamily member n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y906_9STRA)

HSP 1 Score: 112 bits (280), Expect = 8.630e-27
Identity = 49/101 (48.51%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV-CLPLYGAP 300
            +YRQLGG++WVWN +   LV P PL+A+FS +N++AI+  S+AA+PF  + +++ALF+ +A P+T++G I GR TT +F+APCRT ++PR++  +P Y +P
Sbjct:  377 MYRQLGGQRWVWNILMCVLVIPGPLIAIFSFLNSLAIWNDSSAALPFGTIMIVLALFITVALPLTIIGGIAGRNTTGEFKAPCRTNKIPREIPAVPSYRSP 477
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: A0A5D6Y291_9STRA (Transmembrane 9 superfamily member n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y291_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.910e-26
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV-CLPLYGAP 300
            LYRQLGG++WVWN + S LV P PLL VFS +N++AI+  S+AA+PF  + +++A+F  +A P+ VVG I GR T  DF APCRT ++PR+V  +P Y  P
Sbjct:  347 LYRQLGGQRWVWNILLSVLVIPGPLLLVFSFLNSVAIWNDSSAALPFGTILIVLAIFALVALPLAVVGGIAGRNTAGDFGAPCRTNKIPREVPAVPWYRRP 447
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: D0MYN6_PHYIT (Transmembrane 9 superfamily member n=17 Tax=Phytophthora TaxID=4783 RepID=D0MYN6_PHYIT)

HSP 1 Score: 110 bits (275), Expect = 3.990e-26
Identity = 48/101 (47.52%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV-CLPLYGAP 300
            LYRQLGG++WVWN +   LV P PL+A+FS +N++AI+  S+AA+PF  + +++ALF+ +A P+T++G + GR +T DF++PCRT ++PR++  +P Y +P
Sbjct:  356 LYRQLGGQRWVWNILMCVLVIPGPLVAIFSFLNSVAIWNDSSAALPFGTIMIVLALFITVALPLTIIGGVAGRNSTGDFKSPCRTNKIPREIPSVPGYRSP 456
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: A0A8J5J6Y3_9STRA (Abhydrolase_3 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J6Y3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 4.680e-26
Identity = 48/101 (47.52%), Postives = 79/101 (78.22%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV-CLPLYGAP 300
            +YRQLGG++WVWN + S LV P PL+A+FS +N++AI+  S+AA+PF  + +++ALF+ +A P+T++G I GR +T +F++PCRT ++PR++  +P Y +P
Sbjct:  356 MYRQLGGQRWVWNILISVLVIPGPLVAIFSFLNSVAIWNDSSAALPFGTIMIVLALFITVALPLTIIGGIAGRNSTGEFKSPCRTNKIPREIPSVPGYRSP 456
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: K3WQB3_GLOUD (Abhydrolase_3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQB3_GLOUD)

HSP 1 Score: 110 bits (275), Expect = 4.680e-26
Identity = 49/101 (48.51%), Postives = 75/101 (74.26%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQVC-LPLYGAP 300
            LYRQLGG++WVWN + S  + P PLL +FS +N++AI+  S+AA+PF  + +++A+F+ +A P+TV+G I GR T  DF APCRT ++PR++  +P Y +P
Sbjct:  349 LYRQLGGQRWVWNILLSVFIIPGPLLVIFSFLNSVAIWNDSSAALPFGTIMIVLAIFMLVALPLTVIGGIAGRNTAGDFNAPCRTNKIPREIPDVPWYRSP 449
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: A0A421EWY3_9STRA (Transmembrane 9 superfamily member n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EWY3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.910e-26
Identity = 47/101 (46.53%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV-CLPLYGAP 300
            LYRQLGG++WVWN +   LV P PL+ +FS +N++AI+  S+AA+PF  + +++ALF+ +A P+T++G + GR +T +F+APCRT ++PR++  +P Y +P
Sbjct:  242 LYRQLGGQRWVWNILICVLVIPGPLVVIFSFLNSVAIWNDSSAALPFGTIMIVLALFITVALPLTIIGGVAGRNSTGEFKAPCRTNKIPREIPAVPGYRSP 342
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BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Match: A0A2P4WVP6_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WVP6_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.170e-25
Identity = 47/101 (46.53%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    1 LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPVAVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQV-CLPLYGAP 300
            +YRQLGG++WVWN +   LV P PL+A+FS +N++AI+  S+AA+PF  + +++ALF+ +A P+T++G I GR +T +F++PCRT ++PR++  +P Y +P
Sbjct:   98 MYRQLGGQRWVWNILMCVLVIPGPLIAIFSFLNSVAIWNDSSAALPFGTIMIVLALFITVALPLTIIGGIAGRNSTGEFKSPCRTNKIPREIPAVPGYRSP 198
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig20478.6169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTU6_ECTSI4.650e-4488.04Transmembrane 9 superfamily member n=1 Tax=Ectocar... [more]
A0A8K1CSX4_PYTOL2.870e-2955.45Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BKE7_PYTIN7.060e-2952.94Transmembrane 9 superfamily member n=1 Tax=Pythium... [more]
A0A662Y906_9STRA8.630e-2748.51Transmembrane 9 superfamily member n=2 Tax=Nothoph... [more]
A0A5D6Y291_9STRA3.910e-2652.48Transmembrane 9 superfamily member n=1 Tax=Pythium... [more]
D0MYN6_PHYIT3.990e-2647.52Transmembrane 9 superfamily member n=17 Tax=Phytop... [more]
A0A8J5J6Y3_9STRA4.680e-2647.52Abhydrolase_3 domain-containing protein n=1 Tax=Ph... [more]
K3WQB3_GLOUD4.680e-2648.51Abhydrolase_3 domain-containing protein n=1 Tax=Gl... [more]
A0A421EWY3_9STRA8.910e-2646.53Transmembrane 9 superfamily member n=3 Tax=Phytoph... [more]
A0A2P4WVP6_9STRA1.170e-2546.53Transmembrane 9 superfamily member (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig20478contigL-elsbetiae_contig20478:390..1300 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.3
Seed ortholog evalue5.9e-38
Seed eggNOG ortholog2880.D8LTU6
Preferred nameTM9SF1
KEGG koko:K17085,ko:K17087
Hectar predicted targeting categorysignal anchor
GOsGO:0002790,GO:0003674,GO:0003824,GO:0004888,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005886,GO:0005887,GO:0005911,GO:0006518,GO:0006807,GO:0006810,GO:0006897,GO:0006909,GO:0006950,GO:0007154,GO:0007155,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009237,GO:0009306,GO:0009505,GO:0009506,GO:0009605,GO:0009607,GO:0009624,GO:0009987,GO:0009991,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0016491,GO:0016614,GO:0016616,GO:0019184,GO:0019290,GO:0019748,GO:0022610,GO:0023052,GO:0030054,GO:0030312,GO:0030587,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031589,GO:0031667,GO:0031982,GO:0031984,GO:0032502,GO:0032940,GO:0033036,GO:0033299,GO:0033707,GO:0034613,GO:0034641,GO:0038023,GO:0042594,GO:0042886,GO:0043043,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044550,GO:0045184,GO:0046903,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0055114,GO:0060089,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072657,GO:0090702,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098805,GO:0099120,GO:1901564,GO:1901566,GO:1901576,GO:1990641
EggNOG free text desc.secretion of lysosomal enzymes
EggNOG OGsKOG1277@2759,KOG1278@1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815844.2225118-CDS-L-elsbetiae_contig20478:389..5061622815844.2225118-CDS-L-elsbetiae_contig20478:389..506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20478 390..506 +
1691683140.871751-CDS-L-elsbetiae_contig20478:389..5061691683140.871751-CDS-L-elsbetiae_contig20478:389..506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20478 390..506 +
1622815844.237223-CDS-L-elsbetiae_contig20478:1114..13001622815844.237223-CDS-L-elsbetiae_contig20478:1114..1300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20478 1115..1300 +
1691683140.8837047-CDS-L-elsbetiae_contig20478:1114..13001691683140.8837047-CDS-L-elsbetiae_contig20478:1114..1300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig20478 1115..1300 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig20478.6169.1prot_L-elsbetiae_contig20478.6169.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig20478 390..1300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig20478.6169.1

>prot_L-elsbetiae_contig20478.6169.1 ID=prot_L-elsbetiae_contig20478.6169.1|Name=mRNA_L-elsbetiae_contig20478.6169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
LYRQLGGRKWVWNAITSSLVFPLPLLAVFSVVNTIAIFQSSTAAVPFYPV
AVMVALFVFIAFPMTVVGAIVGRRTTSDFQAPCRTTRVPRQVCLPLYGAP
R
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mRNA from alignment at L-elsbetiae_contig20478:390..1300+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig20478.6169.1 ID=mRNA_L-elsbetiae_contig20478.6169.1|Name=mRNA_L-elsbetiae_contig20478.6169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=911bp|location=Sequence derived from alignment at L-elsbetiae_contig20478:390..1300+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTACCGCCAGCTCGGAGGCCGCAAATGGGTCTGGAACGCCATCACCTC
GTCCCTGGTGTTTCCTCTGCCTCTGCTCGCCGTCTTCAGCGTCGTCAACA
CCATCGCGATATTCCAGGTATGTTTGTTTTTCTGGCGTCGTCAAACAGCA
TCGCGATATCTCAGCTTATATGTATAGAAGTGTAAATATTTATTTTTTCC
CGCCCGGCATTGGCATATTAGTCGGCCCCCTTCCTCCACTACGACCAGCT
AGACGACCCAACCGGGGTCACATGTGTATCTATCTAGCCTGTGTGACCCC
GGTTGGGTTATCTAGCTAGTCGTAGTAGAGGAAGGGGGCCAGTGAGGGCA
GACGACGAATAAGCCAATAATTTTAGAAAAAAAATGTACTCAATGTACAG
AGAGTGAGCAAGCGTGTAAGGTTTCGCCGATGCTTTCCGCCTCTTCGCGA
GCGGCAAAGAGAGGGGGGAGAGGAAAGTGGCCATGGGCAAAGGAACGCAA
TAAGCTACTCAACGGTAACGACGCAGAATAAAGCCCCCCGAGTGTGTGCG
GCGGTGTTTCCAGCAGGGGTGGTGGTGGGAACGGACGATCCTGTTATAGT
TACGTCTCGAAAGGGGTAATCCTGGATGCGTCGTCGATGCTGTAAAATAC
CAAACGACCCCCCCCCCCTGAACCAAAACCAAACCCGACCCCCGCTGCTC
CCTTCCAACCCAAACGCGCCTTTAGTCGTCGACGGCGGCGGTGCCGTTCT
ACCCGGTGGCGGTGATGGTCGCGTTGTTCGTGTTCATCGCCTTCCCCATG
ACCGTCGTCGGAGCTATCGTGGGCCGTAGGACAACCTCCGACTTCCAGGC
CCCCTGCAGGACCACCCGCGTCCCCCGCCAGGTATGTCTGCCCCTTTACG
GAGCCCCCCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig20478:390..1300+

>mRNA_L-elsbetiae_contig20478.6169.1 ID=mRNA_L-elsbetiae_contig20478.6169.1|Name=mRNA_L-elsbetiae_contig20478.6169.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig20478:390..1300+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTACCGCCAGCTCGGAGGCCGCAAATGGGTCTGGAACGCCATCACCTC
GTCCCTGGTGTTTCCTCTGCCTCTGCTCGCCGTCTTCAGCGTCGTCAACA
CCATCGCGATATTCCAGTTGTACCGCCAGCTCGGAGGCCGCAAATGGGTC
TGGAACGCCATCACCTCGTCCCTGGTGTTTCCTCTGCCTCTGCTCGCCGT
CTTCAGCGTCGTCAACACCATCGCGATATTCCAGTCGTCGACGGCGGCGG
TGCCGTTCTACCCGGTGGCGGTGATGGTCGCGTTGTTCGTGTTCATCGCC
TTCCCCATGACCGTCGTCGGAGCTATCGTGGGCCGTAGGACAACCTCCGA
CTTCCAGGCCCCCTGCAGGACCACCCGCGTCCCCCGCCAGGTATGTCTGC
CCCTTTACGGAGCCCCCCGATCGTCGACGGCGGCGGTGCCGTTCTACCCG
GTGGCGGTGATGGTCGCGTTGTTCGTGTTCATCGCCTTCCCCATGACCGT
CGTCGGAGCTATCGTGGGCCGTAGGACAACCTCCGACTTCCAGGCCCCCT
GCAGGACCACCCGCGTCCCCCGCCAGGTATGTCTGCCCCTTTACGGAGCC
CCCCGA
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