mRNA_L-elsbetiae_contig2047.6167.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig2047.6167.1 vs. uniprot
Match: D8LHA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA8_ECTSI) HSP 1 Score: 484 bits (1246), Expect = 9.740e-139 Identity = 521/1235 (42.19%), Postives = 577/1235 (46.72%), Query Frame = 1
Query: 1528 EGDSLEDIRSRLQQVDAISAKIDTAMMAAEDRLPAVGGTAVRRDVG--RRRVPTARLQQHLTDVQRHSRAPSRARGARKSDPRSPEDQPAAAXXXXXXXXXXXXXXXXXXXXXXXXXVAARGXXXXXXXXXXXXXXXXXXXXXNRKRKLPETGT-GTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLRPPITASGSGGATAQTGAGAMDAKAADSRKWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVADWSETHMVNVRLVVDVLVALGLVKSDYNTAEHAGGWPMDVHPPSERHGGAPAPCFCSAVMRRAMARHTKMAAPSAPAALPSLPTSFPMDPFQLGIPWNPGSAGGGDGGELSAVAAGRAAAGN------------AAIYGVPGQVAAP---LARA--------------MSPKSEAEAGEDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGPSXXXXXXXXXXXXXXXAPGKSXXXXXXXXXXXTLMTPPRIANTTAASAVPRAEXXXXXXXXXXXXXXXXXXXXXXXXASSLGPPAEDGGGAGGEVPEGLPDSLPLTGLTFEG-----QERQKLAPLYNMSGIGGGGHSGQALSSPSTSTFASLGGLPSPTPP----TLSILAGSSD---------GAAMELDVLDTGGSSSLSPAAVAAGASSFADAAAGRGWASGVSDDSIGAVTAAYLD---------------------------------NSGVGAAXXXXXXXXXXXXXXXXXXXXXXXXXXGGAVPPSPRAALDVVALGDDLSDEAKVLAEEGLLDLVGDAWGADTLGRAQEHLEEEALPYLPIDTRAFALAVEGRLEPGGEVEANYGRAAVEMLHLWLHLKSDNWARWREVQDQRGVGDTAAXXXXXXXXXXXXXXATRNAP---------------------DLASTSRLGAGVRTNASGAN---RKTGGGSRLSARKNSSHGGPGTRTATRSQHEGPAVVAAAALTRGNNGGLLKAARPGGSSAGTGXXSGXXXSAGSRSRXXXXXXXGKPKRVRYRLDGGHDRVLADWEGPARQALQVRYE 4911
+G+SL DI+SRLQQVD +SAKIDTAMMAAEDRLPAVGG A+ RDV RRRVPTARLQQHLTDVQRHSR RG RKSD R PE XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX RK+PE GT G AAA Q++ + G+ A A AGA+ AKA +R WEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVA+WSE+HMVNVRLVVDVL+ALGLVKSDYNT E + GWPMDVHPPSE HGGAPAPCFCS+VMRRAMARHTKMA P+ PAALPSL SFP+DPFQLGIPWNPGS AA+YGVPGQV AP +ARA +SPK E EAG G XXXXXX G XXXXXXXXX AP + + TPPR NT + A S G A EGLPD L LTGLTFEG QERQKLAPL NMSG G LS +AGS+D AMEL V+D G +G ++FA + SG+G A XXX G SP LDVVALG+ LSDEAK LAEEGL DLV DAWG++ RA ++EEEA+P LP+D RAFALAVEGRLEPGGEVE YG+AAVEMLHLWLHLKSDNW RWRE QD+RG D + XXXXXXXXXXX D S + + G+ NASGA R GGG+R R+ SS TR + AA G NGG+ + XX XXX XX + KRVRYRLDG HDRVLA+WE PAR+ALQ+ +
Sbjct: 75 QGESLRDIQSRLQQVDTLSAKIDTAMMAAEDRLPAVGGMALTRDVDCRRRRVPTARLQQHLTDVQRHSRQ----RGVRKSDSRPPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXRKVPENGTVGAAAAGASAGNARGVNPPSGSGSGSSIGTGIASIKSTAAAQAGARRINGTQHHQVKKREDSKGT--AMAGAAAGAVQAKAEVARTWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVANWSESHMVNVRLVVDVLIALGLVKSDYNTVEQSAGWPMDVHPPSESHGGAPAPCFCSSVMRRAMARHTKMATPAVPAALPSLTASFPIDPFQLGIPWNPGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVYGVPGQVGAPSTVVARAAAMQGGRLTGGGGALSPKREIEAG-GGAGLPGRLLVEPAAPVAAAAAAYSAAAWCGHGSTADRPGYSRRAGGLSGAVFGAGSSSAKEGPSVSWQQQQRTGRGETVAAVXXXXXXEALPSMLSPASSSLAIEGTIPGNHGSTTGGTDSSGGDGPRQAVLSGPSPATTSVAWHPSAGVXXXXXXXXXXXHGTIPRAPPPTPLL--------STTTPPRTTNTAVSVG------------------GVGVGSGPATVAVSAGWEARS------RAVEGLPDPLSLTGLTFEGVFSPSQERQKLAPLLNMSGGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLSAIAGSNDTTAAAAAGNSTAMELGVVDAG-----------SGVNAFARSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGLGVAASXXXNAAMVVAAR------------GTGASVSPGVPLDVVALGEHLSDEAKALAEEGLFDLVRDAWGSEASERAHCYVEEEAVPSLPVDGRAFALAVEGRLEPGGEVETTYGKAAVEMLHLWLHLKSDNWVRWRETQDRRGAVDPSTAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDNRDGYSAAAITRGIGNNASGAQPLRRAGGGGARTPVRRTSS--------VTRGGNRSRGSAGAAGSKSGKNGGVSSKQKXXXXXXXXXXXXXXXXXXXXXXXXXASVVATRIKRVRYRLDGEHDRVLANWEEPARKALQLELD 1236
BLAST of mRNA_L-elsbetiae_contig2047.6167.1 vs. uniprot
Match: A0A6H5KYA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA3_9PHAE) HSP 1 Score: 306 bits (785), Expect = 7.250e-82 Identity = 270/552 (48.91%), Postives = 293/552 (53.08%), Query Frame = 1
Query: 1510 GDEKKGEGDSLEDIRSRLQQVDAISAKIDTAMMAAEDRLPAVGGTAVRRDVG--RRRVPTARLQQHLTDVQRHSRAPSRARGARKSDPRSPED---------------------------------------------------------------------------------------------------------------------QPAAAXXXXXXXXXXXXXXXXXXXXXXXXXVAARGXXXXXXXXXXXXXXXXXXXXXNRKRKLPETGTGTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQLRPPITASGS-------------GGATAQTGAGAMD-----------------------AKAADSRKWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVADWSETHMVNVRLVVDVLVALGLVKSDYNTAEHAGGWPMDVHPPSERHGGAPAPCFCSAVMRRAMARHTKMAAPSAPAALPSLPTSFPMDPFQLGIPWNPGS 2700
G +G+G+SL DI+SRLQQVD +SAKIDTAMMAAEDRLPAVGG A+ RDV RRRVPTARLQQHLTDVQRHSR RG +KSDPR PED Q XXXXXXXXXXX VA ++ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LR + GG ++ GA A++ AK A +R WEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVA+WSE+HMVNVRLVVDVL+ALGLVKSDYNT E + GWPMDVHPPSE HGGAPAPCFCS+VMRRAMARHTKMA P+ PA LPSL SFP+DPFQLGIPWNPG+
Sbjct: 68 GSGAEGQGESLRDIQSRLQQVDTLSAKIDTAMMAAEDRLPAVGGMALTRDVDCRRRRVPTARLQQHLTDVQRHSRQ----RGVKKSDPRPPEDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINGTQHFQXXXXXXXXXXXXVLGGVPAAAPAAGAVAVTAVAVPSSVGAANAVAPLNASARHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCSKRDTPESLRAAAATAAETATAAMIHERVRVGGGDSREGAAAVEGXXXXXXXXXXXXXXXXXXXXVQAKTAVARTWEECVDEGEAFVTAMLASVVRSLAEGPKTETELDQSVRSDMDAGRAAAGLPVANWSESHMVNVRLVVDVLIALGLVKSDYNTVEQSAGWPMDVHPPSESHGGAPAPCFCSSVMRRAMARHTKMATPAVPAVLPSLTASFPIDPFQLGIPWNPGA 615
BLAST of mRNA_L-elsbetiae_contig2047.6167.1 vs. uniprot
Match: A0A6H5LFU5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LFU5_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.030e-44 Identity = 144/289 (49.83%), Postives = 160/289 (55.36%), Query Frame = 1
Query: 4090 SPRAALDVVALGDDLSDEAKVLAEEGLLDLVGDAWGADTLGRAQEHLEEEALPYLPIDTRAFALAVEGRLEPGGEVEANYGRAAVEMLHLWLHLKSDNWARWREVQDQRGVGDTAAXXXXXXXXXXXXXXATRNAPDLASTSRLGAGVRTNASGANRKTGGGS------------------RLSARKNSSHGGPGTRTATRSQHEGPAVVAAAALTRGNNGGLLKAARPGGSSAGTGXXSGXXXSAGSRSRXXXXXXXGKPKRVRYRLDGGHDRVLADWEGPARQALQV 4902
SP A LDVVALG+ LSDEAK LAEEGL DLV DAWG + RA ++EEE P LP+D RAFALAVEGRLEPGGEVE YG+AAVEMLHLWLHLKSDNW RWRE+QD+RG DT+ XXXXXXXXXXXXX R ARK SS TR + A AA G NGG+ + G S G X XXX + + KRVRYRLDG HDRVLA+WE PAR+ALQV
Sbjct: 971 SPGAPLDVVALGEHLSDEAKALAEEGLFDLVRDAWGGEASARAHSYVEEEVAPSLPVDGRAFALAVEGRLEPGGEVETTYGKAAVEMLHLWLHLKSDNWVRWREMQDRRGAVDTSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTPARKTSS--------VTRGGNRSRASAGAAGSKSGKNGGVSSKQKAGFYSGEKGAXXXXXXXXXXXAAGGAIVVATRIKRVRYRLDGEHDRVLANWEEPARKALQV 1251 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig2047.6167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig2047.6167.1 >prot_L-elsbetiae_contig2047.6167.1 ID=prot_L-elsbetiae_contig2047.6167.1|Name=mRNA_L-elsbetiae_contig2047.6167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1567bp MTRHNAMGESTASPGAPPVAGAGGGGPDTNGGSRGPGGVCVVGKAQQQQQback to top mRNA from alignment at L-elsbetiae_contig2047:3287..20558+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig2047.6167.1 ID=mRNA_L-elsbetiae_contig2047.6167.1|Name=mRNA_L-elsbetiae_contig2047.6167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=17272bp|location=Sequence derived from alignment at L-elsbetiae_contig2047:3287..20558+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig2047:3287..20558+ >mRNA_L-elsbetiae_contig2047.6167.1 ID=mRNA_L-elsbetiae_contig2047.6167.1|Name=mRNA_L-elsbetiae_contig2047.6167.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=9402bp|location=Sequence derived from alignment at L-elsbetiae_contig2047:3287..20558+ (Laminarionema elsbetiae ELsaHSoW15)back to top |